You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'm relatively new to nvbio, and I was looking for a library that provides edit distance/Levenshtein distance calculation on GPU given a pair of genomes represented as strings. While I have found a GetEditDistance implementation in struct BamAlignment, it's not clear to me neither how the alignment struct should be initialized nor how to build a functional interface like the one described above (get the edit distance given two strings), and I couldn't find implementations in the provided examples. Would it be possible to provide a short example of how to use the edit distance using nvbio?
The text was updated successfully, but these errors were encountered:
I'm relatively new to nvbio, and I was looking for a library that provides edit distance/Levenshtein distance calculation on GPU given a pair of genomes represented as strings. While I have found a
GetEditDistance
implementation instruct BamAlignment
, it's not clear to me neither how the alignment struct should be initialized nor how to build a functional interface like the one described above (get the edit distance given two strings), and I couldn't find implementations in the provided examples. Would it be possible to provide a short example of how to use the edit distance using nvbio?The text was updated successfully, but these errors were encountered: