Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Support HDF5 outputs again #89

Open
hisakatha opened this issue Dec 30, 2021 · 1 comment
Open

Support HDF5 outputs again #89

hisakatha opened this issue Dec 30, 2021 · 1 comment

Comments

@hisakatha
Copy link

Hello,

I noticed that the HDF5 output (--csv_h5) option in ipdSummary was removed at d5675a4, but I could not find related discussion.
I would like ipdSummary to support the HDF5 output again, if there are no problems.

In addition, I would like the SMRT Tools manual to be consistent with the implementation, since it still refers to the --csv_h5 option (p. 48).
@natechols
Copy link
Contributor

natechols commented Jan 3, 2022 •
edited
Loading

Sorry, h5py is a difficult dependency to maintain, and that particular feature was ultimately more trouble to run than it was worth. If you want to use it anyway, you could check out the smrtlink-5.0.0 branch:
https://github.com/PacificBiosciences/kineticsTools/tree/smrtlink-5.0.0
But thank you for pointing out the documentation error, I will get that fixed.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@natechols @hisakatha