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Calculate the fraction of reads that mapped during closed-reference clustering #12

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kelly-sovacool opened this issue Sep 11, 2020 · 0 comments

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kelly-sovacool commented Sep 11, 2020

Input: count or accnos file (from sample fit to a clustered reference); list file (OptiFit result)
Output: fraction of reads in the count/accnos file that mapped to OTUs in the list file

Already implemented in Python for the OptiFit benchmarking project. Want to re-write in R and write tests.

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