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nanopore reads deduplication #593

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Haper699 opened this issue Jan 6, 2025 · 0 comments
Open

nanopore reads deduplication #593

Haper699 opened this issue Jan 6, 2025 · 0 comments

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@Haper699
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Haper699 commented Jan 6, 2025

Hello
repost
Should I use the dedup option when filtering my reads using Fastp while working on FASTQ files generated with Nanopore sequencing technology? I'm working on amplicon sequencing of 1.5 to 3 kb and the goal is to detect variants.

-D, --dedup enable deduplication to drop the duplicated reads/pairs

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