vis-convert does not write out autos

[d3v-null]

export vis=/scratch/mwaeor/dev/nfdata/1061316544/prep/birli_1061316544_2s_40kHz_edg80.uvfits

singularity exec --cleanenv docker://mwatelescope/mwa-demo:latest-amd64 python -c 'uvd = __import__("pyuvdata").UVData(); path=__import__("sys").argv[-1]; uvd.read(path, read_data=False); uvd.read(path, times=[uvd.time_array[len(uvd.time_array)//2]]); print(uvd.get_data(55,55)[...,0])' $vis

[[37920.348+0.j 37648.33 +0.j 37734.61 +0.j 37459.35 +0.j 37467.63 +0.j
  37048.688+0.j 37035.234+0.j 37054.668+0.j 36972.266+0.j 37110.51 +0.j
  37014.957+0.j 36785.688+0.j 36403.78 +0.j 36633.223+0.j 36332.93 +0.j
  36218.047+0.j 36482.51 +0.j 36066.6  +0.j 35851.117+0.j 36032.062+0.j
  35800.58 +0.j 35798.53 +0.j 35912.31 +0.j 35772.19 +0.j 35877.33 +0.j
...

hyperdrive vis-convert --data /scratch/mwaeor/dev/nfdata/1061312152/prep/birli_1061312152_2s_40kHz_edg80.uvfits --freq-average 80kHz --time-average 2s --outputs birli_1061312152_2s_80kHz.ssins.uvfits --tile-flags Tile105

export vis=birli_1061312152_2s_80kHz.ssins.uvfits

export vis=/scratch/mwaeor/dev/nbdata/birli_novv_ssins_480_2s_80kHz_take2/birli_1061312152_2s_80kHz.ssins.uvfits
singularity exec --bind $PWD --home=$PWD/.fakehome --cleanenv docker://mwatelescope/mwa-demo:latest-amd64 python -c 'uvd = __import__("pyuvdata").UVData(); path=__import__("sys").argv[-1]; uvd.read(path, read_data=False); uvd.read(path, times=[uvd.time_array[len(uvd.time_array)//2]], antenna_nums=[55]); print(uvd.get_data(55,55, "xx")); print(uvd.get_flags(55,55, "xx"))' $vis

[[    0. +0.j     0. +0.j     0. +0.j     0. +0.j     0. +0.j     0. +0.j
  36518.5+0.j     0. +0.j     0. +0.j     0. +0.j     0. +0.j     0. +0.j
[[ True  True  True  True  True  True False  True  True  True  True  True
   True  True  True  True  True  True  True  True  True  True  True  True