QBiC has two clusters available to run and analyze data directly. For both systems, an appropriate configuration profile is existing, enabling a direct usability of the pipeline on the respective cluster environment.
You may use the pipeline with the -profile binac switch when starting the pipeline. A typical call could work like this for example
nextflow run -profile binac SciLifeLab/NGI-RNAseq --reads '*_R{1,2}.fastq.gz' --genome GRCh37 -profile docker
You may use the pipeline with the -profile cfc switch when starting the pipeline. A typical call could work like this for example
nextflow run -profile cfc SciLifeLab/NGI-RNAseq --reads '*_R{1,2}.fastq.gz' --genome GRCh37 -profile docker
