Citing mykrobe

Please cite us if you use Mykrobe in a publication.

The citation to use is:

Hunt M, Bradley P, Lapierre SG et al. Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe [version 1; peer review: 2 approved, 1 approved with reservations]. Wellcome Open Res 2019, 4:191 (https://doi.org/10.12688/wellcomeopenres.15603.1)

An addition to the above citation, if you use one of the following panels please cite the relevant publications.

Species	Panel	Citation(s)
tb	202010	[1] and [2]
tb	202001	[1] and [2]
tb	walker-2015	[2]
tb	bradley-2015	[3]
staph	20170217	[3]
sonnei	20201012	Hawkey 2020 (details TBC)

[1] The CRyPTIC Consortium and the 100,000 Genomes Project. Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing. N Engl J Med 2018; 379:1403-1415. https://www.nejm.org/doi/full/10.1056/NEJMoa1800474.

[2] Walker, Timothy M et al. “Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study.” The Lancet. Infectious diseases vol. 15,10 (2015): 1193-1202. https://dx.doi.org/10.1016%2FS1473-3099(15)00062-6

[3] Bradley, P., Gordon, N., Walker, T. et al. Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis. Nat Commun 6, 10063 (2015). https://doi.org/10.1038/ncomms10063