CONTRIBUTING.md

How to contribute

Set up

Create virtual environment

With virtualenv

# create a virtual environment and "activate" it
virtualenv -p /usr/bin/python3.8 envs/dataviz_python
source envs/dataviz_python/bin/activate

# install in this environment all the Python packages
# listed in the requirements.txt file
pip install -r requirements.txt

With conda

The first time

conda env create -n dataviz_python -f ./binder/environment.yml

To update the environment after changes were made to ./binder/environment.yml

conda env update -n dataviz_pythonv -f ./binder/environment.yml

Download the required data

We are using the fact that the openneuro datasets can be accessed through their siblings on github:

https://github.com/OpenNeuroDatasets

For more info see the handbook: http://handbook.datalad.org/en/latest/basics/101-180-FAQ.html#how-does-datalad-interface-with-openneuro

datalad clone https://github.com/OpenNeuroDatasets/ds003542.git inputs/ds003542/
datalad get inputs/ds003542/sub-01/func/sub-01_task-compL1_run-1*
datalad get inputs/ds003542/sub-01/anat/