From 29c333ec179378625e104ef816180ba2e0061707 Mon Sep 17 00:00:00 2001 From: MacBook M1 Pro 16 Date: Wed, 20 Nov 2024 17:05:12 +0000 Subject: [PATCH 1/5] MS-PINPOINT project added --- _projects/MS_PINPOINT/Data/CARE_SITE.csv | 101 ++++++ .../MS_PINPOINT/Data/CONDITION_OCCURRENCE.csv | 101 ++++++ _projects/MS_PINPOINT/Data/DRUG_EXPOSURE.csv | 301 ++++++++++++++++++ .../MS_PINPOINT/Data/Data_Description.csv | 211 ++++++++++++ .../Data/DistributionOfValues copy.csv | 49 +++ .../MS_PINPOINT/Data/FACT_RELATIONSHIP.csv | 101 ++++++ _projects/MS_PINPOINT/Data/MEASUREMENT.csv | 101 ++++++ _projects/MS_PINPOINT/Data/OBSERVATION.csv | 101 ++++++ .../MS_PINPOINT/Data/OBSERVATION_PERIOD.csv | 101 ++++++ _projects/MS_PINPOINT/Data/PERSON.csv | 101 ++++++ .../MS_PINPOINT/Data/PROCEDURE_OCCURRENCE.csv | 101 ++++++ _projects/MS_PINPOINT/Data/SPECIMEN.csv | 101 ++++++ .../MS_PINPOINT/Data/VISIT_OCCURRENCE.csv | 101 ++++++ _projects/MS_PINPOINT/data.html | 19 ++ _projects/MS_PINPOINT/data.md | 4 + _projects/MS_PINPOINT/index.md | 20 ++ _projects/MS_PINPOINT/info.md | 14 + _projects/index.md | 0 18 files changed, 1628 insertions(+) create mode 100644 _projects/MS_PINPOINT/Data/CARE_SITE.csv create mode 100644 _projects/MS_PINPOINT/Data/CONDITION_OCCURRENCE.csv create mode 100644 _projects/MS_PINPOINT/Data/DRUG_EXPOSURE.csv create mode 100644 _projects/MS_PINPOINT/Data/Data_Description.csv create mode 100644 _projects/MS_PINPOINT/Data/DistributionOfValues copy.csv create mode 100644 _projects/MS_PINPOINT/Data/FACT_RELATIONSHIP.csv create mode 100644 _projects/MS_PINPOINT/Data/MEASUREMENT.csv create mode 100644 _projects/MS_PINPOINT/Data/OBSERVATION.csv create mode 100644 _projects/MS_PINPOINT/Data/OBSERVATION_PERIOD.csv create mode 100644 _projects/MS_PINPOINT/Data/PERSON.csv create mode 100644 _projects/MS_PINPOINT/Data/PROCEDURE_OCCURRENCE.csv create mode 100644 _projects/MS_PINPOINT/Data/SPECIMEN.csv create mode 100644 _projects/MS_PINPOINT/Data/VISIT_OCCURRENCE.csv create mode 100644 _projects/MS_PINPOINT/data.html create mode 100644 _projects/MS_PINPOINT/data.md create mode 100644 _projects/MS_PINPOINT/index.md create mode 100644 _projects/MS_PINPOINT/info.md create mode 100644 _projects/index.md diff --git a/_projects/MS_PINPOINT/Data/CARE_SITE.csv b/_projects/MS_PINPOINT/Data/CARE_SITE.csv new file mode 100644 index 0000000..e908c4b --- /dev/null +++ b/_projects/MS_PINPOINT/Data/CARE_SITE.csv @@ -0,0 +1,101 @@ +pinpoint_person_id,care_site_id,place_of_service_concept_id +32,0, +99,1, +84,2, +16,3, +90,4, +53,5, +62,6, +5,7, +2,8, +63,9, +33,10, +82,11, +9,12, +4,13, +37,14, +61,15, +84,16, +95,17, +13,18, +98,19, +7,20, +30,21, +18,22, +36,23, +46,24, +8,25, +26,26, +35,27, +61,28, +46,29, +82,30, +21,31, +72,32, +16,33, +73,34, +0,35, +9,36, +84,37, +45,38, +61,39, +17,40, +76,41, +12,42, +65,43, +20,44, +55,45, +13,46, +42,47, +98,48, +49,49, +93,50, +66,51, +44,52, +29,53, +40,54, +32,55, +99,56, +48,57, +37,58, +66,59, +4,60, +33,61, +34,62, +37,63, +22,64, +18,65, +98,66, +71,67, +4,68, +33,69, +89,70, +94,71, +25,72, +83,73, +41,74, +84,75, +71,76, +23,77, +0,78, +42,79, +14,80, +23,81, +2,82, +73,83, +71,84, +40,85, +73,86, +44,87, +43,88, +70,89, +88,90, +28,91, +23,92, +35,93, +20,94, +4,95, +17,96, +35,97, +55,98, +56,99, diff --git a/_projects/MS_PINPOINT/Data/CONDITION_OCCURRENCE.csv b/_projects/MS_PINPOINT/Data/CONDITION_OCCURRENCE.csv new file mode 100644 index 0000000..ec7b632 --- /dev/null +++ b/_projects/MS_PINPOINT/Data/CONDITION_OCCURRENCE.csv @@ -0,0 +1,101 @@ +pinpoint_person_id,condition_occurrence_id,visit_occurrence_id,condition_type_concept_id,condition_concept_id,condition_source_concept_id,condition_source_value,condition_status_concept_id +37,0,18,32821,45571794,0,"Obesity, unspecified",32909 +92,1,33,32821,45571794,0,Faecal incontinence,32909 +0,2,43,32821,40443308,0,"COVID-19, virus identified",32909 +29,3,54,32821,45537929,0,"Cataract, unspecified",32909 +96,4,44,32840,45553207,0,Mental and behavioural disorders due to use of ...,32903 +44,5,55,32821,440383,0,"Obesity, unspecified",0 +92,6,4,32821,45548818,0,Old myocardial infarction,32909 +48,7,50,32821,31317,0,"Emphysema, unspecified",32909 +99,8,49,32821,315564,0,"Lymphoedema, not elsewhere classified",32909 +26,9,34,32821,45600651,0,Other specified urinary incontinence,32903 +32,10,29,32821,45571538,0,Headache,32909 +26,11,48,32821,45562106,0,"Hypothyroidism, unspecified",32909 +70,12,73,32821,45591963,0,Residual haemorrhoidal skin tags,32903 +48,13,69,32840,45605871,0,Relapsing remitting multiple sclerosis,32909 +65,14,57,32821,45575581,0,"Urinary tract infection, site not specified",32909 +62,15,11,32821,45595688,0,Sleep apnoea,32909 +39,16,39,32840,45552757,0,Multiple sclerosis,32909 +82,17,5,32821,45756119,0,"Migraine, unspecified",32903 +80,18,97,32821,45533641,0,Other and unspecified symptoms and signs involv...,32909 +17,19,62,32821,132797,0,"Anxiety disorder, unspecified",32903 +30,20,31,32840,4114161,0,Multiple sclerosis,0 +79,21,9,32821,45543454,0,Multiple sclerosis,0 +35,22,28,32821,45571794,0,"Obesity, unspecified",0 +78,23,26,32821,45562083,0,Headache,32909 +32,24,62,32821,45605715,0,Multiple sclerosis,32909 +16,25,19,32821,45552784,0,Other specified degenerative disorders of nervo...,32909 +40,26,20,32840,374919,0,Nonfamilial hypogammaglobulinaemia,32903 +13,27,3,32840,45605450,0,Multiple sclerosis,32909 +43,28,17,32821,4329728,0,Fibromyalgia,32909 +6,29,65,32840,45596308,0,"Chronic ischaemic heart disease, unspecified",0 +67,30,79,32821,45596281,0,Relapsing remitting multiple sclerosis,32909 +97,31,55,32817,45571794,0,Other specified intervertebral disc degeneration,32909 +9,32,36,32821,45571794,0,Multiple sclerosis,32909 +66,33,36,32821,45562449,0,"Anxiety disorder, unspecified",32903 +36,34,53,32817,45592414,0,Nystagmus and other irregular eye movements,32909 +58,35,98,32821,45533824,0,Delusional disorder,32909 +20,36,23,32821,45571794,0,"Asthma, unspecified",32909 +80,37,7,32821,45552429,0,Mild cognitive disorder,32892 +82,38,10,32821,45596337,0,Other chronic osteomyelitis: lower leg,32909 +52,39,94,32840,45543287,0,Optic neuritis,32909 +52,40,78,32840,45566889,0,Diplopia,0 +96,41,62,32821,45571794,0,Ménière disease,32909 +18,42,78,32821,45600610,0,Relapsing remitting multiple sclerosis,32892 +18,43,2,32821,45587258,0,Hiatal hernia,32909 +53,44,70,32821,45561952,0,Other specified urinary incontinence,32903 +67,45,37,32821,45601025,0,Multiple sclerosis,32909 +26,46,24,32840,4145049,0,Multiple sclerosis,32909 +11,47,87,32821,45591584,0,Deviated nasal septum,32909 +1,48,14,32821,45543325,0,Multiple sclerosis,32909 +99,49,64,32821,45606128,0,Unspecified haematuria,32903 +75,50,8,32821,45537945,0,Pain in limb: multiple sites,32909 +80,51,26,32821,45586161,0,Multiple sclerosis,0 +43,52,39,32821,45542849,0,"Bipolar affective disorder, unspecified",0 +8,53,71,32817,45576460,0,Faecal incontinence,0 +26,54,43,32821,45571794,0,Relapsing remitting multiple sclerosis,32909 +26,55,21,32821,45542900,0,"Osteoporosis, unspecified",32903 +44,56,13,32821,45562456,0,Multiple sclerosis,32909 +25,57,24,32821,45577525,0,Cramp and spasm,32909 +97,58,23,32821,442588,0,FINDINGS - TESTS - CARDIOLOGY TESTS - ECHOCARDI...,0 +39,59,99,32821,45571794,0,Secondary malignant neoplasm of bone and bone m...,32909 +21,60,18,32821,45571697,0,Glaucoma,32903 +3,61,76,32821,45605941,0,Dysarthria and anarthria,32903 +84,62,53,32821,4114161,0,Acute transverse myelitis in demyelinating dise...,32903 +41,63,50,32821,45592421,0,"Chronic kidney disease, unspecified",32909 +38,64,81,32821,45571739,0,Other chronic pain,32909 +14,65,59,32821,45571794,0,Multiple sclerosis,32903 +73,66,55,32821,45571758,0,Multiple sclerosis,32909 +55,67,5,32821,45568120,0,Multiple sclerosis,0 +87,68,87,32821,374919,0,Relapsing remitting multiple sclerosis,32909 +69,69,95,32821,4006971,0,Multiple sclerosis,32909 +93,70,73,32821,45533130,0,"Disease of intestine, unspecified",32909 +22,71,17,32821,45571794,0,"Developmental disorder of scholastic skills, un...",32909 +93,72,18,32821,45571794,0,"Migraine, unspecified",32909 +50,73,99,32821,45595961,0,Nontoxic single thyroid nodule,32909 +33,74,2,32821,45548502,0,Multiple sclerosis,0 +42,75,27,32840,318800,0,Myasthenia gravis,32903 +40,76,4,32821,45571794,0,"Urinary tract infection, site not specified",32909 +30,77,91,32840,45586941,0,Multiple sclerosis,32903 +69,78,22,32821,45571794,0,"Aortic aneurysm of unspecified site, without me...",32903 +29,79,43,32821,4145049,0,"Epilepsy, unspecified",0 +44,80,39,32821,45571994,0,Hypothyroidism,0 +40,81,19,32840,45587505,0,Relapsing remitting multiple sclerosis,32892 +44,82,5,32840,45587507,0,Multiple sclerosis,32909 +6,83,63,32821,45553726,0,Anxiety disorder,32909 +67,84,36,32821,45571794,0,Allergic rhinitis due to pollen,32909 +94,85,71,32840,45571794,0,Disorders of phosphorus metabolism and phosphat...,32909 +62,86,19,32817,45576211,0,Chronic obstructive pulmonary disease with acut...,0 +20,87,8,32821,45571794,0,Essential (primary) hypertension,0 +15,88,27,32840,45533641,0,FINDINGS - TESTS - CARDIOLOGY TESTS - ECHOCARDI...,32903 +71,89,50,32821,45571794,0,"Migraine, unspecified",32909 +44,90,61,32821,45542779,0,Essential (primary) hypertension,32909 +14,91,12,32821,45591553,0,Acquired absence of genital organ(s),32909 +9,92,51,32821,45557663,0,Multiple sclerosis,32903 +31,93,63,32821,45581386,0,Reflex incontinence of urine,32909 +69,94,76,32821,45548115,0,"Urinary tract infection, site not specified",0 +5,95,28,32821,45562456,0,Secondary malignant neoplasm of other specified...,32909 +54,96,62,32821,374919,0,Faecal incontinence,32909 +9,97,43,32821,45562456,0,Faecal incontinence,32909 +86,98,5,32821,45548665,0,"Endometriosis, unspecified",32909 +22,99,34,32821,374919,0,Other and unspecified atrioventricular block,32909 diff --git a/_projects/MS_PINPOINT/Data/DRUG_EXPOSURE.csv b/_projects/MS_PINPOINT/Data/DRUG_EXPOSURE.csv new file mode 100644 index 0000000..7aad284 --- /dev/null +++ b/_projects/MS_PINPOINT/Data/DRUG_EXPOSURE.csv @@ -0,0 +1,301 @@ +pinpoint_person_id,drug_exposure_id,visit_occurrence_id,drug_concept_id,drug_type_concept_id,route_concept_id,dose_unit_source_value,route_source_value,drug_source_concept_id +6,0,3,40707795,32818,4132161,"dose: mg +rate: *Unspecified +amount: Syringe ",Oral,36816817 +33,1,64,43717778,32818,4171047,"dose: mg +rate: *Unspecified +amount: mg ",Oral,36816494 +55,2,51,987250,32818,4132161,"dose: mL +rate: *Unspecified +amount: mL ",Oral,21199846 +12,3,56,42479436,32818,4171047,"dose: mg +rate: *Unspecified +amount: mg ",Oral,35890248 +67,4,42,21139291,32818,4171047,"dose: Units +rate: *Unspecified +amount: capsule ",nebulisation,36122785 +38,5,77,40162672,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Oral,21236850 +76,6,66,42479436,32818,4132161,"dose: mg +rate: mL/hr +amount: mL ",Intravenous,21236850 +66,7,81,41374253,32818,4142048,"dose: mg +rate: *Unspecified +amount: mL ",PEG/RIG,21255277 +60,8,78,41371286,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Oral,36815880 +3,9,53,42708590,32818,4171047,"dose: mL +rate: mL/hr +amount: mL ",Intravenous,36121185 +70,10,27,41348915,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Oral,36120595 +9,11,22,21049614,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,36816961 +63,12,28,44071319,32818,4186839,"dose: micrograms/hr +rate: mL/hr +amount: ",Intravenous,21291496 +28,13,47,19014880,32818,4217202,"dose: tablet +rate: *Unspecified +amount: tablet ",Oral,21311711 +84,14,93,40244448,32818,4171047,"dose: mL +rate: *Unspecified +amount: ",Intravenous,36123313 +53,15,62,40751804,32818,4171047,"dose: micrograms/hr +rate: mL/hr +amount: mL ",Intravenous,36816442 +24,16,75,41374253,32818,4132161,"dose: mg +rate: *Unspecified +amount: tablet ",Oral,21235523 +15,17,10,40169893,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Oral,21273056 +57,18,96,929889,32818,4132161,"dose: mg +rate: *Unspecified +amount: mg ",Oral,36815547 +43,19,61,42479436,32818,4186838,"dose: mg +rate: *Unspecified +amount: tablet ",Oral,36072451 +53,20,20,19122148,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,21274381 +42,21,41,40715131,32818,4171047,"dose: mg +rate: *Unspecified +amount: mg ",Oral,35889132 +1,22,53,41371286,32818,4171047,"dose: mL +rate: *Unspecified +amount: mL ",Intravenous,36815880 +32,23,56,44109972,32818,4171047,"dose: pair +rate: mL/hr +amount: pair ",Intravenous,21272929 +18,24,9,35775967,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Oral,21199846 +11,25,75,36881159,32818,4303277,"dose: mg +rate: *Unspecified +amount: tablet ",Oral,21311171 +79,26,4,43012036,32818,4132161,"dose: mg +rate: *Unspecified +amount: mg ",Intravenous,21292916 +35,27,99,19019306,32818,4171047,"dose: mmol +rate: *Unspecified +amount: mL ",Intravenous,36816017 +65,28,53,36892820,32818,4171047,"dose: g +rate: mL/hr +amount: g ",Oral,36961161 +39,29,60,19098167,32818,4132161,"dose: mL +rate: mL/hr +amount: mL ",Oral,36072451 +96,30,25,40240688,32818,4132161,"dose: mg +rate: *Unspecified +amount: tablet ",Intra-arterial,36815547 +0,31,89,44109973,32818,4132161,"dose: mg +rate: *Unspecified +amount: mg ",Intravenous,36122388 +62,32,58,40167216,32818,4132161,"dose: mL +rate: *Unspecified +amount: mL ",Intravenous,21274381 +86,33,28,21159108,32818,4132161,"dose: mg +rate: *Unspecified +amount: mg ",Oral,36816132 +11,34,87,904457,32818,4132161,"dose: tablet +rate: *Unspecified +amount: tablet ",Intravenous,21255260 +71,35,7,21149133,32818,4262099,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,36817005 +7,36,97,43291933,32818,4171047,"dose: *Unspecified +rate: *Unspecified +amount...",Intravenous,21237166 +66,37,42,41336943,32818,4171047,"dose: drop +rate: *Unspecified +amount: mL ",Oral,21236976 +64,38,21,40707795,32818,4142048,"dose: Units +rate: *Unspecified +amount: Units ",Intravenous,36815880 +79,39,72,43173224,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Oral,36817005 +90,40,24,36892820,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,21292647 +16,41,98,42918207,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Oral,21291496 +85,42,31,36892820,32818,4132161,"dose: mg +rate: *Unspecified +amount: capsule ",Oral,21291496 +25,43,52,19014880,32818,4132161,"dose: mg +rate: mL/hr +amount: mL ",Intravenous,36815880 +61,44,78,42479436,32818,4171047,"dose: mg +rate: mL/hr +amount: mL ",Intravenous,21199983 +74,45,68,40240688,32818,4171047,"dose: g +rate: *Unspecified +amount: tablet ",Both Eyes,36919303 +63,46,10,929924,32818,4171047,"dose: mg/hr +rate: mL/hr +amount: ",Intravenous,40692547 +98,47,14,41415630,32818,4142048,"dose: mg +rate: mL/hr +amount: mL ",Oral,36816550 +32,48,10,41369692,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,21236850 +57,49,34,40224822,32818,4171047,"dose: mg +rate: mL/hr +amount: mL ",Oral,35890835 +48,50,61,40169944,32818,4171047,"dose: *Unspecified +rate: *Unspecified +amount...",Intravenous,21198605 +49,51,83,36054909,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Subcutaneous,21218082 +73,52,85,40722342,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Oral,40694154 +74,53,32,929889,32818,4171047,"dose: mg +rate: mL/hr +amount: mL ",Oral,21311711 +41,54,53,42479436,32818,4132161,"dose: g +rate: *Unspecified +amount: g ",Oral,21236850 +30,55,89,40240688,32818,4132161,"dose: mg +rate: *Unspecified +amount: tablet ",Oral,21274383 +55,56,19,19098167,32818,4132161,"dose: sachet(s) +rate: *Unspecified +amount: s...",Intravenous,21291496 +15,57,59,21125875,32818,4171047,"dose: *Unspecified +rate: mL/hr +amount: ",Intravenous,36816707 +37,58,96,36057429,32818,4132161,"dose: mg +rate: *Unspecified +amount: tablet ",Intravenous,36817005 +83,59,71,21049614,32818,4132161,"dose: mg +rate: *Unspecified +amount: tablet ",Oral,21291496 +64,60,91,1387453,32818,4132161,"dose: tablet +rate: *Unspecified +amount: tablet ",Subcutaneous,21180907 +71,61,25,42918207,32818,4132161,"dose: mg/hr +rate: mL/hr +amount: ",Oral,36122388 +22,62,89,36054909,32818,4171047,"dose: drop +rate: *Unspecified +amount: ",Intravenous,21311711 +51,63,65,19106652,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Oral,40696132 +0,64,34,42918207,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,36815035 +99,65,86,789581,32818,4142048,"dose: mL +rate: mL/hr +amount: mL ",Oral,21311696 +61,66,60,40240688,32818,4132161,"dose: mg +rate: *Unspecified +amount: tablet ",Intravenous,21311171 +40,67,50,35775967,32818,4171047,"dose: mg +rate: *Unspecified +amount: tablet ",Oral,35890870 +80,68,63,40707795,32818,4132161,"dose: Units +rate: *Unspecified +amount: capsule ",Oral,21274139 +51,69,78,36890770,32818,4132161,"dose: mg +rate: *Unspecified +amount: ",Intravenous,21236850 +84,70,14,40739137,32818,4132161,"dose: mg/hr +rate: mL/hr +amount: ",Intravenous,21199985 +41,71,83,19004043,32818,4132161,"dose: mL +rate: *Unspecified +amount: mL ",Oral,21236850 +69,72,14,19074721,32818,4171047,"dose: mg +rate: *Unspecified +amount: tablet ",Intravenous,36816902 +14,73,92,44097638,32818,4132161,"dose: micrograms +rate: *Unspecified +amount: ...",Intramuscular,36122736 +18,74,71,42479436,32818,4132161,"dose: mg +rate: mL/hr +amount: mL ",Subcutaneous,36816432 +79,75,54,40750949,32818,0,"dose: mg +rate: *Unspecified +amount: capsule ",Oral,36816494 +97,76,34,40224822,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,36817005 +31,77,75,44097638,32818,4142048,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,36123310 +19,78,74,40751804,32818,4171047,"dose: puff +rate: *Unspecified +amount: Act ",Oral,36817005 +69,79,39,42918207,32818,4171047,"dose: micrograms +rate: *Unspecified +amount: ...",Intravenous,21309984 +90,80,52,41374253,32818,4132161,"dose: mg +rate: *Unspecified +amount: capsule ",Intravenous,21237166 +68,81,34,35776479,32818,4132161,"dose: mg +rate: *Unspecified +amount: capsule ",Oromucosal,36817005 +0,82,80,40240688,32818,4303277,"dose: mg +rate: *Unspecified +amount: mL ",Nasogastric,21199985 +68,83,28,42479436,32818,4132161,"dose: mg +rate: *Unspecified +amount: tablet ",Intravenous,21235697 +47,84,52,739209,32818,40486069,"dose: mg +rate: *Unspecified +amount: capsule ",Oral,36123598 +10,85,46,43012036,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,21273542 +30,86,60,987250,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Oral,36079656 +54,87,51,43683853,32818,4171047,"dose: mL +rate: *Unspecified +amount: mL ",Subcutaneous,36123183 +19,88,5,789581,32818,4171047,"dose: Units +rate: *Unspecified +amount: tablet ",Oral,21311703 +42,89,94,41374253,32818,0,"dose: mg/hr +rate: mL/hr +amount: ",Oral,21273959 +13,90,99,40897123,32818,4171047,"dose: mg +rate: *Unspecified +amount: mL ",Oral,21199160 +88,91,19,40169766,32818,0,"dose: mg +rate: mL/hr +amount: mL ",Oral,40694154 +31,92,79,739207,32818,4171047,"dose: tablet +rate: *Unspecified +amount: tablet ",Oral,21311171 +59,93,79,44135078,32818,4171047,"dose: mg +rate: *Unspecified +amount: mg ",Oral,21236850 +70,94,5,40244448,32818,4171047,"dose: mL/hr +rate: mL/hr +amount: ",Subcutaneous,21237139 +35,95,97,40715131,32818,4171047,"dose: mg +rate: *Unspecified +amount: tablet ",Intravenous,21198334 +82,96,31,42479436,32818,4186839,"dose: mg +rate: *Unspecified +amount: tablet ",Intravenous,21218082 +81,97,59,43683853,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Urethral,21292647 +64,98,24,42479436,32818,4132161,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,21236850 +67,99,84,43684053,32818,0,"dose: mg +rate: *Unspecified +amount: mL ",Intravenous,36073280 diff --git a/_projects/MS_PINPOINT/Data/Data_Description.csv b/_projects/MS_PINPOINT/Data/Data_Description.csv new file mode 100644 index 0000000..a1a42d3 --- /dev/null +++ b/_projects/MS_PINPOINT/Data/Data_Description.csv @@ -0,0 +1,211 @@ +Variable Name,File,Type,Mean (if applicable),Standard dev. (If applicable),Range (if applicable) +visit_detail_id,NOTE.parquet,ID,,,"(nan, nan)" +person_id,SPECIMEN.parquet,ID,,,"(nan, nan)" +visit_detail_concept_id,VISIT_DETAIL.parquet,ID,,,"(nan, nan)" +visit_detail_start_date,VISIT_DETAIL.parquet,Empty,,,"(nan, nan)" +visit_detail_start_datetime,VISIT_DETAIL.parquet,Empty,,,"(nan, nan)" +visit_detail_end_date,VISIT_DETAIL.parquet,Empty,,,"(nan, nan)" +visit_detail_end_datetime,VISIT_DETAIL.parquet,Empty,,,"(nan, nan)" +visit_detail_type_concept_id,VISIT_DETAIL.parquet,ID,,,"(nan, nan)" +provider_id,NOTE.parquet,ID,,,"(nan, nan)" +care_site_id,VISIT_OCCURRENCE.parquet,ID,,,"(nan, nan)" +visit_detail_source_value,VISIT_DETAIL.parquet,Empty,,,"(nan, nan)" +visit_detail_source_concept_id,VISIT_DETAIL.parquet,ID,,,"(nan, nan)" +admitted_from_concept_id,VISIT_DETAIL.parquet,ID,,,"(nan, nan)" +admitted_from_source_value,VISIT_DETAIL.parquet,Empty,,,"(nan, nan)" +discharged_to_source_value,VISIT_DETAIL.parquet,Empty,,,"(nan, nan)" +discharged_to_concept_id,VISIT_DETAIL.parquet,ID,,,"(nan, nan)" +preceding_visit_detail_id,VISIT_DETAIL.parquet,ID,,,"(nan, nan)" +parent_visit_detail_id,VISIT_DETAIL.parquet,ID,,,"(nan, nan)" +visit_occurrence_id,VISIT_OCCURRENCE.parquet,ID,,,"(nan, nan)" +plugin_provenance,NOTE.parquet,Empty,,,"(nan, nan)" +data_source,NOTE.parquet,Empty,,,"(nan, nan)" +gender_concept_id,PERSON.parquet,ID,,,"(nan, nan)" +year_of_birth,PERSON.parquet,Numeric,1969.5848218504868,15.219905000091574,"(np.float64(1914.0), np.float64(2010.0))" +month_of_birth,PERSON.parquet,Numeric,6.473679236367073,3.3927590087228467,"(np.float64(1.0), np.float64(12.0))" +day_of_birth,PERSON.parquet,Empty,,,"(nan, nan)" +birth_datetime,PERSON.parquet,Datetime,,,"(Timestamp('1914-03-01 00:00:00+0000', tz='UTC'), Timestamp('2010-07-01 00:00:00+0000', tz='UTC'))" +race_concept_id,PERSON.parquet,ID,,,"(nan, nan)" +ethnicity_concept_id,PERSON.parquet,ID,,,"(nan, nan)" +location_id,CARE_SITE.parquet,ID,,,"(nan, nan)" +person_source_value,PERSON.parquet,String,,,"(nan, nan)" +gender_source_value,PERSON.parquet,String,,,"(nan, nan)" +gender_source_concept_id,PERSON.parquet,ID,,,"(nan, nan)" +race_source_value,PERSON.parquet,String,,,"(nan, nan)" +race_source_concept_id,PERSON.parquet,ID,,,"(nan, nan)" +ethnicity_source_value,PERSON.parquet,Empty,,,"(nan, nan)" +ethnicity_source_concept_id,PERSON.parquet,ID,,,"(nan, nan)" +address_1,LOCATION.parquet,Empty,,,"(nan, nan)" +address_2,LOCATION.parquet,Empty,,,"(nan, nan)" +city,LOCATION.parquet,Empty,,,"(nan, nan)" +state,LOCATION.parquet,Empty,,,"(nan, nan)" +zip,LOCATION.parquet,String,,,"(nan, nan)" +county,LOCATION.parquet,Empty,,,"(nan, nan)" +location_source_value,LOCATION.parquet,Empty,,,"(nan, nan)" +death_datetime,DEATH.parquet,Datetime,,,"(Timestamp('2012-06-07 23:00:00+0000', tz='UTC'), Timestamp('2024-05-22 23:00:00+0000', tz='UTC'))" +death_date,DEATH.parquet,String,,,"(nan, nan)" +death_type_concept_id,DEATH.parquet,ID,,,"(nan, nan)" +cause_concept_id,DEATH.parquet,ID,,,"(nan, nan)" +cause_source_value,DEATH.parquet,Empty,,,"(nan, nan)" +cause_source_concept_id,DEATH.parquet,ID,,,"(nan, nan)" +condition_occurrence_id,CONDITION_OCCURRENCE.parquet,ID,,,"(nan, nan)" +condition_concept_id,CONDITION_OCCURRENCE.parquet,ID,,,"(nan, nan)" +condition_start_date,CONDITION_OCCURRENCE.parquet,String,,,"(nan, nan)" +condition_type_concept_id,CONDITION_OCCURRENCE.parquet,ID,,,"(nan, nan)" +condition_status_concept_id,CONDITION_OCCURRENCE.parquet,ID,,,"(nan, nan)" +condition_start_datetime,CONDITION_OCCURRENCE.parquet,Datetime,,,"(Timestamp('1955-01-01 00:00:00+0000', tz='GMT'), Timestamp('2024-06-12 11:42:11+0000', tz='GMT'))" +condition_end_date,CONDITION_OCCURRENCE.parquet,String,,,"(nan, nan)" +condition_end_datetime,CONDITION_OCCURRENCE.parquet,Datetime,,,"(Timestamp('2008-04-17 00:00:00+0000', tz='GMT'), Timestamp('2024-12-19 00:00:00+0000', tz='GMT'))" +stop_reason,DRUG_EXPOSURE.parquet,Empty,,,"(nan, nan)" +condition_source_value,CONDITION_OCCURRENCE.parquet,String,,,"(nan, nan)" +condition_source_concept_id,CONDITION_OCCURRENCE.parquet,ID,,,"(nan, nan)" +condition_status_source_value,CONDITION_OCCURRENCE.parquet,Empty,,,"(nan, nan)" +note_nlp_id,NOTE_NLP.parquet,ID,,,"(nan, nan)" +note_id,NOTE.parquet,ID,,,"(nan, nan)" +section_concept_id,NOTE_NLP.parquet,ID,,,"(nan, nan)" +snippet,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +offset,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +lexical_variant,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +note_nlp_concept_id,NOTE_NLP.parquet,ID,,,"(nan, nan)" +note_nlp_source_concept_id,NOTE_NLP.parquet,ID,,,"(nan, nan)" +nlp_system,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +nlp_date,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +nlp_datetime,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +term_exists,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +term_temporal,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +term_modifiers,NOTE_NLP.parquet,Empty,,,"(nan, nan)" +drug_exposure_id,DRUG_EXPOSURE.parquet,ID,,,"(nan, nan)" +drug_concept_id,DRUG_EXPOSURE.parquet,ID,,,"(nan, nan)" +drug_exposure_start_date,DRUG_EXPOSURE.parquet,String,,,"(nan, nan)" +drug_exposure_start_datetime,DRUG_EXPOSURE.parquet,Datetime,,,"(Timestamp('2019-03-31 03:00:00+0000', tz='GMT'), Timestamp('2024-06-12 23:15:00+0000', tz='GMT'))" +drug_exposure_end_date,DRUG_EXPOSURE.parquet,String,,,"(nan, nan)" +drug_exposure_end_datetime,DRUG_EXPOSURE.parquet,Datetime,,,"(Timestamp('2019-03-31 03:10:00+0000', tz='GMT'), Timestamp('2024-06-15 18:31:00+0000', tz='GMT'))" +verbatim_end_date,DRUG_EXPOSURE.parquet,Empty,,,"(nan, nan)" +drug_type_concept_id,DRUG_EXPOSURE.parquet,ID,,,"(nan, nan)" +refills,DRUG_EXPOSURE.parquet,Empty,,,"(nan, nan)" +quantity,SPECIMEN.parquet,Empty,,,"(nan, nan)" +days_supply,DRUG_EXPOSURE.parquet,Empty,,,"(nan, nan)" +sig,DRUG_EXPOSURE.parquet,Empty,,,"(nan, nan)" +route_concept_id,DRUG_EXPOSURE.parquet,ID,,,"(nan, nan)" +lot_number,DRUG_EXPOSURE.parquet,Empty,,,"(nan, nan)" +drug_source_value,DRUG_EXPOSURE.parquet,Empty,,,"(nan, nan)" +drug_source_concept_id,DRUG_EXPOSURE.parquet,ID,,,"(nan, nan)" +route_source_value,DRUG_EXPOSURE.parquet,String,,,"(nan, nan)" +dose_unit_source_value,DRUG_EXPOSURE.parquet,String,,,"(nan, nan)" +procedure_occurrence_id,PROCEDURE_OCCURRENCE.parquet,ID,,,"(nan, nan)" +procedure_concept_id,PROCEDURE_OCCURRENCE.parquet,ID,,,"(nan, nan)" +procedure_date,PROCEDURE_OCCURRENCE.parquet,String,,,"(nan, nan)" +procedure_type_concept_id,PROCEDURE_OCCURRENCE.parquet,ID,,,"(nan, nan)" +procedure_datetime,PROCEDURE_OCCURRENCE.parquet,Datetime,,,"(Timestamp('2010-01-04 00:00:00+0000', tz='GMT'), Timestamp('2024-06-12 17:58:28+0000', tz='GMT'))" +modifier_concept_id,PROCEDURE_OCCURRENCE.parquet,ID,,,"(nan, nan)" +procedure_source_value,PROCEDURE_OCCURRENCE.parquet,Empty,,,"(nan, nan)" +procedure_source_concept_id,PROCEDURE_OCCURRENCE.parquet,ID,,,"(nan, nan)" +modifier_source_value,PROCEDURE_OCCURRENCE.parquet,Empty,,,"(nan, nan)" +observation_id,OBSERVATION.parquet,ID,,,"(nan, nan)" +observation_concept_id,OBSERVATION.parquet,ID,,,"(nan, nan)" +observation_date,OBSERVATION.parquet,String,,,"(nan, nan)" +observation_type_concept_id,OBSERVATION.parquet,ID,,,"(nan, nan)" +observation_datetime,OBSERVATION.parquet,Datetime,,,"(Timestamp('2019-02-09 00:00:00+0000', tz='GMT'), Timestamp('2024-06-13 13:48:50.981892+0000', tz='GMT'))" +value_as_number,MEASUREMENT.parquet,Numeric,31.036676383642636,342.2649990346469,"(np.float64(0.0), np.float64(10000.0))" +value_as_string,OBSERVATION.parquet,Empty,,,"(nan, nan)" +value_as_concept_id,MEASUREMENT.parquet,ID,,,"(nan, nan)" +qualifier_concept_id,OBSERVATION.parquet,ID,,,"(nan, nan)" +unit_concept_id,SPECIMEN.parquet,ID,,,"(nan, nan)" +observation_source_value,OBSERVATION.parquet,Empty,,,"(nan, nan)" +observation_source_concept_id,OBSERVATION.parquet,ID,,,"(nan, nan)" +unit_source_value,SPECIMEN.parquet,Empty,,,"(nan, nan)" +qualifier_source_value,OBSERVATION.parquet,Empty,,,"(nan, nan)" +cdm_source_name,CDM_SOURCE.parquet,String,,,"(nan, nan)" +cdm_source_abbreviation,CDM_SOURCE.parquet,String,,,"(nan, nan)" +cdm_holder,CDM_SOURCE.parquet,String,,,"(nan, nan)" +source_description,CDM_SOURCE.parquet,Empty,,,"(nan, nan)" +source_documentation_reference,CDM_SOURCE.parquet,Empty,,,"(nan, nan)" +cdm_etl_reference,CDM_SOURCE.parquet,String,,,"(nan, nan)" +source_release_date,CDM_SOURCE.parquet,String,,,"(nan, nan)" +cdm_release_date,CDM_SOURCE.parquet,String,,,"(nan, nan)" +cdm_version,CDM_SOURCE.parquet,String,,,"(nan, nan)" +vocabulary_version,CDM_SOURCE.parquet,Empty,,,"(nan, nan)" +device_exposure_id,DEVICE_EXPOSURE.parquet,ID,,,"(nan, nan)" +device_concept_id,DEVICE_EXPOSURE.parquet,ID,,,"(nan, nan)" +device_exposure_start_date,DEVICE_EXPOSURE.parquet,Empty,,,"(nan, nan)" +device_exposure_start_datetime,DEVICE_EXPOSURE.parquet,Empty,,,"(nan, nan)" +device_exposure_end_date,DEVICE_EXPOSURE.parquet,Empty,,,"(nan, nan)" +device_exposure_end_datetime,DEVICE_EXPOSURE.parquet,Empty,,,"(nan, nan)" +device_type_concept_id,DEVICE_EXPOSURE.parquet,ID,,,"(nan, nan)" +unique_device_id,DEVICE_EXPOSURE.parquet,ID,,,"(nan, nan)" +device_source_value,DEVICE_EXPOSURE.parquet,Empty,,,"(nan, nan)" +device_source_concept_id,DEVICE_EXPOSURE.parquet,ID,,,"(nan, nan)" +unit_source_concept_id,DEVICE_EXPOSURE.parquet,ID,,,"(nan, nan)" +PatientDurableKey,DEVICE_EXPOSURE.parquet,Empty,,,"(nan, nan)" +EncounterKey,DEVICE_EXPOSURE.parquet,Empty,,,"(nan, nan)" +measurement_id,MEASUREMENT.parquet,ID,,,"(nan, nan)" +measurement_concept_id,MEASUREMENT.parquet,ID,,,"(nan, nan)" +measurement_date,MEASUREMENT.parquet,String,,,"(nan, nan)" +measurement_type_concept_id,MEASUREMENT.parquet,ID,,,"(nan, nan)" +measurement_datetime,MEASUREMENT.parquet,Datetime,,,"(Timestamp('2015-03-17 00:00:00+0000', tz='GMT'), Timestamp('2024-06-12 13:06:00+0000', tz='GMT'))" +measurement_time,MEASUREMENT.parquet,Empty,,,"(nan, nan)" +operator_concept_id,MEASUREMENT.parquet,ID,,,"(nan, nan)" +range_low,MEASUREMENT.parquet,Numeric,2.8503950668036993,3.2763325842482325,"(np.float64(0.0), np.float64(10.0))" +range_high,MEASUREMENT.parquet,Numeric,20.252408221993836,106.2926255741677,"(np.float64(0.69), np.float64(2418.0))" +measurement_source_value,MEASUREMENT.parquet,Empty,,,"(nan, nan)" +measurement_source_concept_id,MEASUREMENT.parquet,ID,,,"(nan, nan)" +value_source_value,MEASUREMENT.parquet,Empty,,,"(nan, nan)" +note_date,NOTE.parquet,Empty,,,"(nan, nan)" +note_datetime,NOTE.parquet,Empty,,,"(nan, nan)" +note_type_concept_id,NOTE.parquet,ID,,,"(nan, nan)" +note_class_concept_id,NOTE.parquet,ID,,,"(nan, nan)" +note_title,NOTE.parquet,Empty,,,"(nan, nan)" +note_text,NOTE.parquet,Empty,,,"(nan, nan)" +encoding_concept_id,NOTE.parquet,ID,,,"(nan, nan)" +language_concept_id,NOTE.parquet,ID,,,"(nan, nan)" +note_source_value,NOTE.parquet,Empty,,,"(nan, nan)" +note_event_id,NOTE.parquet,ID,,,"(nan, nan)" +note_event_field_concept_id,NOTE.parquet,ID,,,"(nan, nan)" +place_of_service_concept_id,CARE_SITE.parquet,ID,,,"(nan, nan)" +care_site_name,CARE_SITE.parquet,String,,,"(nan, nan)" +care_site_source_value,CARE_SITE.parquet,Empty,,,"(nan, nan)" +place_of_service_source_value,CARE_SITE.parquet,Empty,,,"(nan, nan)" +TakenInstant,MS_QUESTIONNAIRE.parquet,Datetime,,,"(Timestamp('2019-04-02 11:00:00+0000', tz='UTC'), Timestamp('2024-06-12 21:31:00+0000', tz='UTC'))" +Value,MS_QUESTIONNAIRE.parquet,String,,,"(nan, nan)" +NumericValue,MS_QUESTIONNAIRE.parquet,Numeric,21219198338.57673,4008180525710.9575,"(np.float64(0.0), np.float64(900000000000000.0))" +DateValue,MS_QUESTIONNAIRE.parquet,Empty,,,"(nan, nan)" +TimeValue,MS_QUESTIONNAIRE.parquet,Empty,,,"(nan, nan)" +FlowsheetRowEpicId,MS_QUESTIONNAIRE.parquet,String,,,"(nan, nan)" +FlowsheetName,MS_QUESTIONNAIRE.parquet,String,,,"(nan, nan)" +DisplayName,MS_QUESTIONNAIRE.parquet,String,,,"(nan, nan)" +ValueType,MS_QUESTIONNAIRE.parquet,String,,,"(nan, nan)" +RowType,MS_QUESTIONNAIRE.parquet,String,,,"(nan, nan)" +MS_questionnaire_ID,MS_QUESTIONNAIRE.parquet,Numeric,82369.5,47555.76432200412,"(np.int32(1), np.int32(164738))" +observation_period_id,OBSERVATION_PERIOD.parquet,ID,,,"(nan, nan)" +observation_period_start_date,OBSERVATION_PERIOD.parquet,String,,,"(nan, nan)" +observation_period_end_date,OBSERVATION_PERIOD.parquet,String,,,"(nan, nan)" +period_type_concept_id,OBSERVATION_PERIOD.parquet,ID,,,"(nan, nan)" +visit_concept_id,VISIT_OCCURRENCE.parquet,ID,,,"(nan, nan)" +visit_start_date,VISIT_OCCURRENCE.parquet,String,,,"(nan, nan)" +visit_end_date,VISIT_OCCURRENCE.parquet,String,,,"(nan, nan)" +visit_type_concept_id,VISIT_OCCURRENCE.parquet,ID,,,"(nan, nan)" +visit_start_datetime,VISIT_OCCURRENCE.parquet,Datetime,,,"(Timestamp('2018-06-15 21:31:00+0000', tz='GMT'), Timestamp('2024-06-12 14:05:00+0000', tz='GMT'))" +visit_end_datetime,VISIT_OCCURRENCE.parquet,Datetime,,,"(Timestamp('2019-03-31 09:26:00+0000', tz='GMT'), Timestamp('2024-06-12 16:52:00+0000', tz='GMT'))" +visit_source_value,VISIT_OCCURRENCE.parquet,Empty,,,"(nan, nan)" +visit_source_concept_id,VISIT_OCCURRENCE.parquet,ID,,,"(nan, nan)" +admitting_source_concept_id,VISIT_OCCURRENCE.parquet,ID,,,"(nan, nan)" +admitting_source_value,VISIT_OCCURRENCE.parquet,String,,,"(nan, nan)" +discharge_to_concept_id,VISIT_OCCURRENCE.parquet,ID,,,"(nan, nan)" +discharge_to_source_value,VISIT_OCCURRENCE.parquet,String,,,"(nan, nan)" +preceding_visit_occurrence_id,VISIT_OCCURRENCE.parquet,ID,,,"(nan, nan)" +domain_concept_id_1,FACT_RELATIONSHIP.parquet,Numeric,1147318.0703192218,11.99982960882116,"(np.int32(1147304), np.int32(1147333))" +domain_concept_id_2,FACT_RELATIONSHIP.parquet,Numeric,1147318.0703192218,11.99982960882116,"(np.int32(1147304), np.int32(1147333))" +fact_id_1,FACT_RELATIONSHIP.parquet,Numeric,2702071.681122127,2509891.0187820303,"(np.int32(1), np.int32(6205790))" +fact_id_2,FACT_RELATIONSHIP.parquet,Numeric,2702071.681122127,2509891.0187820294,"(np.int32(1), np.int32(6205790))" +relationship_concept_id,FACT_RELATIONSHIP.parquet,ID,,,"(nan, nan)" +specimen_date,SPECIMEN.parquet,String,,,"(nan, nan)" +specimen_id,SPECIMEN.parquet,ID,,,"(nan, nan)" +specimen_concept_id,SPECIMEN.parquet,ID,,,"(nan, nan)" +specimen_type_concept_id,SPECIMEN.parquet,ID,,,"(nan, nan)" +specimen_datetime,SPECIMEN.parquet,Datetime,,,"(Timestamp('2010-01-01 14:54:59+0000', tz='GMT'), Timestamp('2024-06-12 19:49:00+0000', tz='GMT'))" +anatomic_site_concept_id,SPECIMEN.parquet,ID,,,"(nan, nan)" +disease_status_concept_id,SPECIMEN.parquet,ID,,,"(nan, nan)" +specimen_source_id,SPECIMEN.parquet,ID,,,"(nan, nan)" +specimen_source_value,SPECIMEN.parquet,Empty,,,"(nan, nan)" +anatomic_site_source_value,SPECIMEN.parquet,Empty,,,"(nan, nan)" +disease_status_source_value,SPECIMEN.parquet,Empty,,,"(nan, nan)" diff --git a/_projects/MS_PINPOINT/Data/DistributionOfValues copy.csv b/_projects/MS_PINPOINT/Data/DistributionOfValues copy.csv new file mode 100644 index 0000000..baf40ab --- /dev/null +++ b/_projects/MS_PINPOINT/Data/DistributionOfValues copy.csv @@ -0,0 +1,49 @@ +,parquet_file,field,value_counts +0,CARE_SITE.parquet,place_of_service_concept_id,{} +1,CONDITION_OCCURRENCE.parquet,condition_type_concept_id,"{32821: 82138, 32840: 13014, 32817: 2872, 32828: 140}" +2,CONDITION_OCCURRENCE.parquet,condition_concept_id,"{45571794: 15653, 4145049: 1918, 374919: 1865, 45576460: 1863, 45542849: 1580, 45591453: 1495, 45592414: 1482, 45557663: 1452, 45571760: 1331, 45571739: 1237, 45562456: 1172, 45595961: 859, 45595943: 745, 45537945: 739, 45573014: 658, 45591553: 645, 45605450: 605, 45591963: 602, 45538509: 563, 45543865: 539, 45606803: 516, 45587505: 494, 45542771: 482, 45577525: 466, 45561952: 465, 45587507: 458, 45573013: 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45562111: 6, 45603319: 6, 141663: 6, 4166859: 6, 4110815: 6}" +3,CONDITION_OCCURRENCE.parquet,condition_source_concept_id,{0: 98164} +4,CONDITION_OCCURRENCE.parquet,condition_source_value,"{'Multiple sclerosis': 17514, 'FINDINGS - TESTS - CARDIOLOGY TESTS - ECHOCARDI...': 2851, 'Relapsing remitting multiple sclerosis': 1918, 'Obesity, unspecified': 1863, 'Anxiety disorder, unspecified': 1580, 'Constipation': 1571, 'Essential (primary) hypertension': 1495, 'Cramp and spasm': 1482, 'Mental and behavioural disorders due to use of ...': 1367, 'Depressive episode, unspecified': 1331, 'Asthma, unspecified': 1172, 'Paraplegia, unspecified': 859, 'Migraine, unspecified': 745, 'Hypothyroidism, unspecified': 739, 'Faecal incontinence': 658, 'Allergic rhinitis due to pollen': 652, 'Mild cognitive disorder': 632, 'Osteoporosis, unspecified': 602, 'Gastro-oesophageal reflux disease without oesop...': 563, 'Other specified disorders of bladder': 539, 'Unspecified urinary incontinence': 516, 'Optic neuritis': 512, 'Retention of urine': 508, 'Other and unspecified symptoms and signs involv...': 500, 'Dysphagia': 491, 'Pure hypercholesterolaemia': 482, 'Other specified urinary incontinence': 466, 'Type 2 diabetes mellitus: without complications': 465, 'Urinary tract infection, site not specified': 453, 'Headache': 452, 'Acquired absence of genital organ(s)': 449, 'Other chronic pain': 442, 'Sleep apnoea': 396, 'Low back pain': 375, 'Trigeminal neuralgia': 364, 'Other inflammatory polyneuropathies': 357, 'Secondary progressive multiple sclerosis': 356, 'Vitamin D deficiency, unspecified': 340, 'Acquired absence of other parts of digestive tract': 328, 'Neuralgia and neuritis, unspecified': 319, 'Dorsalgia, unspecified': 307, 'Hypertension': 303, 'Epilepsy, unspecified': 302, 'Other specified disorders of bone density and s...': 297, 'Anaemia, unspecified': 295, 'Diaphragmatic hernia without obstruction or gan...': 269, 'Neuromyelitis optica (devic)': 268, 'Raynaud syndrome': 262, 'Sickle-cell anaemia without crisis': 252, 'Nausea and vomiting': 242, 'Polycystic ovarian syndrome': 241, 'Chronic ischaemic heart disease, unspecified': 240, 'Dizziness and giddiness': 240, 'Iron deficiency anaemia, unspecified': 239, 'Other and unspecified disturbances of skin sens...': 239, 'Atrial fibrillation and atrial flutter, unspeci...': 234, 'Hypotension, unspecified': 233, 'Fatty (change of) liver, not elsewhere classified': 232, 'COVID-19, virus identified': 225, 'Calculus of kidney': 220, 'Endometriosis, unspecified': 209, 'Decubitus ulcer and pressure area, unspecified': 206, 'Haemophagocytic lymphohistiocytosis': 205, 'Myasthenia gravis': 203, 'Primary progressive multiple sclerosis': 198, 'Dysphasia and aphasia': 196, 'Arthrosis, unspecified': 190, 'Disorders of initiating and maintaining sleep (...': 186, 'Sciatica': 177, 'Glaucoma, unspecified': 176, 'Asthma': 175, 'Paraesthesia of skin': 169, 'Cough': 167, 'Dermatitis, unspecified': 167, 'Visual disturbance, unspecified': 162, 'Fever, unspecified': 159, 'Spastic paraplegia': 159, 'Chronic obstructive pulmonary disease, unspecified': 157, 'Depression': 157, 'Scoliosis, unspecified': 156, 'Gastroenteritis and colitis of unspecified origin': 155, 'Tachycardia, unspecified': 154, 'Fibromyalgia': 153, 'Other specified polyneuropathies': 145, 'Mixed anxiety and depressive disorder': 143, 'Spasticity': 143, 'Other and unspecified convulsions': 141, 'Diverticular disease of intestine, part unspeci...': 140, 'Hypothyroidism': 140, 'Other diseases of vocal cords': 140, 'Other specified intervertebral disc displacement': 139, 'Pulmonary collapse': 139, 'Tremor, unspecified': 138, 'Other spondylosis: cervical region': 138, 'Other and unspecified abdominal pain': 138, 'Migraine': 137, 'Osteophyte: other': 137, 'Hyperplasia of prostate': 135, 'Deficiency of other specified B group vitamins': 135, 'Demyelinating disease of central nervous system...': 134, 'Escherichia coli (e. coli) as the cause of dise...': 132, 'Cyst of kidney': 130, 'Other visual disturbances': 130, 'Acute renal failure, unspecified': 130, 'Type 1 diabetes mellitus: without complications': 129, 'Polyneuropathy, unspecified': 128, 'Post-traumatic stress disorder': 128, 'Hemiplegia, unspecified': 127, 'Dyspnoea': 127, 'Old myocardial infarction': 125, 'Hearing loss, unspecified': 124, 'Carpal tunnel syndrome': 124, 'Congestive heart failure': 123, 'Psoriasis, unspecified': 123, 'Predominantly allergic asthma': 122, 'Acute myeloblastic leukaemia (aml)': 121, 'Optic atrophy': 121, 'Removal of other organ (partial) (total) as the...': 120, 'Haemorrhoids, unspecified': 120, 'Drug use': 120, 'Other specified cerebrovascular diseases': 118, 'Moyamoya disease': 115, 'Stage II decubitus ulcer': 115, 'Pleural effusion, not elsewhere classified': 115, 'Other retinal disorders in diseases classified ...': 114, 'Osteoporosis': 113, 'Diplopia': 113, 'Anxiety': 112, 'Hypercholesterolaemia': 112, 'Other and unspecified speech disturbances': 111, 'Bronchiectasis': 111, 'Other and unspecified abnormal involuntary move...': 111, 'Hypo-osmolality and hyponatraemia': 110, 'Polyuria': 107, 'Diverticular disease of large intestine without...': 106, 'Nerve root and plexus compressions in intervert...': 106, 'Benign paroxysmal vertigo': 106, 'Cataract, unspecified': 105, 'Cervicalgia': 103, 'Iron deficiency': 103, 'Noninfective gastroenteritis and colitis, unspe...': 101, 'Tetraplegia, unspecified': 101, 'Stress incontinence': 100, 'Thalassaemia, unspecified': 100, 'Rash and other nonspecific skin eruption': 99, 'Agranulocytosis': 98, 'Spinal stenosis: cervical region': 96, 'Dental caries, unspecified': 96, 'Leiomyoma of uterus, unspecified': 96, 'Type 2 diabetes mellitus': 95, 'Impotence of organic origin': 95, 'Orthostatic hypotension': 94, 'Systemic lupus erythematosus, unspecified': 93, 'Ulcerative colitis, unspecified': 92, 'Scoliosis, unspecified: thoracic region': 92, 'Generalized idiopathic epilepsy and epileptic s...': 90, 'Ataxia, unspecified': 90, 'Calculus in bladder': 90, 'Coronavirus as the cause of diseases classified...': 90, 'Lumbar and other intervertebral disc disorders ...': 89, 'Single live birth': 89, 'Parkinson disease': 88, 'Chest pain, unspecified': 88, 'Disorders of phosphorus metabolism and phosphat...': 87, 'Pain in limb: multiple sites': 87, 'Rheumatoid arthritis, unspecified': 87, 'Other specified intervertebral disc degeneration': 86, 'Visual field defects': 86, 'Diabetic retinopathy': 86, 'Lobar pneumonia, unspecified': 85, 'Thyrotoxicosis with diffuse goitre': 83, 'Drug-induced osteoporosis': 83, 'Stiffness of joint, not elsewhere classified: l...': 82, 'Acquired absence of other organs': 82, 'Pain in joint: shoulder region': 82, 'Postprocedural hypothyroidism': 82, 'Bipolar affective disorder, unspecified': 81, 'Lymphoedema, not elsewhere classified': 79, 'Gonarthrosis, unspecified': 79, 'Spinal stenosis: lumbar region': 78, 'Resistance to penicillin': 78, 'Other specified disorders of skin and subcutane...': 78, 'Disease of spinal cord, unspecified': 78, 'Emphysema, unspecified': 78, 'Hypokalaemia': 77, 'Coeliac disease': 77, 'Disturbance of activity and attention': 77, 'Paraplegia': 76, 'Other medical procedures as the cause of abnorm...': 76, 'Sarcoidosis of other and combined sites': 76, 'Pain in joint: pelvic region and thigh': 75, 'Ulcer of lower limb, not elsewhere classified': 75, 'Sepsis, unspecified': 75, 'Pneumonia, unspecified': 75, 'Epilepsy': 75, 'Unspecified dementia': 74, 'Delirium, unspecified': 74, 'Other specified diseases of stomach and duodenum': 73, 'Stage IV decubitus ulcer': 73, 'Palpitations': 72, 'Clinically isolated syndrome': 72, 'Gastritis, unspecified': 71, 'Other spondylosis: lumbar region': 71, 'Other specified disorders of white blood cells': 71, 'Postviral fatigue syndrome': 71, 'Migraine without aura (common migraine)': 71, 'Other specified headache syndromes': 71, 'Calculus of gallbladder without cholecystitis': 70, 'Localization-related (focal)(partial) symptomat...': 70, 'Gastric ulcer: unspecified as acute or chronic,...': 70, 'Secondary and unspecified malignant neoplasm: a...': 70, 'Nystagmus and other irregular eye movements': 70, 'Stiffness of joint, not elsewhere classified: m...': 70, 'Pain, unspecified': 70, 'Ehlers-Danlos syndrome': 69, 'Unspecified visual impairment (binocular)': 69, 'Overactive bladder': 69, 'Polyp of colon': 68, 'Chronic kidney disease, stage 3': 68, 'Abnormal findings on microbiological examinatio...': 68, 'Bone-marrow transplant rejection': 67, 'Arthropathic psoriasis': 67, 'Nosocomial condition': 67, 'Varicose veins of lower extremities without ulc...': 66, 'Lactose intolerance, unspecified': 66, 'Other psoriatic arthropathies': 66, 'Other specified diseases of liver': 65, 'Other sleep disorders': 65, 'Thyrotoxicosis, unspecified': 64, 'Pain in limb: lower leg': 64, 'Developmental disorder of scholastic skills, un...': 64, 'Unspecified haematuria': 63, 'Other disorders of lung': 63, 'Malignant neoplasm: breast, unspecified': 63, 'Secondary malignant neoplasm of liver and intra...': 63, 'Other amnesia': 63, 'Heart failure, unspecified': 63, 'Other specified disorders of brain': 62, 'Dissociative convulsions': 62, 'Schizophrenia, unspecified': 62, 'Other specified symptoms and signs involving th...': 61, 'Myopia': 61, 'Local infection of skin and subcutaneous tissue...': 61, 'Arthritis, unspecified': 61, 'Pain in joint: lower leg': 61, 'Musculoskeletal immobility': 61, 'Atherosclerotic heart disease': 61, 'Other specified demyelinating diseases of centr...': 60, 'Cellulitis of other parts of limb': 60, 'Paralysis of vocal cords and larynx': 59, 'Other and unspecified lack of coordination': 59, 'Urticaria, unspecified': 59, 'Migraine with aura (classical migraine)': 58, 'Acute transverse myelitis in demyelinating dise...': 58, 'Paroxysmal atrial fibrillation': 58, 'Blindness, monocular': 58, 'Pain localized to upper abdomen': 58, 'Other diseases of pharynx': 58, 'Dysarthria and anarthria': 58, 'Other ill-defined heart diseases': 56, 'Other specified bacterial agents as the cause o...': 56, 'Type 2 diabetes mellitus: with ophthalmic compl...': 56, 'Sickle-cell trait': 56, 'Diabetes mellitus': 56, 'Other specified extrapyramidal and movement dis...': 56, 'Haemangioma, any site': 55, 'Myelopathy in diseases classified elsewhere': 55, 'Sicca syndrome (sjögren)': 55, 'Cerebral palsy, unspecified': 55, 'Pruritus, unspecified': 55, 'Localized oedema': 55, 'OA - Osteoarthrosis': 54, 'Mouth breathing': 54, 'Pneumonitis due to food and vomit': 54, 'Spondylosis, unspecified': 54, 'Unstable angina': 54, 'Neuralgia and neuritis, unspecified: multiple s...': 54, 'Maternal care for other specified fetal problems': 54, 'Diabetic polyneuropathy': 54, 'Hyperlipidaemia, unspecified': 54, 'Idiopathic thrombocytopenic purpura': 54, 'Sensorineural hearing loss, unspecified': 53, 'Bradycardia, unspecified': 52, 'Infection and inflammatory reaction due to pros...': 52, 'Chronic pain': 51, 'Cardiomegaly': 51, 'Muscular dystrophy': 51, 'Radiological procedure and radiotherapy as the ...': 51, 'Acquired absence of breast(s)': 51, 'Barrett oesophagus': 51, 'Other cervical disc degeneration': 51, 'Malignant neoplasm of prostate': 50, 'Peripheral vascular disease, unspecified': 50, 'Other and unspecified right bundle-branch block': 50, 'Degenerative disease of nervous system, unspeci...': 50, 'Panic disorder (episodic paroxysmal anxiety)': 50, 'Other spondylosis: multiple sites in spine': 50, 'Other specified immunodeficiencies': 50, 'Hyposplenism': 49, 'Other interstitial pulmonary diseases with fibr...': 49, 'Dyslexia and alexia': 49, 'Mental disorders and diseases of the nervous sy...': 49, 'Pseudomonas (aeruginosa) as the cause of diseas...': 49, 'Guillain-barré syndrome': 48, 'Acute pharyngitis, unspecified': 48, 'Hypermobility syndrome': 48, 'Gout, unspecified': 47, 'Mechanical complication of urinary (indwelling)...': 47, 'Neurogenic bowel, not elsewhere classified': 47, 'Cardiac arrhythmia, unspecified': 47, 'Volume depletion': 47, 'Ankylosing spondylitis': 47, 'Thalassaemia trait': 47, 'Nonfamilial hypogammaglobulinaemia': 47, 'Obsessive-compulsive disorder, unspecified': 46, 'Chronic obstructive pulmonary disease with acut...': 46, 'Specific (isolated) phobias': 46, 'Malignant tumour of breast': 46, 'Irritant contact dermatitis due to other agents': 46, 'COPD - Chronic obstructive pulmonary disease': 46, 'Neuromyelitis optica': 45, 'Surgical operation with implant of artificial i...': 45, 'Stiffness of joint, not elsewhere classified': 45, 'Incontinence of faeces': 45, 'Other thrombophilia': 45, 'Myalgia': 45, 'Exophthalmic conditions': 44, 'Fluid overload': 44, 'Other specified soft tissue disorders: ankle an...': 44, 'Stress fracture, not elsewhere classified: pelv...': 44, 'Mild mental retardation: without mention of imp...': 44, 'Thrombocytopenia, unspecified': 44, 'Emotionally unstable personality disorder': 44, 'AF - Atrial fibrillation': 43, 'Chronic sinusitis, unspecified': 43, 'Iridocyclitis, unspecified': 43, 'Benign neoplasm: pituitary gland': 43, 'Resistance to other single specified antibiotic': 42, 'Other cervical disc displacement': 42, 'Chronic kidney disease, unspecified': 42, 'Other disorders of lacrimal gland': 42, 'Coxarthrosis, unspecified': 42, 'Maternal care due to uterine scar from previous...': 41, 'Secondary and unspecified malignant neoplasm: i...': 41, 'Secondary malignant neoplasm of bone and bone m...': 41, 'Recurrent urinary tract infection': 41, 'Other delirium': 41, 'Other obesity': 41, 'Myoclonus': 41, 'Pain localized to other parts of lower abdomen': 41, 'Alzheimer disease, unspecified': 41, 'Malignant neoplasm: upper-inner quadrant of breast': 40, 'Gastrooesophageal reflux disease': 40, 'Acute nasopharyngitis (common cold)': 40, 'Other specified pregnancy-related conditions': 40, 'Secondary malignant neoplasm of retroperitoneum...': 40, 'Generalized anxiety disorder': 40, 'Resistance to multiple antibiotics': 40, 'Peritoneal adhesions': 40, 'Disorders of calcium metabolism': 39, 'Cauda equina syndrome': 39, 'Psoriasis': 39, 'Chronic kidney disease, stage 2': 39, 'Neuralgia and neuritis, unspecified: lower leg': 39, 'Incisional hernia without obstruction or gangrene': 39, 'Cerebral aneurysm, nonruptured': 39, 'Gastro-oesophageal reflux disease with oesophag...': 39, 'Disorders of both mitral and tricuspid valves': 38, 'UTI - Urinary tract infection': 38, 'Nontoxic multinodular goitre': 38, 'Blindness, binocular': 38, 'Diabetes mellitus arising in pregnancy': 38, 'Dementia in Alzheimer disease, unspecified': 38, 'Acidosis': 38, 'Hereditary spastic paraplegia': 38, 'Autoimmune thyroiditis': 37, 'Pain in joint: multiple sites': 37, 'Multiple myeloma': 37, 'Unilateral or unspecified inguinal hernia, with...': 37, 'Atrioventricular block, first degree': 37, 'Other and unspecified abnormalities of breathing': 37, 'Respiratory failure, unspecified: type I (hypoxic)': 36, 'Disorders of plasma-protein metabolism, not els...': 36, 'Autoimmune hepatitis': 36, 'Reflex neuropathic bladder, not elsewhere class...': 36, 'Tracheostomy status': 36, 'Unspecified diabetes mellitus: without complica...': 35, 'Nontoxic single thyroid nodule': 35, 'Oesophagitis': 35, 'Other chest pain': 35, 'Diverticulum of bladder': 35, 'Irritable bowel syndrome': 35, 'Gastrointestinal haemorrhage, unspecified': 35, 'Fasciculation': 35, 'Rectal prolapse': 35, 'Ischaemic heart disease': 34, 'Deep venous thrombosis': 34, 'Type 2 diabetes mellitus: with neurological com...': 34, 'Other and unspecified adrenocortical insufficiency': 34, 'Idiopathic urticaria': 34, 'Temporomandibular joint disorders': 34, 'Sensorineural hearing loss, bilateral': 34, 'Stroke': 34, 'Other specified respiratory disorders': 33, 'Congenital hydrocephalus, unspecified': 33, 'Progressive multifocal leukoencephalopathy': 33, 'Other specified degenerative diseases of nervou...': 33, 'Klebsiella pneumoniae (k. pneumoniae) as the ca...': 32, 'Polyarthrosis, unspecified': 32, 'Seronegative rheumatoid arthritis': 32, 'Left bundle-branch block, unspecified': 32, 'Stage III decubitus ulcer': 32, 'PE - Pulmonary embolism': 32, 'Adhesive capsulitis of shoulder': 32, 'Cervical disc disorder with myelopathy': 32, 'Other iron deficiency anaemias': 32, 'Thrombotic microangiopathy': 32, 'Induratio penis plastica': 31, 'Sarcoidosis': 31, 'Iron deficiency anaemia': 31, 'Monoclonal gammopathy of undetermined significa...': 31, 'Other viral pneumonia': 31, 'Other gastritis': 31, ""Parkinson's disease"": 31, 'Immunodeficiency associated with other specifie...': 31, 'Surgical operation with transplant of whole org...': 31, 'Hypopituitarism': 30, 'Demyelinating disease of central nervous system': 30, 'Benign neoplasm: meninges, unspecified': 30, 'Kidney stone': 30, 'Arteritis, unspecified': 30, 'Acquired absence of part of stomach': 30, 'Other specified disorders of muscle': 30, 'Arthrosis, unspecified: shoulder region': 30, 'Volvulus': 29, 'Aortic (valve) insufficiency': 29, 'Osteopenia': 29, 'Chronic periodontitis': 29, 'Pain in joint': 29, 'Neuropathic pain': 29, 'Tricuspid insufficiency': 29, 'Other specified functional intestinal disorders': 29, 'Staphylococcus aureus as the cause of diseases ...': 29, 'Other and unspecified intestinal obstruction': 29, 'Dilated cardiomyopathy': 29, 'Disorder of brain, unspecified': 29, 'Other viral infections of unspecified site': 28, 'Other specified soft tissue disorders: lower leg': 28, 'Proteus (mirabilis)(morganii) as the cause of d...': 28, 'Malignant neoplasm: upper-outer quadrant of breast': 28, 'Nonorganic insomnia': 28, 'Other specified diseases of intestine': 28, 'Other disorders of pituitary gland': 28, 'Heartburn': 28, 'Pain in limb: upper arm': 28, 'Pulmonary embolism without mention of acute cor...': 28, 'Hydrocephalus, unspecified': 28, 'Pain': 27, 'Type 1 diabetes mellitus: with ophthalmic compl...': 27, 'Primary thrombophilia': 27, 'Stage I decubitus ulcer and pressure area': 27, 'Cystic kidney disease, unspecified': 27, 'Mitral (valve) insufficiency': 27, 'Hypersplenism': 27, 'Malignant neoplasm: lower-outer quadrant of breast': 27, 'Malignant tumour of prostate': 27, 'Sarcoidosis, unspecified': 27, 'Retrobulbar optic neuritis of left eye': 27, 'Respiratory failure, unspecified: type II (hype...': 27, 'Labour and delivery complicated by fetal heart ...': 27, 'Moderate cervical dysplasia': 27, 'Benign neoplasm: transverse colon': 27, 'Radiculopathy': 27, 'Nonscarring hair loss, unspecified': 27, 'Collapsed vertebra, not elsewhere classified: t...': 27, 'Ptosis of eyelid': 26, 'Encephalitis, myelitis and encephalomyelitis, u...': 26, 'Other specified forms of tremor': 26, 'Impaired cognition': 26, 'Radiculopathy: lumbar region': 26, 'Stiffness of joint, not elsewhere classified: o...': 26, 'Other and unspecified ovarian cysts': 26, 'Urethral stricture, unspecified': 26, 'Stridor': 26, 'Keratoconjunctivitis': 26, 'Polyp of corpus uteri': 26, 'Cluster headache syndrome': 26, 'Resistance to other betalactam antibiotics': 26, 'Other specified diseases and conditions complic...': 26, 'Varicose veins of lower extremities with inflam...': 26, 'Internuclear ophthalmoplegia': 25, 'Urinary incontinence': 25, 'Cushing syndrome, unspecified': 25, 'Type 2 diabetes mellitus: with peripheral circu...': 25, 'Hypoglycaemia, unspecified': 25, 'Secondary and unspecified malignant neoplasm: l...': 25, 'Other surgical procedures as the cause of abnor...': 25, 'Multiple system atrophy, parkinsonian type (msa-p)': 25, 'Delirium': 25, 'Carcinoma in situ: cervix, unspecified': 25, 'Oesophageal obstruction': 25, ""Graves' disease"": 25, 'Sequelae of cerebral infarction': 25, 'Polyneuropathy in other diseases classified els...': 25, 'Hereditary motor and sensory neuropathy': 25, 'Other specified disorders of central nervous sy...': 25, 'Primary ovarian failure': 24, 'Seizure': 24, 'Syringomyelia and syringobulbia': 24, 'Rotator cuff syndrome': 24, 'Anaemia': 24, 'Organ-limited amyloidosis': 24, 'Localized enlarged lymph nodes': 24, 'Cystitis, unspecified': 24, 'Sequelae of stroke, not specified as haemorrhag...': 24, 'Bell palsy': 24, 'Hypothyroidism due to medicaments and other exo...': 24, 'Diabetes insipidus': 24, 'Polyp of stomach and duodenum': 24, 'Hereditary ataxia, unspecified': 24, 'Vitamin D deficiency': 24, 'Motor neuron disease': 24, 'Disease of intestine, unspecified': 24, 'Chronic gastritis, unspecified': 24, 'Tinea pedis': 24, 'Dizziness': 23, 'Hyperglycaemia, unspecified': 23, 'Streptococcus group d and Enterococcus as the c...': 23, 'Other specified neoplasms of uncertain or unkno...': 23, 'Polycystic ovary syndrome': 23, 'Endometriosis (clinical)': 23, 'Eczema': 23, 'Secondary polycythaemia': 23, 'Dysphasia': 23, 'Angina pectoris, unspecified': 23, 'Surgical operation with formation of external s...': 23, 'Sleep disorder, unspecified': 23, 'Occlusion and stenosis of carotid artery': 23, 'Disorder of skin and subcutaneous tissue, unspe...': 23, 'Benign neoplasm: sigmoid colon': 23, 'Stiffness of joint, not elsewhere classified: u...': 23, 'Other and unspecified hydronephrosis': 23, 'Juvenile rheumatoid arthritis': 22, 'Hyperkalaemia': 22, 'Haemorrhage of anus and rectum': 22, 'Other and unspecified kyphosis': 22, 'Other specified diseases of anus and rectum': 22, 'Somnolence': 22, 'Osteomyelitis, unspecified: ankle and foot': 22, 'Nerve root and plexus compressions in spondylosis': 22, 'Progressive multiple sclerosis': 22, 'Other specified disorders of nose and nasal sin...': 22, 'Erythematous condition, unspecified': 22, 'Paralytic strabismus, unspecified': 22, 'Cerebral cysts': 22, 'Supraventricular tachycardia': 22, 'Other specified disorders of eye and adnexa': 22, 'Rosacea, unspecified': 22, 'Centrilobular emphysema': 22, 'Other immediate postpartum haemorrhage': 22, 'Aplastic anaemia, unspecified': 22, 'Tension-type headache': 22, 'Other secondary pulmonary hypertension': 22, 'Childhood autism': 22, 'Endometriosis of uterus': 22, 'Obstructive sleep apnoea syndrome': 21, 'Retained dental root': 21, 'Sepsis due to other gram-negative organisms': 21, 'Cystocele': 21, 'Joint pain': 21, 'Disorders of excessive somnolence (hypersomnias)': 21, 'Unspecified contracted kidney': 21, 'Acquired absence of other organs of urinary tract': 21, 'Spastic diplegic cerebral palsy': 21, 'Other specified degenerative disorders of nervo...': 21, 'Drug-induced Cushing syndrome': 21, 'Other encephalitis, myelitis and encephalomyelitis': 21, 'Hyperosmolality and hypernatraemia': 21, 'Transverse myelopathy syndrome': 21, 'Pain in limb: ankle and foot': 21, 'Dissociative motor disorders': 20, 'Disorder of vestibular function, unspecified': 20, 'Pain in limb: hand': 20, 'Type 1 diabetes mellitus': 20, 'Chronic apical periodontitis': 20, 'Radiculopathy: cervical region': 20, 'COVID-19': 20, 'Unspecified acute lower respiratory infection': 20, 'Immune reconstitution syndrome': 20, 'Other migraine': 20, 'Other specified diseases of blood and blood-for...': 20, 'Other specified diseases of oesophagus': 20, 'Contracture of joint: lower leg': 20, 'Palmar fascial fibromatosis (dupuytren)': 20, 'Osteonecrosis, unspecified: pelvic region and t...': 20, 'Other specified diseases of gallbladder': 20, 'Epistaxis': 19, 'Other specified diseases of pancreas': 19, 'Cardiomyopathy, unspecified': 19, 'Pericardial effusion (noninflammatory)': 19, 'Antiphospholipid syndrome': 19, 'Scoliosis deformity of spine': 19, 'Maternal care for poor fetal growth': 19, 'Spondylolisthesis: lumbosacral region': 19, 'Influenza with other respiratory manifestations...': 19, 'Other forms of stomatitis': 19, 'Other specified cardiac arrhythmias': 19, 'Extended spectrum betalactamase (ESBL) resistance': 19, 'Other and unspecified skin changes': 19, 'Fracture of neck of femur: closed': 19, 'Benign intracranial hypertension': 19, 'Cerebrovascular disease, unspecified': 19, 'Sequelae of other specified infectious and para...': 19, 'Chronic back pain': 19, 'Encephalopathy, unspecified': 19, 'Calculus of bile duct without cholangitis or ch...': 19, 'Spondylolisthesis: lumbar region': 19, 'Glaucoma': 19, 'Acne vulgaris': 19, 'Mechanical complication of other urinary device...': 18, 'Ocular pain': 18, 'Disorder of autonomic nervous system, unspecified': 18, 'EPIC USE ONLY - CARDIOLOGY - ECHO FINDINGS - LE...': 18, 'Oral mucositis (ulcerative)': 18, 'Dysphonia': 18, 'Syndrome of inappropriate secretion of antidiur...': 18, 'Umbilical hernia without obstruction or gangrene': 18, 'Postpartum haemorrhage': 18, 'Trigger finger': 18, 'Malfunction of external stoma of urinary tract': 18, 'Postmenopausal osteoporosis': 18, 'Dry eyes': 18, 'Dementia in other specified diseases classified...': 18, 'Cervical disc disorder with radiculopathy': 18, 'Malignant neoplasm: upper third of oesophagus': 17, 'Other seasonal allergic rhinitis': 17, 'Primary adrenocortical insufficiency': 17, 'Gilbert syndrome': 17, 'Blepharitis': 17, 'Duodenitis': 17, 'Vitamin B12 deficiency anaemia due to intrinsic...': 17, 'Splenomegaly, not elsewhere classified': 17, 'Deviated nasal septum': 17, 'Cerebral oedema': 17, 'Acquired absence of kidney': 17, 'Hidradenitis suppurativa': 17, 'Infection following a procedure, not elsewhere ...': 17, 'Seropositive rheumatoid arthritis, unspecified': 17, 'Functional dyspepsia': 17, 'Other noninflammatory disorders of ovary, fallo...': 17, 'Disturbances of salivary secretion': 17, 'Hyperhidrosis, unspecified': 17, 'Neurogenic bowel': 17, 'Hiatal hernia': 17, 'Benign neoplasm: ascending colon': 17, 'Other specified diseases of biliary tract': 17, 'Thyrotoxicosis': 17, 'Cerebral infarction, unspecified': 17, 'Delusional disorder': 17, 'Crohn disease, unspecified': 17, 'Essential (haemorrhagic) thrombocythaemia': 17, 'Other nerve root and plexus disorders': 17, ""Crohn's disease"": 17, 'Other congenital deformities of hip': 17, 'Anxiety disorder': 17, 'Double incontinence': 17, 'Unspecified sexual dysfunction, not caused by o...': 17, 'Unspecified abdominal hernia without obstructio...': 17, 'Other congenital deformities of feet': 16, 'Nontoxic goitre, unspecified': 16, 'Heterophoria': 16, 'Type 1 diabetes mellitus: with neurological com...': 16, 'Spinal stenosis': 16, 'Generalized skin eruption due to drugs and medi...': 16, 'Paranoid schizophrenia': 16, 'Resistance to methicillin': 16, 'Other urticaria': 16, 'Oedema, unspecified': 16, 'Bladder disorder, unspecified': 16, 'Impacted cerumen': 16, 'Other bacterial infections of unspecified site': 16, 'Other spondylosis with myelopathy: cervical region': 16, 'Neoplasm of uncertain or unknown behaviour: bra...': 16, 'Acquired absence of foot and ankle': 16, 'Second degree perineal laceration during delivery': 16, 'Restless legs': 16, 'Hypermetropia': 16, 'Other disorders of autonomic nervous system': 16, 'Disruption of operation wound, not elsewhere cl...': 16, 'Essential tremor': 16, 'Extrapyramidal and movement disorder, unspecified': 16, 'Status epilepticus, unspecified': 16, 'Benign meningioma': 16, 'Polyarteritis with lung involvement (churg-stra...': 16, 'Other specified intervertebral disc disorders': 16, 'Acne, unspecified': 16, 'Normal-pressure hydrocephalus': 16, 'Pain in limb: pelvic region and thigh': 16, 'Atrial septal defect': 16, 'Disorders of diaphragm': 16, 'Pre-excitation syndrome': 16, 'Functional intestinal disorder, unspecified': 16, 'Neuralgia and neuritis, unspecified: upper arm': 16, 'Neurosarcoidosis': 16, 'Other specified fever': 16, 'Migrainous vertigo': 16, 'Dysuria': 15, 'Abdominal aortic aneurysm, without mention of r...': 15, 'Phlebitis and thrombophlebitis of other deep ve...': 15, 'Dyskinesia of oesophagus': 15, 'Endometriosis of rectovaginal septum and vagina': 15, 'Localisation-related epilepsy': 15, 'Malignant neoplasm: endometrium': 15, 'Residual haemorrhoidal skin tags': 15, 'Abdominal pain': 15, 'Other Crohn disease': 15, 'Inflammatory arthritis': 15, 'Type 2 diabetes mellitus: with other specified ...': 15, 'Abnormal findings in specimens from digestive o...': 15, 'RA - Rheumatoid arthritis': 15, 'Candidal stomatitis': 15, 'Gangrene, not elsewhere classified': 15, 'Dystonia': 15, 'Urgent desire to urinate': 15, 'Conduction disorder, unspecified': 15, 'Nerve root and plexus disorder, unspecified': 15, 'Actinic keratosis': 15, 'Follicular lymphoma grade II': 15, 'Other specified disorders of kidney and ureter': 15, 'Haemorrhage and haematoma complicating a proced...': 15, 'Gout': 15, 'Other disorders of vestibular function': 15, 'Sequelae of adverse effects caused by drugs, me...': 15, 'Acquired absence of lung (part of)': 15, 'Benign paroxysmal positional vertigo': 15, 'Incontinence': 15, 'Seasonal allergic rhinitis': 15, 'Maternal care for cervical incompetence': 15, 'Sixth (abducent) nerve palsy': 15, 'Chronic fatigue syndrome': 15, 'Schmorl nodes': 15, 'Sarcoidosis of lung': 15, 'Divergent concomitant strabismus': 15, 'Melanocytic naevi of trunk': 15, 'Erectile dysfunction': 15, 'Other spondylosis: lumbosacral region': 15, 'Benign neoplasm: cerebral meninges': 15, 'Nerve root and plexus compressions in other dor...': 15, 'Urinary bladder stone': 15, 'Other specified disorders of teeth and supporti...': 14, 'Primary hyperparathyroidism': 14, 'Abnormal uterine and vaginal bleeding, unspecified': 14, 'Muscle wasting and atrophy, not elsewhere class...': 14, 'Hyperthyroidism': 14, 'Alcoholic cirrhosis of liver': 14, 'Essential hypertension': 14, 'Melanocytic naevi, unspecified': 14, 'Delirium superimposed on dementia': 14, 'Unspecified nonorganic psychosis': 14, ""Raynaud's disease"": 14, 'Combined disorders of mitral, aortic and tricus...': 14, 'Uterovaginal prolapse, unspecified': 14, 'Lumbago with sciatica': 14, 'Bipolar disorder': 14, 'Unspecified mood (affective) disorder': 14, 'Visual hallucinations': 14, 'Other intestinal malabsorption': 14, 'Pulmonary emphysema': 14, 'Cellulitis, unspecified': 14, 'Pyonephrosis': 14, 'Backache': 14, 'Transformed migraine': 14, 'Gestational diabetes mellitus': 14, 'Lesion of ulnar nerve': 14, 'Malignant neoplasm of thyroid gland': 14, 'Transient cerebral ischaemia': 14, 'Temporomandibular joint disorder': 14, 'Unspecified osteoporosis with pathological frac...': 14, 'Steatosis of liver': 13, 'Benign lipomatous neoplasm, unspecified': 13, 'Malignant neoplasm: skin of other and unspecifi...': 13, 'Severe depressive episode with psychotic symptoms': 13, 'Migraine with aura': 13, 'Malignant neoplasm: overlapping lesion of femal...': 13, 'Other specified diabetes mellitus: without comp...': 13, 'Haemoptysis': 13, 'Chronic low back pain': 13, 'Cerebrospinal fluid leak': 13, 'Acid reflux': 13, 'Malignant neoplasm of ovary': 13, 'Other spondylosis: cervicothoracic region': 13, 'Bowel dysfunction': 13, 'Other allergic rhinitis': 13, 'Streptococcus, group B, as the cause of disease...': 13, 'Reflex incontinence of urine': 13, 'Erythema intertrigo': 13, 'Sickle-cell anaemia with crisis': 13, 'Obesity': 13, 'Other and unspecified lesions of oral mucosa': 13, 'Other specified haemorrhoids': 13, 'Achalasia of cardia': 13, 'Arnold-Chiari syndrome': 13, 'Acquired absence of part of head and neck': 13, 'Pulmonary valve insufficiency': 13, 'Other specified disorders of adrenal gland': 13, 'Posttraumatic stress disorder': 13, 'Sacrococcygeal disorders, not elsewhere classified': 13, 'Uveitis': 13, 'Cervical myelopathy': 13, 'Enterocolitis due to Clostridium difficile': 13, 'Chronic rhinitis': 13, 'Ménière disease': 13, 'Other specified disorders of male genital organs': 13, 'Hereditary retinal dystrophy': 12, 'Unspecified injury of head': 12, 'Psoriatic arthritis': 12, 'Other specified sepsis': 12, 'Renal agenesis, unilateral': 12, 'Fracture of neck of femur': 12, 'Dementia': 12, 'Polycythaemia vera': 12, 'Candidiasis of other sites': 12, 'Fourth (trochlear) nerve palsy': 12, 'Tubulo-interstitial nephritis, not specified as...': 12, 'Hydronephrosis with renal and ureteral calculou...': 12, 'Pressure ulcer of sacral region': 12, 'Ascites': 12, 'Iron deficiency anaemia secondary to blood loss...': 12, 'Phobic anxiety disorder, unspecified': 12, 'Impacted teeth': 12, 'SLE - Systemic lupus erythematosus': 12, 'Malignant neoplasm: bronchus or lung, unspecified': 12, 'Pulmonary valve stenosis': 12, 'Diffuse large B-cell lymphoma': 12, 'Other cervical disc disorders': 12, 'Myelitis': 12, 'Ulcerative colitis': 12, 'Sprain and strain of other and unspecified part...': 12, 'Benign prostatic hyperplasia': 12, 'Acute upper respiratory infection, unspecified': 12, 'Alkalosis': 12, 'Subdural haemorrhage (acute)(nontraumatic)': 12, 'Other specific joint derangements, not elsewher...': 12, 'Scoliosis, unspecified: lumbar region': 12, 'Mechanical complication of other specified inte...': 12, 'Hearing loss': 12, 'Septic shock': 11, 'Other spondylosis with radiculopathy: cervical ...': 11, 'Aspiration pneumonia': 11, 'Other and unspecified kyphosis: thoracic region': 11, 'Chronic lymphocytic leukaemia of b-cell type': 11, 'Candidiasis of other urogenital sites': 11, 'Cerebral infarction due to unspecified occlusio...': 11, 'Diarrhoea': 11, 'Fracture of lumbar vertebra: closed': 11, 'Sepsis': 11, 'Duodenal ulcer: unspecified as acute or chronic...': 11, 'Benign neoplasm: cranial nerves': 11, 'Neuralgia and neuritis, unspecified: ankle and ...': 11, 'Polymyalgia rheumatica': 11, 'Chronic kidney disease, stage 5': 11, 'Nerve root and plexus compressions in other dis...': 11, 'Sensorineural hearing loss': 11, 'Wegener granulomatosis': 11, ""Sjögren's syndrome"": 11, 'Other specified disorders involving the immune ...': 11, 'Other specified soft tissue disorders: hand': 11, 'Zoster with other nervous system involvement': 11, 'Left ventricular failure': 11, 'Diverticular disease': 11, 'Other disorders of vitreous body': 11, 'Benign neoplasm: adrenal gland': 11, 'Amblyopia ex anopsia': 11, 'Other specified paralytic syndromes': 11, 'Myocardial infarction': 11, 'Benign lipomatous neoplasm of other sites': 11, 'Zoster without complication': 11, 'Surgical operation with anastomosis, bypass or ...': 11, 'Female pelvic peritoneal adhesions': 11, 'Other specified noninfective gastroenteritis an...': 11, 'Effusion of joint: lower leg': 11, 'Other specified soft tissue disorders: multiple...': 11, 'Acquired absence of leg above knee': 11, 'Arthrosis, unspecified: hand': 11, 'Seborrhoeic keratosis': 11, 'Fibroids': 11, 'Disorders of both aortic and tricuspid valves': 11, 'Benign neoplasm: caecum': 11, 'Left anterior fascicular block': 11, 'Spondylolisthesis: cervical region': 11, 'Abnormal findings in specimens from other organ...': 11, 'Diverticulitis': 11, 'Herpes zoster': 11, 'Interstitial pulmonary disease, unspecified': 11, 'Osteomyelitis of vertebra: sacral and sacrococc...': 10, 'Rectal polyp': 10, 'Other autoimmune haemolytic anaemias': 10, 'Hyponatraemia': 10, 'Anal fistula': 10, 'Acute ischaemic heart disease, unspecified': 10, 'Acute relapsing multiple sclerosis': 10, 'Infection and inflammatory reaction due to othe...': 10, 'Otosclerosis, unspecified': 10, 'Urge incontinence of urine': 10, 'Monoclonal gammopathy of uncertain significance': 10, 'Other and unspecified atrioventricular block': 10, 'Benign neoplasm: thymus': 10, 'Mechanical complication of other cardiac and va...': 10, 'Helicobacter pylori (h.pylori) as the cause of ...': 10, 'Polyarthritis, unspecified': 10, 'Osteomyelitis, unspecified': 10, 'Postzoster neuralgia': 10, 'Acute pharyngitis due to other specified organisms': 10, 'Ulcer of oesophagus': 10, 'Effusion of joint: ankle and foot': 10, 'Cerebral palsy': 10, 'Apraxia': 10, 'Spinal stenosis: lumbosacral region': 10, 'Other dystonia': 10, 'Microprolactinoma': 10, 'Cervical spondylosis': 10, 'Premature rupture of membranes, unspecified': 10, 'Resistance to quinolones': 10, 'Other specified noninflammatory disorders of va...': 10, 'Disorders of optic nerve, not elsewhere classified': 10, 'Disorder of pituitary gland, unspecified': 10, 'Dystonia, unspecified': 10, 'Spinal stenosis: multiple sites in spine': 10, 'Liver disease, unspecified': 10, 'Chondrocostal junction syndrome (tietze)': 10, 'Hyperparathyroidism, unspecified': 10, 'Pelvic and perineal pain': 10, 'Staphylococcal infection, unspecified site': 10, 'Polymorphous light eruption': 10, 'Alopecia': 10, 'Disorder of kidney and ureter, unspecified': 10, 'Persistent postural perceptual dizziness': 10, 'Narcolepsy and cataplexy': 10, 'Disorders of both mitral and aortic valves': 10, 'Early-onset cerebellar ataxia': 10, 'Myalgia: multiple sites': 10, 'Hairy-cell leukaemia': 10, 'Abnormal findings in specimens from female geni...': 10, 'Hyperprolactinaemia': 10, 'Other chronic cystitis': 10, 'Beta thalassaemia': 10, 'Chronic gingivitis': 10, 'Mechanical complication of ventricular intracra...': 10, 'Haemorrhoids': 10, 'Other disorders of electrolyte and fluid balanc...': 10, 'Carcinoma in situ: skin of upper limb, includin...': 10, 'Heart failure': 10, 'Acute pancreatitis, unspecified': 9, 'Chronic atrophic gastritis': 9, 'Aortic aneurysm of unspecified site, without me...': 9, 'Osteoarthritis of knee': 9, 'Radiologically isolated syndrome': 9, 'Crohn disease of small intestine': 9, 'Glaucoma suspect': 9, 'Osteoporosis, unspecified: site unspecified': 9, 'Precordial pain': 9, 'Lumbar radiculopathy': 9, 'Other Streptococcus as the cause of diseases cl...': 9, 'Peripheral vascular disease': 9, 'Other specified diseases of jaws': 9, 'Malignant tumour of urinary bladder': 9, 'Plantar fascial fibromatosis': 9, 'Arthritis, unspecified: lower leg': 9, 'Spasmodic torticollis': 9, 'Colostomy and enterostomy malfunction': 9, 'Foot-drop': 9, 'Anal fissure, unspecified': 9, 'Lower respiratory tract infection': 9, 'Chronic ulcer of skin, not elsewhere classified': 9, 'Selective deficiency of immunoglobulin g (igg) ...': 9, 'Complete uterovaginal prolapse': 9, 'Hyperlipidaemia': 9, 'Superficial injury of scalp': 9, 'Type 1 diabetes mellitus: with peripheral circu...': 9, 'Shoulder pain': 9, 'Stiffness of joint, not elsewhere classified: a...': 9, 'Subjective visual disturbances': 9, 'Parastomal hernia without obstruction or gangrene': 9, 'Cerebral arteritis, not elsewhere classified': 9, 'Bullous pemphigoid': 9, 'Herpesviral vesicular dermatitis': 9, 'Background retinopathy and retinal vascular cha...': 9, 'Other viral enteritis': 9, 'Gallstone': 9, 'Unspecified lump in breast': 9, 'Malignant neoplasm: upper lobe, bronchus or lung': 9, 'Breathing-related sleep disorder': 9, 'Disease of pericardium, unspecified': 9, 'Spastic tetraplegia': 9, 'Severe depressive episode without psychotic sym...': 9, 'Open wound of other parts of head': 9, 'Cyst of ovary': 9, 'Periapical abscess without sinus': 9, 'Haematemesis': 9, 'Malignant neoplasm: sigmoid colon': 9, 'Drug-induced adrenocortical insufficiency': 9, 'CKD - chronic kidney disease': 9, 'Gastroduodenitis, unspecified': 9, 'Chest pain': 9, 'Basal cell carcinoma of skin': 9, 'Atopic dermatitis, unspecified': 9, 'Other forms of angina pectoris': 9, 'Talipes equinovarus': 9, 'Cobalamin deficiency': 9, 'Other Staphylococcus as the cause of diseases c...': 9, 'Chronic tonsillitis': 9, 'Bacterial pneumonia, unspecified': 9, 'Pes cavus': 9, 'Tinea unguium': 9, 'Endometriosis of pelvic peritoneum': 9, 'Fracture of upper end of humerus: closed': 9, 'Arthritis, unspecified: ankle and foot': 8, 'Varicella encephalitis': 8, 'Malignant neoplasm: tonsil, unspecified': 8, 'Localized scleroderma (morphea)': 8, 'Personality disorder, unspecified': 8, 'Calculus of kidney with calculus of ureter': 8, 'Mixed urinary incontinence': 8, 'Memory impairment': 8, 'Other disorders of nervous system, not elsewher...': 8, 'Pain in throat': 8, 'Anoxic brain damage, not elsewhere classified': 8, 'Insomnia': 8, 'Otitis media, unspecified': 8, 'Small cell B-cell lymphoma': 8, 'Degeneration of macula and posterior pole': 8, 'Spondylosis': 8, 'Other specified mononeuropathies': 8, 'Mononeuropathy of upper limb, unspecified': 8, 'Obsessive-compulsive disorder': 8, 'Cutaneous abscess, furuncle and carbuncle of bu...': 8, 'Disorders of magnesium metabolism': 8, 'Accidental puncture and laceration during a pro...': 8, 'Cellulitis of finger and toe': 8, 'Viral warts': 8, 'Encephalitis, myelitis and encephalomyelitis in...': 8, 'Calculus of gallbladder with acute cholecystitis': 8, 'Hydrocephalus': 8, 'Other giant cell arteritis': 8, 'Aortic (valve) stenosis': 8, 'Cyst of pancreas': 8, 'Other chronic pancreatitis': 8, 'Attention deficit hyperactivity disorder': 8, 'Inflammatory spondylopathy, unspecified': 8, 'Visual disturbance': 8, 'Chronic kidney disease stage 3': 8, 'Stricture of artery': 8, 'Peripheral nerve disease': 8, 'Neuropathy': 8, 'Traumatic subdural haemorrhage: without open in...': 8, 'Laryngeal spasm': 8, 'Wernicke encephalopathy': 8, 'Malignant neoplasm: frontal lobe': 8, 'Benign neoplasm: descending colon': 8, 'Other spondylosis: thoracic region': 8, 'Pneumothorax, unspecified': 8, 'Pathological fracture, not elsewhere classified...': 8, 'Angiodysplasia of colon': 8, 'Disorders of meninges, not elsewhere classified': 8, 'Ileus, unspecified': 8, 'Viral infection, unspecified': 8, 'Other and unspecified premature depolarization': 8, 'Calculus of gallbladder with other cholecystitis': 8, 'Drug-induced polyneuropathy': 8, 'Genuine stress incontinence': 8, 'Strabismus, unspecified': 8, 'Unspecified protein-energy malnutrition': 8, 'Mechanical complication of gastrointestinal pro...': 8, 'Primary angle-closure glaucoma': 8, 'Malignant neoplasm: malignant neoplasm of skin,...': 8, 'Unspecified kidney failure': 8, 'Other specified retinal disorders': 8, 'Other postprocedural disorders of digestive sys...': 8, 'Bulimia nervosa': 8, 'Diabetes mellitus in pregnancy: pre-existing ty...': 8, 'White matter changes': 8, 'Congenital myopathies': 8, 'Acute renal failure syndrome': 8, 'Other superficial injuries of abdomen, lower ba...': 8, 'Hydrocele, unspecified': 8, 'Dysmenorrhoea, unspecified': 8, 'Other specified epidermal thickening': 8, 'Bilateral sensory hearing loss': 8, 'Other complications of internal orthopaedic pro...': 8, 'Crohn disease of large intestine': 8, 'Muscle weakness': 8, 'Labyrinthitis': 8, 'Impingement syndrome of shoulder': 8, 'Malignant tumour of colon': 8, 'Accessory kidney': 8, 'Other and unspecified gastroenteritis and colit...': 8, 'Sequelae of other accidents': 7, 'Sequelae of injury of spinal cord': 7, 'Low lying placenta': 7, 'Tremor': 7, 'Pain in thoracic spine': 7, 'Glomerular disorders in diabetes mellitus': 7, 'Chronic maxillary sinusitis': 7, 'Disease of oesophagus, unspecified': 7, 'Hepatomegaly with splenomegaly, not elsewhere c...': 7, 'Constipation - functional': 7, 'Trifascicular block': 7, 'Secondary thrombocytopenia': 7, 'Rosacea': 7, 'Schizophrenia': 7, 'Normal pressure hydrocephalus': 7, 'Disorder of central nervous system, unspecified': 7, 'Secondary malignant neoplasm of lung': 7, 'Dry mouth, unspecified': 7, 'Polycystic kidney, unspecified': 7, 'Scrotal varices': 7, 'Lymphoedema': 7, 'Endocarditis, valve unspecified': 7, 'Stroke, not specified as haemorrhage or infarction': 7, 'Acute transverse myelitis': 7, 'Lyme disease': 7, 'Other somatoform disorders': 7, 'Mechanical complication of internal fixation de...': 7, 'Achalasia of oesophagus': 7, 'Vascular dementia, unspecified': 7, 'Thoracic aortic aneurysm, without mention of ru...': 7, 'Spinal stenosis of lumbar region': 7, 'Lichen planus, unspecified': 7, 'Melaena': 7, 'Intestinal adhesions (bands) with obstruction': 7, 'Recurrent dislocation and subluxation of joint:...': 7, 'Alcoholic liver disease, unspecified': 7, 'Acquired keratosis (keratoderma) palmaris et pl...': 7, 'First degree perineal laceration during delivery': 7, 'Dental caries': 7, 'Pneumonia': 7, 'Hiccough': 7, 'Thyroid eye disease': 7, 'Chronic kidney disease, stage 4': 7, 'Other disorders of lipoprotein metabolism': 7, 'Traumatic subarachnoid haemorrhage: without ope...': 7, 'Vertigo': 7, 'Pyothorax without fistula': 7, 'Hospital acquired pneumonia': 7, 'Intramural leiomyoma of uterus': 7, 'Serous retinal detachment': 7, 'Other complications of procedures, not elsewher...': 7, 'Secondary malignant neoplasm of other specified...': 7, 'Asperger syndrome': 7, 'Pituitary adenoma': 7, 'Malignant neoplasm: overlapping lesion of colon': 7, 'Other pruritus': 7, 'Vasovagal syncope': 7, 'Other specified disorders of gingiva and edentu...': 7, 'Other superficial injuries of hip and thigh': 7, 'Headache disorder': 7, ""Bell's palsy"": 7, 'Portal hypertension': 7, 'Abnormal findings in cerebrospinal fluid: abnor...': 7, 'Spondylolysis: cervical region': 7, 'Abnormal findings in specimens from respiratory...': 7, 'Left sided colitis': 7, 'Leucodystrophy': 7, 'Sensorineural hearing loss, unilateral with unr...': 7, 'Social phobias': 7, 'Intracranial space-occupying lesion on diagnost...': 7, 'Non-alcoholic fatty liver': 7, 'Nonspecific low blood-pressure reading': 7, 'Spondylosis, unspecified: cervical region': 7, 'Compression fracture of vertebral column': 7, 'Developmental academic disorder': 7, 'Osteoarthritis of hip': 7, 'Thyroid nodule': 7, 'Hepatic failure, unspecified': 7, 'Other specified types of non-Hodgkin lymphoma': 7, 'Other diseases of larynx': 7, 'Nodule of lung': 7, 'Latent tuberculosis': 7, 'Visual impairment': 7, 'Type 1 diabetes mellitus: with renal complications': 7, 'Prolonged second stage (of labour)': 7, 'Acoustic neuroma': 7, 'Arthritis, unspecified: multiple sites': 7, 'Haemorrhage in early pregnancy, unspecified': 7, 'Ulcerative (chronic) pancolitis': 7, 'Thyroiditis, unspecified': 7, 'Necrobiosis lipoidica, not elsewhere classified': 7, 'Endometrial glandular hyperplasia': 7, 'Syncope': 7, 'Chiari malformation type I': 6, 'Adrenal insufficiency': 6, 'Delirium not superimposed on dementia, so descr...': 6, 'Torticollis': 6, 'Osteomyelitis': 6, 'Panic attack': 6, 'Intervertebral disc prolapse': 6, 'Vertigo of central origin': 6, 'Cutaneous abscess, furuncle and carbuncle of trunk': 6, 'PR - Bleeding per rectum': 6, 'Spastic paraparesis': 6, 'Other complications following infusion, transfu...': 6, 'Other acne': 6, 'Other cystitis': 6, 'Other reconstructive surgery as the cause of ab...': 6, 'Anomalies of pupillary function': 6, 'Chronic tubotympanic suppurative otitis media': 6, 'Neoplasm of brain': 6, 'Rheumatoid arthritis, unspecified: multiple sites': 6, 'Monoplegia of lower limb': 6, 'Malignant neoplasm of kidney, except renal pelvis': 6, 'Otalgia': 6, 'Migraine variant with headache': 6, 'Retrobulbar optic neuritis of right eye': 6, 'Other specified complications of cardiac and va...': 6, 'Female stress incontinence': 6, 'Other complications of internal prosthetic devi...': 6, 'Persistent atrial fibrillation': 6, 'Asymmetrical sensorineural hearing loss': 6, 'Inflammatory polyarthropathy': 6, 'Neoplasm of uncertain or unknown behaviour: bla...': 6, 'Low blood pressure': 6, 'Spinal cord disease': 6, 'Other specified disorders of pigmentation': 6, ""Raynaud's phenomenon"": 6, 'Cluster headache': 6, 'Prediabetes': 6, 'Pain in joint: ankle and foot': 6, 'Otitis externa, unspecified': 6, 'Functionless pituitary adenoma': 6, 'Adrenal adenoma': 6, 'Subclinical hypothyroidism': 6, 'Anorexia nervosa': 6, 'Other osteonecrosis': 6, 'Postural orthostatic tachycardia syndrome': 6, 'Acute myocardial infarction, unspecified': 6, 'Pre-diabetes': 6, 'Other hyperparathyroidism': 6, 'Muscle pain': 6, 'Neurohypophyseal diabetes insipidus': 6, ""Gilbert's syndrome"": 6, 'Nutritional deficiency, unspecified': 6, 'Hashimoto thyroiditis': 6, 'Stable angina': 6, 'Folic acid deficiency': 6, 'Rectocele': 6, 'Chronic cholecystitis': 6, 'Other epilepsy': 6, 'Joint disorder, unspecified: lower leg': 6, ""Addison's disease"": 6, 'Community acquired pneumonia': 6, 'Malignant tumour of ovary': 6, ""Alzheimer's disease"": 6, 'Other chronic osteomyelitis: lower leg': 6, 'Dysarthria': 6, 'Other spondylosis with radiculopathy: lumbar re...': 6, 'Other specified anxiety disorders': 6, 'Bursopathy, unspecified: upper arm': 6, 'Mechanical complication of other prosthetic dev...': 6, 'Other nail disorders': 6, 'Pain in limb': 6, 'Mild cervical dysplasia': 6, 'Dementia in Alzheimer disease with late onset': 6, 'Infection and inflammatory reaction due to inte...': 6, 'Sprain and strain of ankle': 6, 'Benign lipomatous neoplasm of intra-abdominal o...': 6, 'Portal vein thrombosis': 6, 'Toxic gastroenteritis and colitis': 6, 'Hereditary factor VIII deficiency': 6, 'Inflammatory conditions of jaws': 6, 'Spastic hemiplegia': 6, 'Compression of brain': 6, 'Contracture of joint: multiple sites': 6, 'Open wound of thigh': 6, 'Cholangitis': 6, 'Open wound of toe(s) without damage to nail': 6, 'Secondary malignant neoplasm of pleura': 6, 'Peptic ulcer, site unspecified: unspecified as ...': 6, 'Paralytic ileus': 6, 'Idiopathic aseptic necrosis of bone': 6, 'Alzheimer disease with late onset': 6, 'Other acute osteomyelitis: ankle and foot': 6, 'Bilateral inguinal hernia, without obstruction ...': 6, 'Melanocytic naevi of scalp and neck': 6, 'Benign neoplasm: rectum': 6, 'Superficial injury of lower leg, unspecified': 6, 'Achilles tendinitis': 6, 'Postprocedural hypoparathyroidism': 6, 'Disorders of iron metabolism': 6, 'Hypertrophy of breast': 6, 'Fracture of upper end of tibia: closed': 6, 'Endocrine, nutritional and metabolic diseases c...': 6, 'Dysthyroid exophthalmos': 6, 'Unspecified infection of urinary tract in pregn...': 6, 'Maternal care for breech presentation': 6}" +5,CONDITION_OCCURRENCE.parquet,condition_status_concept_id,"{32909: 62574, 32903: 19564, 0: 13014, 32892: 2872, 32906: 140}" 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'Sublingual': 29, 'Left Ear': 26, 'Intra-articular': 21, 'PEJ/Jejunostomy': 20, 'toothpaste': 18, 'Right Eye': 17, 'Right Ear': 10, 'Nasal': 8, 'Other': 7, 'CVVHDF': 6, 'Route Not Applicable': 6}" +11,DRUG_EXPOSURE.parquet,drug_source_concept_id,"{21236850: 21814, 36817005: 8323, 36815880: 8212, 21311171: 5235, 21218082: 4587, 21274139: 4574, 36815547: 4430, 21198605: 4115, 36816962: 3610, 40692547: 3476, 36122388: 3448, 21199983: 3222, 36816017: 3204, 21292647: 2919, 21237166: 2823, 21237144: 2757, 21199743: 2737, 21291496: 2676, 21199846: 2558, 36816817: 2220, 21274381: 2172, 36817124: 2107, 36120595: 2080, 36817170: 2026, 21255352: 1718, 36815236: 1641, 21293040: 1619, 21273056: 1573, 36816961: 1565, 36079656: 1525, 36123598: 1438, 21311486: 1429, 21311235: 1386, 21237139: 1385, 36960998: 1384, 21236812: 1360, 36072430: 1302, 21199985: 1237, 36816442: 1184, 21291238: 1180, 36817446: 1170, 36122774: 1170, 36122469: 1156, 21255277: 1153, 36122785: 1094, 21311711: 1081, 36816902: 1060, 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+12,FACT_RELATIONSHIP.parquet,relationship_concept_id,"{32668: 2009328, 32669: 2009328, 581436: 11843, 581437: 11843, 46233685: 26, 44818868: 26}" +13,MEASUREMENT.parquet,measurement_concept_id,"{3007164: 7046, 3005719: 7019, 3028026: 7018, 3007368: 1015, 3966310: 774, 3010503: 591, 3016228: 586, 3965715: 301, 3048484: 6}" +14,MEASUREMENT.parquet,measurement_type_concept_id,{32817: 24356} +15,MEASUREMENT.parquet,operator_concept_id,"{0: 24275, 4171756: 69, 4172704: 12}" +16,MEASUREMENT.parquet,measurement_source_concept_id,{0: 24356} +17,MEASUREMENT.parquet,value_as_concept_id,{0: 24356} +18,OBSERVATION.parquet,observation_source_concept_id,{0: 25273} +19,OBSERVATION.parquet,qualifier_concept_id,{0: 25273} +20,OBSERVATION.parquet,observation_concept_id,"{4275495: 14857, 35812882: 10416}" +21,OBSERVATION.parquet,observation_type_concept_id,{32817: 25273} +22,OBSERVATION_PERIOD.parquet,period_type_concept_id,{32817: 3162} +23,PERSON.parquet,person_source_value,{} +24,PERSON.parquet,ethnicity_concept_id,{0: 10581} +25,PERSON.parquet,race_concept_id,"{46286810: 4900, 37394011: 1700, 46285826: 1125, 0: 1014, 46285839: 408, 46285831: 296, 46285835: 222, 46285836: 188, 46286811: 150, 46285824: 126, 46285830: 107, 46285837: 97, 46285832: 71, 46285833: 61, 46285827: 37, 46285828: 29, 46285834: 26, 46285829: 24}" +26,PERSON.parquet,gender_concept_id,"{8532: 7108, 8507: 3471}" +27,PERSON.parquet,gender_source_value,"{'Female': 7108, 'Male': 3471}" +28,PERSON.parquet,gender_source_concept_id,{0: 10581} +29,PERSON.parquet,race_source_concept_id,{0: 10581} +30,PERSON.parquet,ethnicity_source_concept_id,{0: 10581} +31,PERSON.parquet,race_source_value,"{'White British': 4900, 'Other White Background': 1125, 'Not Stated / Unknown': 1038, '*Unspecified': 1014, 'Not Yet Asked': 553, 'Other Ethnic Group': 408, 'Asian Indian': 296, 'Other Asian Background': 222, 'Black Caribbean': 188, 'Black African': 150, 'White Irish': 126, 'Refused to Give': 109, 'Other Mixed Background': 107, 'Other Black Background': 94, 'Asian Pakistani': 71, 'Asian Bangladeshi': 61, 'Mixed White and Black Caribbean': 37, 'Mixed White and Black African': 29, 'Chinese': 26, 'Mixed White and Asian': 24}" +32,PROCEDURE_OCCURRENCE.parquet,procedure_source_concept_id,{0: 24605} +33,PROCEDURE_OCCURRENCE.parquet,modifier_concept_id,{0: 24605} +34,PROCEDURE_OCCURRENCE.parquet,procedure_type_concept_id,{32817: 24605} +35,PROCEDURE_OCCURRENCE.parquet,procedure_concept_id,"{4082979: 12488, 40493263: 4456, 4082839: 2180, 4197203: 1299, 4329770: 985, 40487864: 915, 4082840: 851, 4082841: 532, 4082988: 223, 4245419: 188, 4167390: 133, 4335804: 85, 4202579: 75, 4238572: 58, 40481420: 33, 4171206: 29, 4335231: 17, 40489395: 17, 44809220: 13, 4328974: 13, 4084305: 8}" +36,SPECIMEN.parquet,specimen_concept_id,"{4001345: 239672, 4001225: 180459, 4122280: 27497, 4046280: 12401, 40482924: 6646, 0: 5807, 40482922: 5030, 4124259: 3894, 4047496: 3249, 4045667: 2920, 4045757: 2748, 4122251: 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Irish +12,54,,0,46286810,8507,Female,0,0,0,Other White Background +30,55,,0,46286810,8532,Female,0,0,0,White British +61,56,,0,46285836,8507,Female,0,0,0,*Unspecified +50,57,,0,37394011,8532,Female,0,0,0,*Unspecified +24,58,,0,46285839,8532,Female,0,0,0,White British +86,59,,0,46286810,8507,Female,0,0,0,*Unspecified +54,60,,0,46285839,8532,Female,0,0,0,White British +33,61,,0,46285826,8532,Female,0,0,0,Other White Background +95,62,,0,46286810,8507,Male,0,0,0,White British +52,63,,0,46286810,8507,Female,0,0,0,Other White Background +59,64,,0,46285826,8532,Female,0,0,0,Not Yet Asked +66,65,,0,46286810,8532,Female,0,0,0,White British +17,66,,0,46286811,8532,Female,0,0,0,White British +43,67,,0,37394011,8507,Female,0,0,0,*Unspecified +53,68,,0,37394011,8532,Female,0,0,0,Other White Background +34,69,,0,46286810,8507,Female,0,0,0,White British +2,70,,0,46286810,8507,Female,0,0,0,White Irish +69,71,,0,37394011,8507,Female,0,0,0,White British +90,72,,0,0,8532,Female,0,0,0,White British 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Unknown +43,93,,0,46286810,8507,Male,0,0,0,White British +6,94,,0,46286810,8532,Female,0,0,0,White British +65,95,,0,46285832,8532,Male,0,0,0,Other White Background +72,96,,0,46285826,8532,Male,0,0,0,Other White Background +75,97,,0,0,8532,Female,0,0,0,*Unspecified +58,98,,0,46286810,8532,Female,0,0,0,White British +45,99,,0,37394011,8532,Male,0,0,0,Not Stated / Unknown diff --git a/_projects/MS_PINPOINT/Data/PROCEDURE_OCCURRENCE.csv b/_projects/MS_PINPOINT/Data/PROCEDURE_OCCURRENCE.csv new file mode 100644 index 0000000..3f717e7 --- /dev/null +++ b/_projects/MS_PINPOINT/Data/PROCEDURE_OCCURRENCE.csv @@ -0,0 +1,101 @@ +pinpoint_person_id,procedure_occurrence_id,procedure_source_concept_id,modifier_concept_id,procedure_type_concept_id,procedure_concept_id +22,0,0,0,32817,4197203 +64,1,0,0,32817,4082979 +92,2,0,0,32817,4082979 +77,3,0,0,32817,4082979 +2,4,0,0,32817,40493263 +37,5,0,0,32817,4197203 +5,6,0,0,32817,4082979 +6,7,0,0,32817,4082988 +50,8,0,0,32817,4197203 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index 0000000..938b336 --- /dev/null +++ b/_projects/MS_PINPOINT/data.html @@ -0,0 +1,19 @@ + +
Data Downloads
+
+ + diff --git a/_projects/MS_PINPOINT/data.md b/_projects/MS_PINPOINT/data.md new file mode 100644 index 0000000..baf4ab8 --- /dev/null +++ b/_projects/MS_PINPOINT/data.md @@ -0,0 +1,4 @@ +## Data + +Data should be available to download as csv files on this page, but once the UCL RDR approves the release, it will also be accessible via the widget here. + diff --git a/_projects/MS_PINPOINT/index.md b/_projects/MS_PINPOINT/index.md new file mode 100644 index 0000000..16ebb04 --- /dev/null +++ b/_projects/MS_PINPOINT/index.md @@ -0,0 +1,20 @@ +--- +layout: project +title: MS-PINPOINT +status: ongoing +authors: + - Benjamin Ford + - Arman Eshaghi + - Johnathan Stutters +tabs: +- { + name: descriptive_data, + source: data.html, + label: Dataset Overview + } +- { + name: Accompanying_documentation, + source: info.md, + label: Docs + } +--- \ No newline at end of file diff --git a/_projects/MS_PINPOINT/info.md b/_projects/MS_PINPOINT/info.md new file mode 100644 index 0000000..419c9e7 --- /dev/null +++ b/_projects/MS_PINPOINT/info.md @@ -0,0 +1,14 @@ +## About MS-PINPOINT + +MS-PINPOINT is a multi-centre project developing healthcare tools to aid in the treatment of patients with Multiple Sclerosis. Based at UCL, we develop tools for segmenting MS-typical lesions in brain and spinal cord MRI, as well as tools that use electronic health record data to model how individual patients will respond to the range of treatment options available. + +To support these endeavours we use MRI and EHR data obtained as part of routine care. In this datacard we provide an overview of the structured data that we store, as free-text data is highly identifiable and cannot be shared in a way that guarantees patient privacy while retaining semblance of the original data. + +More info about MS-PINPOINT can be found at: https://www.ms-pinpoint.com/ +## Data Format + +We present 3 types of data in this datacard. Data Description describes the categories of patient data we store in parquet files exported directly from Epic EHR service. Ranges as well as means and standard deviations are supplied for the fields in which this applies. We also report the frequencies of entries for certain fields in Distribution of Values. This datasheet shows the frequency with which different OMOP concepts are observed, and can also inform about the demographics of our dataset. In line with privacy guidelines, entries which occur 5 times or less have been removed. We also supply purely representative examples of the parquet files we export, in csv form. These are only representative as cannot release certain fields such as measurement values, or model the interrelationships between different fields due to the risk of patient data exposure. + +## Purpose of this Datacard + +We hope that this datacard aids us in keeping our research transparent to both patients and members of the research community. This datacard gives a brief insight into the scope of our dataset and we hope provides an avenue for collaboration with researchers whose questions can be addressed by our dataset. \ No newline at end of file diff --git a/_projects/index.md b/_projects/index.md new file mode 100644 index 0000000..e69de29 From fb438f413179fb13641a96e943dd99a4dc8611d4 Mon Sep 17 00:00:00 2001 From: Benjamin Ford <61624212+FordUCL@users.noreply.github.com> Date: Mon, 25 Nov 2024 11:40:13 +0000 Subject: [PATCH 2/5] Update _projects/MS_PINPOINT/index.md Co-authored-by: Stef Piatek --- _projects/MS_PINPOINT/index.md | 15 ++++++++++++++- 1 file changed, 14 insertions(+), 1 deletion(-) diff --git a/_projects/MS_PINPOINT/index.md b/_projects/MS_PINPOINT/index.md index 16ebb04..f54e1fe 100644 --- a/_projects/MS_PINPOINT/index.md +++ b/_projects/MS_PINPOINT/index.md @@ -17,4 +17,17 @@ tabs: source: info.md, label: Docs } ---- \ No newline at end of file +--- + +MS-PINPOINT is a multi-centre project developing healthcare tools to aid in the treatment of patients with Multiple Sclerosis. Based at UCL, we develop tools for segmenting MS-typical lesions in brain and spinal cord MRI, as well as tools that use electronic health record data to model how individual patients will respond to the range of treatment options available. + +To support these endeavours we use MRI and EHR data obtained as part of routine care. In this datacard we provide an overview of the structured data that we store, as free-text data is highly identifiable and cannot be shared in a way that guarantees patient privacy while retaining semblance of the original data. + +More info about MS-PINPOINT can be found at: https://www.ms-pinpoint.com/ +## Data Format + +We present 3 types of data in this datacard. Data Description describes the categories of patient data we store in parquet files exported directly from Epic EHR service. Ranges as well as means and standard deviations are supplied for the fields in which this applies. We also report the frequencies of entries for certain fields in Distribution of Values. This datasheet shows the frequency with which different OMOP concepts are observed, and can also inform about the demographics of our dataset. In line with privacy guidelines, entries which occur 5 times or less have been removed. We also supply purely representative examples of the parquet files we export, in csv form. These are only representative as cannot release certain fields such as measurement values, or model the interrelationships between different fields due to the risk of patient data exposure. + +## Purpose of this Datacard + +We hope that this datacard aids us in keeping our research transparent to both patients and members of the research community. This datacard gives a brief insight into the scope of our dataset and we hope provides an avenue for collaboration with researchers whose questions can be addressed by our dataset \ No newline at end of file From 424a775453a7f7d6459feb42201c2ca037d1130c Mon Sep 17 00:00:00 2001 From: MacBook M1 Pro 16 Date: Mon, 25 Nov 2024 12:02:27 +0000 Subject: [PATCH 3/5] Addressing merge comments: distribution file renamed, info.md -> index.md, info.md removed, generation description added to data.md --- ...nOfValues copy.csv => DistributionOfValues.csv} | 0 _projects/MS_PINPOINT/data.md | 3 +++ _projects/MS_PINPOINT/index.md | 5 ----- _projects/MS_PINPOINT/info.md | 14 -------------- _projects/index.md | 0 5 files changed, 3 insertions(+), 19 deletions(-) rename _projects/MS_PINPOINT/Data/{DistributionOfValues copy.csv => DistributionOfValues.csv} (100%) delete mode 100644 _projects/MS_PINPOINT/info.md delete mode 100644 _projects/index.md diff --git a/_projects/MS_PINPOINT/Data/DistributionOfValues copy.csv b/_projects/MS_PINPOINT/Data/DistributionOfValues.csv similarity index 100% rename from _projects/MS_PINPOINT/Data/DistributionOfValues copy.csv rename to _projects/MS_PINPOINT/Data/DistributionOfValues.csv diff --git a/_projects/MS_PINPOINT/data.md b/_projects/MS_PINPOINT/data.md index baf4ab8..bd24c2d 100644 --- a/_projects/MS_PINPOINT/data.md +++ b/_projects/MS_PINPOINT/data.md @@ -2,3 +2,6 @@ Data should be available to download as csv files on this page, but once the UCL RDR approves the release, it will also be accessible via the widget here. +## Data Generation + +Representative data files have been generated column by column via random draw from the distribution of entries in the real data. Columns were selected manually for inclusion based on which could be modelled well. Refer to data_description.csv for a full list of fields used in the MS-PINPOINT project. \ No newline at end of file diff --git a/_projects/MS_PINPOINT/index.md b/_projects/MS_PINPOINT/index.md index f54e1fe..9e5217d 100644 --- a/_projects/MS_PINPOINT/index.md +++ b/_projects/MS_PINPOINT/index.md @@ -12,11 +12,6 @@ tabs: source: data.html, label: Dataset Overview } -- { - name: Accompanying_documentation, - source: info.md, - label: Docs - } --- MS-PINPOINT is a multi-centre project developing healthcare tools to aid in the treatment of patients with Multiple Sclerosis. Based at UCL, we develop tools for segmenting MS-typical lesions in brain and spinal cord MRI, as well as tools that use electronic health record data to model how individual patients will respond to the range of treatment options available. diff --git a/_projects/MS_PINPOINT/info.md b/_projects/MS_PINPOINT/info.md deleted file mode 100644 index 419c9e7..0000000 --- a/_projects/MS_PINPOINT/info.md +++ /dev/null @@ -1,14 +0,0 @@ -## About MS-PINPOINT - -MS-PINPOINT is a multi-centre project developing healthcare tools to aid in the treatment of patients with Multiple Sclerosis. Based at UCL, we develop tools for segmenting MS-typical lesions in brain and spinal cord MRI, as well as tools that use electronic health record data to model how individual patients will respond to the range of treatment options available. - -To support these endeavours we use MRI and EHR data obtained as part of routine care. In this datacard we provide an overview of the structured data that we store, as free-text data is highly identifiable and cannot be shared in a way that guarantees patient privacy while retaining semblance of the original data. - -More info about MS-PINPOINT can be found at: https://www.ms-pinpoint.com/ -## Data Format - -We present 3 types of data in this datacard. Data Description describes the categories of patient data we store in parquet files exported directly from Epic EHR service. Ranges as well as means and standard deviations are supplied for the fields in which this applies. We also report the frequencies of entries for certain fields in Distribution of Values. This datasheet shows the frequency with which different OMOP concepts are observed, and can also inform about the demographics of our dataset. In line with privacy guidelines, entries which occur 5 times or less have been removed. We also supply purely representative examples of the parquet files we export, in csv form. These are only representative as cannot release certain fields such as measurement values, or model the interrelationships between different fields due to the risk of patient data exposure. - -## Purpose of this Datacard - -We hope that this datacard aids us in keeping our research transparent to both patients and members of the research community. This datacard gives a brief insight into the scope of our dataset and we hope provides an avenue for collaboration with researchers whose questions can be addressed by our dataset. \ No newline at end of file diff --git a/_projects/index.md b/_projects/index.md deleted file mode 100644 index e69de29..0000000 From 43bbd4f3f3df111b052d57da9942bedb542d2fa5 Mon Sep 17 00:00:00 2001 From: MacBook M1 Pro 16 Date: Mon, 25 Nov 2024 15:00:38 +0000 Subject: [PATCH 4/5] Moved data disclaimer from data.md to data.html, removed data.md --- _projects/MS_PINPOINT/data.html | 1 + _projects/MS_PINPOINT/data.md | 7 ------- 2 files changed, 1 insertion(+), 7 deletions(-) delete mode 100644 _projects/MS_PINPOINT/data.md diff --git a/_projects/MS_PINPOINT/data.html b/_projects/MS_PINPOINT/data.html index 938b336..307adc8 100644 --- a/_projects/MS_PINPOINT/data.html +++ b/_projects/MS_PINPOINT/data.html @@ -1,5 +1,6 @@
Data Downloads
+

Representative data files have been generated column by column via random draw from the distribution of entries in the real data. Columns were selected manually for inclusion based on which could be modelled well. Refer to data_description.csv for a full list of fields used in the MS-PINPOINT project.


  • Data Description
    • diff --git a/_projects/MS_PINPOINT/data.md b/_projects/MS_PINPOINT/data.md deleted file mode 100644 index bd24c2d..0000000 --- a/_projects/MS_PINPOINT/data.md +++ /dev/null @@ -1,7 +0,0 @@ -## Data - -Data should be available to download as csv files on this page, but once the UCL RDR approves the release, it will also be accessible via the widget here. - -## Data Generation - -Representative data files have been generated column by column via random draw from the distribution of entries in the real data. Columns were selected manually for inclusion based on which could be modelled well. Refer to data_description.csv for a full list of fields used in the MS-PINPOINT project. \ No newline at end of file From a17e1a2d00c24e2989bc139158f889e422d6821e Mon Sep 17 00:00:00 2001 From: MacBook M1 Pro 16 Date: Mon, 25 Nov 2024 15:14:02 +0000 Subject: [PATCH 5/5] Added type and tags to index.md --- _projects/MS_PINPOINT/index.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/_projects/MS_PINPOINT/index.md b/_projects/MS_PINPOINT/index.md index 9e5217d..b7e2cef 100644 --- a/_projects/MS_PINPOINT/index.md +++ b/_projects/MS_PINPOINT/index.md @@ -2,6 +2,7 @@ layout: project title: MS-PINPOINT status: ongoing +tags: Multiple Sclerosis, UCL, Neuroinflammation authors: - Benjamin Ford - Arman Eshaghi @@ -10,6 +11,7 @@ tabs: - { name: descriptive_data, source: data.html, + type: html, label: Dataset Overview } ---