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rooting when search taxon is inclusive of initial outgroup #102

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LunaSare opened this issue Jun 4, 2020 · 0 comments
Open

rooting when search taxon is inclusive of initial outgroup #102

LunaSare opened this issue Jun 4, 2020 · 0 comments

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@LunaSare
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LunaSare commented Jun 4, 2020

How it is coded now: it will only take into account taxa from original alignment, and will mark as outgroup everything that is not part of the ingroup (as designated in opentree). All new added sequences will be marked as ingroup.

Fix: get the mrca of newly added sequences
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