.gitignore

# Environment-related files
/.venv

# IDE-specific files
/.vscode

# Results and test directories
xppbe/Test.yaml
xppbe/Test.py
xppbe/Test/
notebooks/analysis/other/
xppbe/results
/.results
xppbe/temp
xppbe/S_test.py
xppbe/S_temp.py

# Compiled Python files
__pycache__/
/__pycache__
*.pyc

# Temporary and Log files
~$*
results_temp*
*.log
Temp/
*.pyc

# Shell script files
pscp.bash
putty.bash
pscp_pbj.bash
pscp_sims.bash
pscp_post.bash
bash_codes/

# Test-related directories
/.test
.ipynb_checkpoints/


# Simulation-related directories
xppbe/simulations_list/*
xppbe/simulations_list/*/
!xppbe/simulations_list/Main.py
xppbe/pbj/*
xppbe/pbj/*/
!xppbe/pbj/pbj.py
xppbe/Model/pbj/*
xppbe/Model/pbj/*/
!xppbe/Model/pbj/pbj.py
!xppbe/Model/pbj/__init__.py
.pbj/
tutorials/results/
xppbe/Molecules/mesh_files/
results/

# Files related to notes
/.notes
/.notas
/.test
/.tests

/xppbe.egg-info
build/

.pytest_cache
/.Lab

/thesis

/.achom