diff --git a/datascience/poetry.lock b/datascience/poetry.lock
index 4079b5d996..2f688b2f0c 100644
--- a/datascience/poetry.lock
+++ b/datascience/poetry.lock
@@ -1697,13 +1697,13 @@ speedup = ["python-levenshtein (>=0.12)"]
 
 [[package]]
 name = "geoalchemy2"
-version = "0.16.0"
+version = "0.17.0"
 description = "Using SQLAlchemy with Spatial Databases"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "geoalchemy2-0.16.0.tar.gz", hash = "sha256:df64bb72af70daafaac3f359492c96501c37ab85ed20f9510c99cc6d02881100"},
+    {file = "GeoAlchemy2-0.17.0-py3-none-any.whl", hash = "sha256:2218d7d5a8f123cc4b88cbf3f9595ef3b2741c26e417a2bff56ba96ac9208919"},
+    {file = "geoalchemy2-0.17.0.tar.gz", hash = "sha256:00e105e6a93cc2815914a29acb4fc129da5b2ebd500bf447b108e7904138c83f"},
 ]
 
 [package.dependencies]
@@ -1874,54 +1874,54 @@ files = [
 
 [[package]]
 name = "h3"
-version = "4.1.2"
+version = "4.2.1"
 description = "Uber's hierarchical hexagonal geospatial indexing system"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "h3-4.2.1-cp39-cp39-musllinux_1_2_x86_64.whl", hash = "sha256:a4e8e211074b1c88c2a1ad8372f5ce48d2d1fd1b13533e52b54fdeba4e0fe6f8"},
+    {file = "h3-4.2.1-cp39-cp39-win_amd64.whl", hash = "sha256:6af355d3c8d7316b3a5606f2fe67266e81ee3bfeba239d574373a7df0925ff05"},
+    {file = "h3-4.2.1.tar.gz", hash = "sha256:e64afe4166a6e31b06df71f0da6039683b04d88c2fec8c73d7bf4d5f36d7cb23"},
 ]
 
 [package.extras]
 all = ["cartopy", "contextily", "geodatasets", "geopandas", "geoviews", "h3[test]", "jupyter-book", "jupyterlab", "jupyterlab-geojson", "matplotlib", "sphinx (>=7.3.3)"]
 numpy = ["numpy"]
-test = ["flake8", "numpy", "pylint", "pytest", "pytest-cov"]
+test = ["numpy", "pytest", "pytest-cov", "ruff"]
 
 [[package]]
 name = "html5lib"
@@ -3992,13 +3992,13 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "pre-commit"
-version = "4.0.1"
+version = "4.1.0"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 optional = false
 python-versions = ">=3.9"
 files = [
-    {file = "pre_commit-4.0.1-py2.py3-none-any.whl", hash = "sha256:efde913840816312445dc98787724647c65473daefe420785f885e8ed9a06878"},
-    {file = "pre_commit-4.0.1.tar.gz", hash = "sha256:80905ac375958c0444c65e9cebebd948b3cdb518f335a091a670a89d652139d2"},
+    {file = "pre_commit-4.1.0-py2.py3-none-any.whl", hash = "sha256:d29e7cb346295bcc1cc75fc3e92e343495e3ea0196c9ec6ba53f49f10ab6ae7b"},
+    {file = "pre_commit-4.1.0.tar.gz", hash = "sha256:ae3f018575a588e30dfddfab9a05448bfbd6b73d78709617b5a2b853549716d4"},
 ]
 
 [package.dependencies]
@@ -4498,13 +4498,13 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pypdf"
-version = "5.1.0"
+version = "5.2.0"
 description = "A pure-python PDF library capable of splitting, merging, cropping, and transforming PDF files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "pypdf-5.1.0-py3-none-any.whl", hash = "sha256:3bd4f503f4ebc58bae40d81e81a9176c400cbbac2ba2d877367595fb524dfdfc"},
-    {file = "pypdf-5.1.0.tar.gz", hash = "sha256:425a129abb1614183fd1aca6982f650b47f8026867c0ce7c4b9f281c443d2740"},
+    {file = "pypdf-5.2.0-py3-none-any.whl", hash = "sha256:d107962ec45e65e3bd10c1d9242bdbbedaa38193c9e3a6617bd6d996e5747b19"},
+    {file = "pypdf-5.2.0.tar.gz", hash = "sha256:7c38e68420f038f2c4998fd9d6717b6db4f6cef1642e9cf384d519c9cf094663"},
 ]
 
 [package.extras]
@@ -6508,4 +6508,4 @@ test = ["pytest"]
 [metadata]
 lock-version = "2.0"
 python-versions = "3.11.6"
-content-hash = "004a505f57e35eeb3e05b8f0daadd7097c13198fe8473923bc373fbb84dc4dce"
+content-hash = "e9229da17a5c47760faa3666a67e4db97df8dff2713d5f7aa8eda414c3942fb4"
diff --git a/datascience/pyproject.toml b/datascience/pyproject.toml
index 3575f122e4..3359af8f39 100644
--- a/datascience/pyproject.toml
+++ b/datascience/pyproject.toml
@@ -11,13 +11,13 @@ pandas = {extras = ["postgresql"], version = "^2.2.1"}
 black = "^24.3.0"
 isort = "^5.12.0"
 coverage = "^7.6.10"
-pre-commit = "^4.0.1"
+pre-commit = "^4.1.0"
 flake8 = "^7.1.1"
 python-dotenv = "^1.0.0"
 cx-oracle = "^8.3.0"
 scrapy = "^2.11.0"
 simplejson = "^3.19.2"
-geoalchemy2 = "^0.16.0"
+geoalchemy2 = "^0.17.0"
 rtree = "^1.0.1"
 jinja2 = "^3.1.5"
 pytz = "^2024.2"
@@ -30,8 +30,8 @@ css-inline = "^0.14.6"
 prefect = "^1.3"
 requests-mock = "^1.11.0"
 duckdb = "^0.10.1"
-h3 = "^4.1.2"
-pypdf = "^5.1.0"
+h3 = "^4.2.1"
+pypdf = "^5.2.0"
 fiona = "^1.10.1"