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Rewrite the regex rules to make sure that a sample will not be ran by the pipeline if a sample contains whitespace in its name:
Valid filename: Example_data.fastq.gz
Example_data.fastq.gz
Invalid filename: Example_data .fastq.gz (note the space between samplename and file extensions)
Example_data .fastq.gz
Change the regex to something like the following for nanopore data: ([ ]*)([\S]*)\.f(ast)?q(\.gz)?
([ ]*)([\S]*)\.f(ast)?q(\.gz)?
Using these groups allows us to not include a sample in the samplesheet if it has a space in its name
The text was updated successfully, but these errors were encountered:
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Rewrite the regex rules to make sure that a sample will not be ran by the pipeline if a sample contains whitespace in its name:
Valid filename:
Example_data.fastq.gz
Invalid filename:
Example_data .fastq.gz
(note the space between samplename and file extensions)Change the regex to something like the following for nanopore data:
([ ]*)([\S]*)\.f(ast)?q(\.gz)?
Using these groups allows us to not include a sample in the samplesheet if it has a space in its name
The text was updated successfully, but these errors were encountered: