From 64754ac5cb90c39b478dfdbe03c1ee747b7251da Mon Sep 17 00:00:00 2001 From: oliviaAB Date: Thu, 28 Mar 2024 15:28:47 +1300 Subject: [PATCH] Updating GitHub links --- DESCRIPTION | 4 ++-- README.Rmd | 6 +++--- README.md | 11 ++++++----- _pkgdown.yml | 8 ++++---- 4 files changed, 15 insertions(+), 14 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 475d63a..d50830c 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -12,8 +12,8 @@ Description: A package to facilitate the construction of reproducible pipelines construction of input objects for several multi-omics integration packages (such as mixOmics or MOFA), as well as visualisation of the results and comparison of different integration tools. -URL: https://github.com/PlantandFoodResearch/moiraine, https://bookish-disco-p832pyq.pages.github.io/ -BugReports: https://github.com/PlantandFoodResearch/moiraine/issues +URL: https://github.com/Plant-Food-Research-Open/moiraine, https://plant-food-research-open.github.io/moiraine/ +BugReports: https://github.com/Plant-Food-Research-Open/moiraine/issues License: MIT + file LICENSE Encoding: UTF-8 Roxygen: list(markdown = TRUE) diff --git a/README.Rmd b/README.Rmd index 7866d9c..e8c7d9b 100644 --- a/README.Rmd +++ b/README.Rmd @@ -43,7 +43,7 @@ The workflow for a typical multi-omics integration analysis handled with `moirai * Comparison of the integration results obtained by different methods or pre-processing approaches. -An overview of the capabilities of the package is available [here](https://solid-lamp-kq546rq.pages.github.io/overview.html). +An overview of the capabilities of the package is available [here](https://plant-food-research-open.github.io/moiraine-manual/overview.html). ## Installation @@ -51,7 +51,7 @@ You can install the development version of moiraine from [GitHub](https://github ``` r # install.packages("devtools") -devtools::install_github("PlantandFoodResearch/moiraine") +devtools::install_github("Plant-Food-Research-Open/moiraine") ``` ## Example @@ -66,6 +66,6 @@ library(moiraine) create_moiraine_pipeline() ``` -The [user manual](https://solid-lamp-kq546rq.pages.github.io/) provides an in-depth walk-through of a multi-omics integration analysis with the package. +The [user manual](https://plant-food-research-open.github.io/moiraine-manual/) provides an in-depth walk-through of a multi-omics integration analysis with the package. Before using `moiraine`, we encourage you to get familiar with the `targets` package; the [`targets` manual](https://books.ropensci.org/targets/) is a great place to start. diff --git a/README.md b/README.md index 7a68041..fb2ef96 100644 --- a/README.md +++ b/README.md @@ -53,7 +53,7 @@ The workflow for a typical multi-omics integration analysis handled with pre-processing approaches. An overview of the capabilities of the package is available -[here](https://solid-lamp-kq546rq.pages.github.io/overview.html). +[here](https://plant-food-research-open.github.io/moiraine-manual/overview.html). ## Installation @@ -62,7 +62,7 @@ You can install the development version of moiraine from ``` r # install.packages("devtools") -devtools::install_github("PlantandFoodResearch/moiraine") +devtools::install_github("Plant-Food-Research-Open/moiraine") ``` ## Example @@ -76,9 +76,10 @@ library(moiraine) create_moiraine_pipeline() ``` -The [user manual](https://solid-lamp-kq546rq.pages.github.io/) provides -an in-depth walk-through of a multi-omics integration analysis with the -package. +The [user +manual](https://plant-food-research-open.github.io/moiraine-manual/) +provides an in-depth walk-through of a multi-omics integration analysis +with the package. Before using `moiraine`, we encourage you to get familiar with the `targets` package; the [`targets` diff --git a/_pkgdown.yml b/_pkgdown.yml index 3a75dd6..8c29da9 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -1,4 +1,4 @@ -url: https://bookish-disco-p832pyq.pages.github.io/ +url: https://plant-food-research-open.github.io/moiraine/ template: bootstrap: 5 bootswatch: zephyr @@ -12,16 +12,16 @@ navbar: type: default left: - text: Overview - href: https://solid-lamp-kq546rq.pages.github.io/overview.html + href: https://plant-food-research-open.github.io/moiraine-manual/overview.html - text: Reference href: reference/index.html - text: Manual - href: https://solid-lamp-kq546rq.pages.github.io/ + href: https://plant-food-research-open.github.io/moiraine-manual/ - text: News href: news/index.html right: - icon: fa-github fa-lg - href: https://github.com/PlantandFoodResearch/moiraine + href: https://github.com/Plant-Food-Research-Open/moiraine reference: - title: "Project management"