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The probelm about simulation and MEG mapping #7

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sjbt007 opened this issue Aug 1, 2022 · 1 comment
Open

The probelm about simulation and MEG mapping #7

sjbt007 opened this issue Aug 1, 2022 · 1 comment

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@sjbt007
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sjbt007 commented Aug 1, 2022

Hi Luke,
Sourry to distrub you. Recently I face some warning about the dataset I created from T1.gmz by freesurfer when I change the signal to eeg/meg map.

The probelms I faced with are about the simulation and the function :

elec_pos = _find_topomap_coords(self.info, self.info.ch_names,ignore_overlap=True) in 625 of net.py of esinet.

image

The probelms are:
image
image

and
image

What's more I face another probelm about the channel type when I simulate data. The problem is
image

image

There are two type of my meg channel but I don't know how to drop them. So I comment these code out. But I worry about it will have bad effect on the simulated data.

The workflow of creating fwd.fif.
I firstly use the Freesurfer and
mne.bem.make_watershed_bem(subject=subject, subjects_dir=subjects_dir,
overwrite=True, verbose=True, show=False)
make_scalp_surfaces(subject,subjects_dir=subjects_dir,overwrite=True)

to creat bem layer from T1.mgz of subject and follow the tutorial of MNE to coregistate the bem forward model to get fwd.fif

The link is https://mne.tools/stable/auto_tutorials/forward/25_automated_coreg.html

To sum up, I face four problem. One is about the two channel types when I simulate data, others are about the elec_pos = _find_topomap_coords warnings

I dont know how to deal with them and if they have great negtivate effects on the result we get.
Looking for your relpy. Thanks.

@sjbt007 sjbt007 changed the title The probelm The probelm about simulation and MEG mapping Aug 1, 2022
@Sarah-air
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Hi, I got the same problem,have you solved it?

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