diff --git a/tools/biotransformer/biotransformer.xml b/tools/biotransformer/biotransformer.xml
index 057442fb4..97556f7f8 100644
--- a/tools/biotransformer/biotransformer.xml
+++ b/tools/biotransformer/biotransformer.xml
@@ -1,4 +1,4 @@
-<tool id="biotransformer" name="BioTransformer" version="@TOOL_VERSION@+galaxy2" profile="21.09">
+<tool id="biotransformer" name="BioTransformer" version="@TOOL_VERSION@+galaxy3" profile="21.09">
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -59,19 +59,19 @@
             <param name="input_file" value="smiles.csv"/>
             <output name="output_file">
                 <assert_contents>
-                    <has_size value="8600" delta="300"/>
+                    <has_size value="9356" delta="300"/>
                     <has_n_lines n="225" delta="10"/>
                 </assert_contents>
             </output>
             <output name="output_file2">
                 <assert_contents>
-                    <has_size value="8600" delta="300"/>
+                    <has_size value="9356" delta="300"/>
                     <has_n_lines n="225" delta="10"/>
                 </assert_contents>
             </output>
             <output name="output_file3">
                 <assert_contents>
-                    <has_size value="7400" delta="300"/>
+                    <has_size value="8135" delta="300"/>
                     <has_n_lines n="186" delta="10"/>
                 </assert_contents>
             </output>