diff --git a/_pkgdown.yml b/_pkgdown.yml index 8c29da9..197c218 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -47,6 +47,7 @@ reference: - create_omics_set - create_omics_set_factory - create_multiomics_set + - add_omics_set - MetabolomeSet - PhenotypeSet - add_metabo @@ -61,6 +62,7 @@ reference: - get_features - get_samples - get_datasets + - get_dataset_matrix - get_features_metadata - get_samples_metadata - get_samples_metadata_combined @@ -75,6 +77,7 @@ reference: - plot_density_data - plot_meansd_data - plot_data_covariate + - plot_data_heatmap - subtitle: "Modifying" desc: "Modifying or subsetting datasets or metadata" contents: @@ -88,6 +91,7 @@ reference: desc: "PCA and missing values imputation on multi-omics set" contents: - run_pca + - run_pca_matrix - get_complete_data - pca_complete_data_factory - plot_screeplot_pca @@ -109,6 +113,8 @@ reference: contents: - select_features_mad - select_features_cov + - select_features_mad_matrix + - select_features_cov_matrix - get_filtered_dataset_variability - feature_preselection_mad_factory - feature_preselection_cov_factory @@ -116,6 +122,7 @@ reference: - plot_feature_preselection_cov - subtitle: "Supervised (sPLS-DA)" contents: + - get_input_splsda - perf_splsda - run_splsda - get_filtered_dataset_splsda @@ -152,6 +159,7 @@ reference: - subtitle: "sPLS" desc: "Unsupervised integration of 2 datasets with the sPLS method from mixOmics" contents: + - get_input_spls - get_input_mixomics_unsupervised - starts_with("spls_") @@ -160,6 +168,8 @@ reference: contents: - get_output - get_latent_dimensions + - get_top_features + - get_selected_features - subtitle: "Plotting functions" contents: - plot_variance_explained @@ -216,4 +226,4 @@ reference: contents: - '`add_metabo,MultiDataSet,MetabolomeSet-method`' - '`add_pheno,MultiDataSet,PhenotypeSet-method`' - - starts_with(".") + - starts_with("\\.")