diff --git a/wsinfer/cli/infer.py b/wsinfer/cli/infer.py index 705ce0c..9b937cd 100644 --- a/wsinfer/cli/infer.py +++ b/wsinfer/cli/infer.py @@ -447,9 +447,12 @@ def run( with open(run_metadata_outpath, "w") as f: json.dump(run_metadata, f, indent=2) - click.secho("Finished.", fg="green") - + click.echo("Writing inference results to GeoJSON files") csvs = list((results_dir / "model-outputs-csv").glob("*.csv")) write_geojsons(csvs, results_dir, num_workers) + if qupath: + click.echo("Creating QuPath project with results") make_qupath_project(wsi_dir, results_dir) + + click.secho("Finished.", fg="green")