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Mmmm I'd keep dplyr. It's very popular (they will find dplyr code everywhere). And powerful. And we use it a lot for the GIS module (sf is closely tied to dplyr). At least a brief intro to the pipe (%>%) and a few common verbs (filter, select, group_by and summarise...)
R pkgs would be nice, but I think many more people will need (or would benefit) from tools like Rmarkdown or GitHub before building their own pkg. But I would definitely teach how to write functions. That is critical for good code, and main step to be able to build pkgs later
I am thinking on droping dplyr and add taxize to day 1.
Multivariate analysis can also use FD metrics... but this is too much.
R packages?
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