Diversity of input folder names

[Dx-wmc]

It's great to see such a great tool, I realized in my own case that if I use a Bakta folder, the fna file needs to be the same as the folder name. For example if my folder is set to Ecoli_23_BAKTA, StORF will only look for Ecoli_23_BAKTA.fna, when in fact the contents of my folder is Ecoli_23.fna. So would it be possible to add an option to cope with this situation.

[NickJD]

Hi. I am currently looking into making it easier and more 'user-driven' for selecting input files and hopefully, I will have some progress on this soon.
Thanks for the request.

[NickJD]

Sorry for the delay.
Please try v1.2.0 with the "-af" option to provide the alternative filename:
StORF-Reporter -anno Bakta Out_Dir -p ./Ecoli_23_BAKTA -af Ecoli_23

[elchaarn]

Hi Nick, I have a similar problem when using the "Multiple_Out_Dirs": #1
Can you make the above modification for running multiple directories with names different than the file names?