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PIXL Export API

The Export API provides HTTP endpoints to control the copying of EHR data from the OMOP extract to its destination (eg. FTPS). It also uploads DICOM data to its destination after it has been processed by the Imaging API and orthanc(s). It no longer accepts messages from rabbitmq.

Installation

First, make sure you have postgresql installed on your system.

On macOS:

brew install postgresql

On Ubuntu:

sudo apt install postgresql

On Windows, follow these instructions.

Then install PIXL with:

uv sync

Test

pytest

Usage

Usage should be from the CLI driver, which calls the HTTP endpoints.

Notes

  • The height/weight/GCS value is extracted only within a 24 h time window