DESCRIPTION

Package: Canek
Type: Package
Title: Batch Correction of Single Cell Transcriptome Data
Version: 0.2.5
Authors@R: c(
    person("Martin", "Loza", email = "martin.loza.lopez@gmail.com", role = c("aut", "cre"), 
        comment = c(ORCID = "0000-0002-3342-2643")),
    person("Diego", "Diez", email = "diego10ruiz@gmail.com", role = c("aut"),
        comment = c(ORCID = "0000-0002-2325-4893"))
    )
Description: Non-linear/linear hybrid method for batch-effect correction
    that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between 
    datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) <doi:10.1093/nargab/lqac022>.
Depends:
    R (>= 3.5.0)
Imports:
    FNN,
    irlba,
    numbers,
    fpc,
    bluster,
    igraph,
    matrixStats,
    utils
Suggests:
    testthat (>= 2.1.0),
    Seurat,
    SingleCellExperiment,
    SummarizedExperiment,
    scater,
    batchelor,
    scran,
    knitr,
    rmarkdown,
    patchwork,
    ggplot2
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://martinloza.github.io/Canek/
BugReports: https://github.com/MartinLoza/Canek/issues