environment for salmon2counts fails to build #21

rdmorin · 2021-01-11T15:59:17Z

There is some conflict in the environment for salmon2counts that causes it to take forever to build. I eventually gave up after about an hour of this. Could someone else test it to see if this is in need of fixing or is somehow unique to me?

(base) -bash-4.2$ conda env create -f src/lcr-scripts/salmon2counts/1.0/salmon2counts.yaml
Collecting package metadata (repodata.json): done
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
Examining conflict for python pip wheel setuptools harfbuzz r-base cairo certifi python_abi pango glib:  55%|█████████████████████████████████▋                           | 123/223 [33:31<05:24,  3.24s/\ ]
failed                                                                                                                                                                                                   \
Solving environment: \
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
Examining conflict for r-dbplyr r-rvest r-httr r-htmltools r-reshape2 r-futile.logger r-readr r-vctrs bioconductor-biocparallel r-ggplot2 r-isoband r-pkgbuild r-rsqlite r-progress r-forcats r-knitr r-d/failed

The text was updated successfully, but these errors were encountered:

Lakshay-sethi · 2021-01-11T19:34:17Z

@rdmorin It took me 2 minutes to build the environment.

rdmorin · 2021-01-11T20:30:23Z

Was this on a gphost at the GSC or elsewhere?

Lakshay-sethi · 2021-01-11T20:34:40Z

Thanos

rdmorin · 2021-01-11T20:36:23Z

Can you try on the GSC? I tried again and it's still finding conflicts and choking.

Lakshay-sethi · 2021-01-11T21:17:33Z

I tried its taking approximately 15 minutes. I will try to find a faster way.

Kdreval · 2021-02-01T22:05:50Z

Lakshay, can you please to investigate this and see if any modification to the environment is needed?

Lakshay-sethi · 2021-02-03T01:05:24Z

Current progress:

gp10
vscode terminal
5:01 pm - 3.7 min
normal terminal
4:54 pm - 3.5 min

Thanos
vscode terminal
4:45 pm - ~1 min
normal terminal
4:47 pm - 41 sec

rdmorin · 2021-02-03T01:23:33Z

Collecting package metadata (repodata.json): done
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
Examining conflict for r-plogr r-rsqlite r-nlme r-cli r-tidyverse r-stringi bioconductor-genomicranges bioconductor-rtracklayer r-generics r-rvest r-tibble bioconductor-iranges bioconductor-genomeinfo

rdmorin · 2021-02-03T01:41:11Z

I attempted to update conda but the result is not encouraging.

UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:

Specifications:

  - pyfaidx -> python[version='2.7.*|3.5.*|3.6.*|3.4.*']

Your python: python=3.7

If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.

The following specifications were found to be incompatible with a past
explicit spec that is not an explicit spec in this operation (conda):

  - conda

The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package ncurses conflicts for:
python=3.7 -> readline[version='>=7.0,<8.0a0'] -> ncurses[version='5.9.*|>=6.0,<7.0a0|6.0.*']
pyfaidx -> python -> ncurses[version='5.9.*|5.9|>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.*']
python=3.7 -> ncurses[version='>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0']
scipy -> pypy3.7[version='>=7.3.3'] -> ncurses[version='5.9.*|5.9|>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.*']
certifi -> pypy3.7[version='>=7.3.3'] -> ncurses[version='5.9.*|5.9|>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.*']
samtools=1.9 -> ncurses[version='>=5.9,<5.10.0a0|>=6.1,<6.2.0a0']
conda -> pypy3.6[version='>=7.3.2'] -> ncurses[version='5.9.*|5.9|>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.*']
pyega3 -> python[version='>3'] -> ncurses[version='5.9.*|5.9|>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.*']
conda-build -> python[version='>=3.6,<3.7.0a0'] -> ncurses[version='5.9.*|5.9|>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.*']
anaconda-client -> python -> ncurses[version='5.9.*|5.9|>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.*']
bedops -> samtools -> ncurses[version='5.9|5.9.*|>=5.9,<5.10.0a0|>=6.1,<6.2.0a0|>=6.2,<6.3.0a0']
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> ncurses[version='5.9.*|5.9|>=6.1,<6.3.0a0|>=6.2,<6.3.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.*']

Package libstdcxx-ng conflicts for:
conda[version='>=4.9.2'] -> python[version='>=3.6,<3.7.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
coreutils -> libgcc -> libstdcxx-ng[version='>=7.2.0']
pyega3 -> python[version='>3'] -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
scipy -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
git -> expat[version='>=2.2.9,<2.3.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=9.3.0|>=7.2.0']
python=3.7 -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
bedops -> libstdcxx-ng[version='>=4.9|>=7.3.0']
bcftools -> curl[version='>=7.59.0,<8.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.2.0|>=7.3.0|>=9.3.0|>=7.5.0']
anaconda-client -> python -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
conda -> python[version='>=3.6,<3.7.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
pyfaidx -> python -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
bedops -> libgcc -> libstdcxx-ng[version='>=7.2.0']
samtools=1.9 -> ncurses[version='>=6.1,<6.2.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.2.0']
conda-build -> patchelf -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=7.2.0|>=9.3.0']
certifi -> python[version='>=3.7,<3.8.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']

Package _openmp_mutex conflicts for:
bcftools -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5']
bedops -> libgcc-ng[version='>=7.3.0'] -> _openmp_mutex[version='>=4.5']
scipy -> libgcc-ng[version='>=9.3.0'] -> _openmp_mutex[version='*|>=4.5',build=*_llvm]
openssl -> libgcc-ng[version='>=9.3.0'] -> _openmp_mutex[version='>=4.5']
git -> libgcc-ng[version='>=9.3.0'] -> _openmp_mutex[version='>=4.5']
python=3.7 -> libgcc-ng[version='>=9.3.0'] -> _openmp_mutex[version='>=4.5']
coreutils -> libgcc-ng[version='>=7.3.0'] -> _openmp_mutex[version='>=4.5']
samtools=1.9 -> libgcc-ng[version='>=7.3.0'] -> _openmp_mutex[version='>=4.5']

Package xz conflicts for:
pyega3 -> python[version='>3'] -> xz[version='5.0.*|5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> xz[version='5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
scipy -> pypy3.7[version='>=7.3.3'] -> xz[version='5.0.*|5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
bcftools -> xz[version='5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0']
samtools=1.9 -> xz[version='>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0']
bcftools -> htslib[version='>=1.11,<1.12.0a0'] -> xz[version='>=5.2.5,<5.3.0a0']
conda -> pypy3.6[version='>=7.3.2'] -> xz[version='5.0.*|5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
certifi -> pypy3.7[version='>=7.3.3'] -> xz[version='5.0.*|5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
bedops -> samtools -> xz[version='5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0']
anaconda-client -> python -> xz[version='5.0.*|5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
python=3.7 -> xz[version='>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0']
pyfaidx -> python -> xz[version='5.0.*|5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
conda-build -> python[version='>=3.6,<3.7.0a0'] -> xz[version='5.0.*|5.2.*|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']

Package certifi conflicts for:
conda -> requests[version='>=2.18.4,<3'] -> certifi[version='>=2016.09|>=2016.9.26|>=2017.4.17']
pyega3 -> requests -> certifi[version='>=2017.4.17']
anaconda-client -> requests[version='>=2.9.1'] -> certifi[version='>=2016.09|>=2016.9.26|>=2017.4.17']
conda-build -> requests -> certifi[version='>=2016.09|>=2016.9.26|>=2017.4.17']
conda[version='>=4.9.2'] -> requests[version='>=2.18.4,<3'] -> certifi[version='>=2016.09|>=2016.9.26|>=2017.4.17']

Package pytz conflicts for:
anaconda-client -> pytz
conda-build -> pytz
bcftools -> matplotlib -> pytz

Package libffi conflicts for:
conda -> pypy3.6[version='>=7.3.2'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
scipy -> pypy3.7[version='>=7.3.3'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
anaconda-client -> python -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
pyega3 -> python[version='>3'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
python=3.7 -> libffi[version='>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
certifi -> pypy3.7[version='>=7.3.3'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
pyfaidx -> python -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
conda-build -> python[version='>=3.6,<3.7.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
git -> gettext -> libffi[version='>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']

Package sqlite conflicts for:
conda -> pypy3.6[version='>=7.3.2'] -> sqlite[version='3.13.*|3.20.*|>=3.24.0,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|>=3.31.1,<4.0a0|>=3.29.0,<4.0a0|>=3.23.1,<4.0a0|>=3.22.0,<4.0a0|>=3.20.1,<4.0a0|>=3.25.1,<4.0a0|>=3.27.2,<4.0a0|>=3.30.0,<4.0a0|3.9.*']
pyfaidx -> python -> sqlite[version='3.13.*|3.20.*|>=3.24.0,<4.0a0|>=3.25.1,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|3.9.*|>=3.31.1,<4.0a0|>=3.30.0,<4.0a0|>=3.29.0,<4.0a0|>=3.27.2,<4.0a0|>=3.23.1,<4.0a0|>=3.22.0,<4.0a0|>=3.20.1,<4.0a0']
anaconda-client -> python -> sqlite[version='3.13.*|3.20.*|>=3.24.0,<4.0a0|>=3.25.1,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|3.9.*|>=3.31.1,<4.0a0|>=3.30.0,<4.0a0|>=3.29.0,<4.0a0|>=3.27.2,<4.0a0|>=3.23.1,<4.0a0|>=3.22.0,<4.0a0|>=3.20.1,<4.0a0']
pyega3 -> python[version='>3'] -> sqlite[version='3.13.*|3.20.*|>=3.24.0,<4.0a0|>=3.25.1,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|3.9.*|>=3.31.1,<4.0a0|>=3.30.0,<4.0a0|>=3.29.0,<4.0a0|>=3.27.2,<4.0a0|>=3.23.1,<4.0a0|>=3.22.0,<4.0a0|>=3.20.1,<4.0a0']
conda-build -> python[version='>=3.6,<3.7.0a0'] -> sqlite[version='3.13.*|3.20.*|>=3.24.0,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|>=3.31.1,<4.0a0|>=3.29.0,<4.0a0|>=3.23.1,<4.0a0|>=3.22.0,<4.0a0|>=3.20.1,<4.0a0|>=3.25.1,<4.0a0|>=3.27.2,<4.0a0|>=3.30.0,<4.0a0|3.9.*']
scipy -> pypy3.7[version='>=7.3.3'] -> sqlite[version='3.13.*|3.20.*|>=3.24.0,<4.0a0|>=3.25.1,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|>=3.31.1,<4.0a0|>=3.29.0,<4.0a0|>=3.27.2,<4.0a0|>=3.30.0,<4.0a0|>=3.23.1,<4.0a0|>=3.22.0,<4.0a0|>=3.20.1,<4.0a0|3.9.*']
python=3.7 -> sqlite[version='>=3.24.0,<4.0a0|>=3.25.1,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|>=3.31.1,<4.0a0|>=3.29.0,<4.0a0|>=3.27.2,<4.0a0']
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> sqlite[version='3.13.*|3.20.*|>=3.24.0,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|>=3.31.1,<4.0a0|>=3.29.0,<4.0a0|>=3.23.1,<4.0a0|>=3.22.0,<4.0a0|>=3.20.1,<4.0a0|>=3.25.1,<4.0a0|>=3.27.2,<4.0a0|>=3.30.0,<4.0a0']
certifi -> pypy3.7[version='>=7.3.3'] -> sqlite[version='3.13.*|3.20.*|>=3.24.0,<4.0a0|>=3.25.1,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.28.0,<4.0a0|>=3.30.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|>=3.31.1,<4.0a0|>=3.29.0,<4.0a0|>=3.27.2,<4.0a0|>=3.23.1,<4.0a0|>=3.22.0,<4.0a0|>=3.20.1,<4.0a0|>=3.30.0,<4.0a0|3.9.*']

Package libiconv conflicts for:
conda-build -> libarchive -> libiconv[version='>=1.15,<1.17.0a0|>=1.16,<1.17.0a0']
git -> libiconv[version='1.15|1.15.*|>=1.15,<1.17.0a0|>=1.16,<1.17.0a0']

Package zlib conflicts for:
pyega3 -> python[version='>3'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8']
samtools=1.9 -> zlib[version='>=1.2.11,<1.3.0a0']
python=3.7 -> zlib[version='>=1.2.11,<1.3.0a0']
samtools=1.9 -> curl[version='>=7.59.0,<8.0a0'] -> zlib==1.2.11
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8']
certifi -> pypy3.7[version='>=7.3.3'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
git -> zlib[version='1.2.*|1.2.11|1.2.11.*|>=1.2.11,<1.3.0a0|1.2.8']
conda -> pypy3.6[version='>=7.3.2'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
scipy -> pypy3.7[version='>=7.3.3'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
bedops -> samtools -> zlib[version='1.2.11.*|>=1.2.11,<1.3.0a0|1.2.8.*|1.2.8']
bcftools -> curl[version='>=7.59.0,<8.0a0'] -> zlib[version='1.2.*|1.2.11']
conda-build -> python[version='>=3.6,<3.7.0a0'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
anaconda-client -> python -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
pyfaidx -> python -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
bcftools -> zlib[version='1.2.11.*|>=1.2.11,<1.3.0a0|1.2.8']

Package curl conflicts for:
samtools=1.9 -> htslib[version='>=1.9,<1.10.0a0'] -> curl[version='>=7.64.1,<8.0a0']
git -> curl[version='>=7.44.0,<8|>=7.59.0,<8.0a0|>=7.64.0,<8.0a0|>=7.64.1,<8.0a0|>=7.69.1,<8.0a0|>=7.71.1,<8.0a0']
bcftools -> curl[version='>=7.59.0,<8.0a0|>=7.64.0,<8.0a0|>=7.64.1,<8.0a0']
samtools=1.9 -> curl[version='>=7.59.0,<8.0a0|>=7.64.0,<8.0a0']
bedops -> samtools -> curl[version='>=7.59.0,<8.0a0|>=7.64.0,<8.0a0|>=7.71.1,<8.0a0|>=7.64.1,<8.0a0']

Package krb5 conflicts for:
git -> curl[version='>=7.71.1,<8.0a0'] -> krb5[version='1.14.*|>=1.14.6,<1.15.0a0|>=1.16.1,<1.17.0a0|>=1.16.3,<1.17.0a0|>=1.16.4,<1.17.0a0|>=1.17.1,<1.18.0a0|>=1.18.2,<1.19.0a0|>=1.16.2,<1.17.0a0']
bcftools -> curl[version='>=7.64.1,<8.0a0'] -> krb5[version='1.14.*|>=1.14.6,<1.15.0a0|>=1.16.1,<1.17.0a0|>=1.16.3,<1.17.0a0|>=1.16.4,<1.17.0a0|>=1.17.1,<1.18.0a0|>=1.18.2,<1.19.0a0|>=1.16.2,<1.17.0a0']
samtools=1.9 -> curl[version='>=7.64.0,<8.0a0'] -> krb5[version='1.14.*|>=1.14.6,<1.15.0a0|>=1.16.1,<1.17.0a0|>=1.16.3,<1.17.0a0|>=1.16.4,<1.17.0a0|>=1.17.1,<1.18.0a0|>=1.18.2,<1.19.0a0|>=1.16.2,<1.17.0a0']

Package libgcc-ng conflicts for:
scipy -> libopenblas[version='>=0.3.2,<0.3.3.0a0'] -> libgcc-ng[version='>=8.2.0']
certifi -> pypy3.7[version='>=7.3.3'] -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
pyega3 -> psutil -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
conda-build -> conda-package-handling[version='>=1.3'] -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=7.2.0|>=9.3.0']
openssl -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
bedops -> samtools -> libgcc-ng[version='>=4.9|>=7.5.0|>=7.2.0']
bcftools -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0']
bcftools -> gsl[version='>=2.6,<2.7.0a0'] -> libgcc-ng[version='>=7.2.0|>=9.3.0']
samtools=1.9 -> ncurses[version='>=6.1,<6.2.0a0'] -> libgcc-ng[version='>=7.2.0|>=7.5.0|>=9.3.0']
python=3.7 -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
samtools=1.9 -> libgcc-ng[version='>=4.9|>=7.3.0']
conda[version='>=4.9.2'] -> conda-package-handling[version='>=1.3.0'] -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
coreutils -> libgcc -> libgcc-ng[version='>=7.2.0']
scipy -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
anaconda-client -> python -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
coreutils -> libgcc-ng[version='>=4.9|>=7.3.0']
pyfaidx -> python -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
git -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
conda -> conda-package-handling[version='>=1.3.0'] -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=7.2.0']
bedops -> libgcc-ng[version='>=7.3.0']

Package pypy3.6 conflicts for:
pyfaidx -> python -> pypy3.6[version='7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*']
conda[version='>=4.9.2'] -> conda-package-handling[version='>=1.3.0'] -> pypy3.6[version='7.3.*|7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*|>=7.3.1|>=7.3.3']
conda -> pypy3.6[version='>=7.3.1|>=7.3.2']
certifi -> python[version='>=3.6,<3.7.0a0'] -> pypy3.6[version='7.3.*|7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*']
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2']
scipy -> numpy[version='>=1.19.5,<2.0a0'] -> pypy3.6[version='7.3.*|7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*|>=7.3.3']
bcftools -> matplotlib -> pypy3.6[version='>=7.3.2|>=7.3.3']
anaconda-client -> python -> pypy3.6[version='7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*|>=7.3.3|>=7.3.2|>=7.3.1']
conda-build -> beautifulsoup4 -> pypy3.6[version='7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*|>=7.3.1|>=7.3.3|>=7.3.2']
conda -> pycosat[version='>=0.6.3'] -> pypy3.6[version='7.3.*|7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*|>=7.3.3']
scipy -> pypy3.6[version='>=7.3.1|>=7.3.2']
certifi -> pypy3.6[version='>=7.3.1|>=7.3.2|>=7.3.3']
pyega3 -> psutil -> pypy3.6[version='7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*|>=7.3.1|>=7.3.2|>=7.3.3']

Package tzdata conflicts for:
anaconda-client -> python -> tzdata
pyfaidx -> python -> tzdata
conda-build -> python[version='>=3.9,<3.10.0a0'] -> tzdata
certifi -> python[version='>=3.9,<3.10.0a0'] -> tzdata
conda -> python[version='>=3.9,<3.10.0a0'] -> tzdata
scipy -> python[version='>=3.9,<3.10.0a0'] -> tzdata
pyega3 -> python[version='>3'] -> tzdata
conda[version='>=4.9.2'] -> python[version='>=3.9,<3.10.0a0'] -> tzdata

Package setuptools conflicts for:
conda -> setuptools[version='>=31.0.1']
conda -> ruamel_yaml -> setuptools
conda-build -> setuptools
conda[version='>=4.9.2'] -> setuptools[version='>=31.0.1']
anaconda-client -> setuptools
bcftools -> matplotlib -> setuptools
python=3.7 -> pip -> setuptools
conda-build -> conda[version='>=4.5'] -> setuptools[version='>=31.0.1']

Package libgcc conflicts for:
bcftools -> libgcc
coreutils -> libgcc
samtools=1.9 -> libdeflate -> libgcc
bedops -> libgcc[version='>=4.8.2']
scipy -> libgcc

Package enum34 conflicts for:
conda-build -> enum34
conda -> enum34

Package cryptography conflicts for:
conda[version='>=4.9.2'] -> pyopenssl[version='>=16.2.0'] -> cryptography[version='>=1.3.4|>=1.9|>=2.1.4|>=2.2.1|>=2.8|>=3.2']
conda -> pyopenssl[version='>=16.2.0'] -> cryptography[version='>=1.3|>=1.3.4|>=1.9|>=2.1.4|>=2.2.1|>=2.8|>=3.2']

Package six conflicts for:
scipy -> mkl-service[version='>=2,<3.0a0'] -> six
pyega3 -> python-htsget -> six
pyfaidx -> six
conda-build -> six
conda -> conda-package-handling[version='>=1.3.0'] -> six[version='>=1.13.0,<2.0.0|>=1.5.2']
anaconda-client -> six
anaconda-client -> python-dateutil[version='>=2.6.1'] -> six[version='>=1.5']
conda[version='>=4.9.2'] -> conda-package-handling[version='>=1.3.0'] -> six[version='>=1.5.2']

Package expat conflicts for:
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> expat[version='>=2.2.9,<2.3.0a0']
python=3.7 -> pypy3.7=7.3.3 -> expat[version='>=2.2.9,<2.3.0a0']
scipy -> pypy3.7[version='>=7.3.3'] -> expat[version='>=2.2.9,<2.3.0a0']
conda-build -> libarchive -> expat[version='>=2.2.4,<3.0a0|>=2.2.5,<2.3.0a0']
certifi -> pypy3.7[version='>=7.3.3'] -> expat[version='>=2.2.9,<2.3.0a0']
conda -> pypy3.6[version='>=7.3.2'] -> expat[version='>=2.2.9,<2.3.0a0']
git -> expat[version='2.2.*|>=2.2.5,<2.3.0a0|>=2.2.9,<2.3.0a0|>=2.2.6,<3.0a0|>=2.2.5,<3.0a0']

Package pyyaml conflicts for:
conda-build -> pyyaml
anaconda-client -> pyyaml[version='>=3.12']
conda -> pyyaml

Package libdeflate conflicts for:
samtools=1.9 -> htslib[version='>=1.9,<1.10.0a0'] -> libdeflate[version='>=1.3,<1.4.0a0']
samtools=1.9 -> libdeflate[version='>=1.0,<1.1.0a0']

Package tk conflicts for:
certifi -> pypy3.7[version='>=7.3.3'] -> tk[version='8.5.*|8.6.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
python=3.7 -> tk[version='>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
conda-build -> python[version='>=3.6,<3.7.0a0'] -> tk[version='8.5.*|8.6.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
pyfaidx -> python -> tk[version='8.5.*|8.6.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
anaconda-client -> python -> tk[version='8.5.*|8.6.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> tk[version='8.5.*|8.6.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
bcftools -> matplotlib -> tk[version='8.5.*|8.6.*|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
pyega3 -> python[version='>3'] -> tk[version='8.5.*|8.6.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
scipy -> pypy3.7[version='>=7.3.3'] -> tk[version='8.5.*|8.6.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
git -> tk[version='8.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
conda -> pypy3.6[version='>=7.3.2'] -> tk[version='8.5.*|8.6.*|>=8.6.10,<8.7.0a0|>=8.6.9,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']

Package tqdm conflicts for:
conda -> conda-package-handling[version='>=1.3.0'] -> tqdm
conda[version='>=4.9.2'] -> conda-package-handling[version='>=1.3.0'] -> tqdm
conda-build -> tqdm
pyega3 -> tqdm[version='>=4.26.0']

Package openssl conflicts for:
git -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a']
scipy -> pypy3.7[version='>=7.3.3'] -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a|>=1.0.2l,<1.0.3a']
bcftools -> htslib[version='>=1.11,<1.12.0a0'] -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.0.2m,<1.0.3a']
python=3.7 -> openssl[version='>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1b,<1.1.2a']
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a|>=1.0.2l,<1.0.3a|>=1.1.1b,<1.1.2a']
pyega3 -> python[version='>3'] -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a|>=1.0.2l,<1.0.3a']
conda-build -> python[version='>=3.6,<3.7.0a0'] -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a|>=1.0.2l,<1.0.3a|>=1.1.1i,<1.1.2a|>=1.1.1b,<1.1.2a']
pyfaidx -> python -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a|>=1.0.2l,<1.0.3a']
conda -> pypy3.6[version='>=7.3.2'] -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a|>=1.0.2l,<1.0.3a|>=1.1.1b,<1.1.2a']
anaconda-client -> python -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a|>=1.0.2l,<1.0.3a']
bedops -> samtools -> openssl[version='>=1.0.2p,<1.0.3a|>=1.0.2r,<1.0.3a|>=1.1.1a,<1.1.2a']
certifi -> pypy3.7[version='>=7.3.3'] -> openssl[version='1.0.*|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.0.2n,<1.0.3a|>=1.0.2m,<1.0.3a|>=1.0.2l,<1.0.3a']
git -> libcurl[version='>=7.65.3,<8.0a0'] -> openssl[version='>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a']

Package ca-certificates conflicts for:
conda -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
git -> openssl[version='>=1.1.1i,<1.1.2a'] -> ca-certificates
conda-build -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
python=3.7 -> openssl[version='>=1.1.1h,<1.1.2a'] -> ca-certificates
certifi -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
openssl -> ca-certificates
pyfaidx -> python -> ca-certificates
anaconda-client -> python -> ca-certificates
scipy -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates

Package libcblas conflicts for:
scipy -> libcblas[version='>=3.8.0,<4.0a0']
scipy -> blas=[build=openblas] -> libcblas[version='3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.9.0|3.9.0|3.9.0|3.9.0|3.9.0|3.9.0|3.9.0',build='4_mkl|5_mkl|7_mkl|9_mkl|10_mkl|11_mkl|19_mkl|0_openblas|5_openblas|6_openblas|7_openblas|10_openblas|11_openblas|12_openblas|13_openblas|14_openblas|15_openblas|16_openblas|7_openblas|6_openblas|5_openblas|17_openblas|9_openblas|8_openblas|4_openblas|3_openblas|2_openblas|7_mkl|6_mkl|5_mkl|21_mkl|20_mkl|18_mkl|16_mkl|15_mkl|14_mkl|13_mkl|12_mkl|8_mkl|6_mkl']

Package perl conflicts for:
perl-getopt-argparse -> perl=5.18.2
perl-getopt-argparse -> perl-getopt-long -> perl[version='5.22.0.*|>=5.26.2,<5.27.0a0|>=5.26.2,<5.26.3.0a0']
bcftools -> texlive-core -> perl[version='5.20.3.*|5.22.2.1|>=5.26.2,<5.26.3.0a0|5.20.3.1.*']
git -> perl[version='5.*|>=5.26.2,<5.26.3.0a0|>=5.26.2,<5.27.0a0']
bcftools -> perl

Package urllib3 conflicts for:
conda -> requests[version='>=2.18.4,<3'] -> urllib3[version='>=1.21.1,<1.22|>=1.21.1,<1.23|>=1.21.1,<1.24|>=1.21.1,<1.25|>=1.21.1,<1.26,!=1.25.0,!=1.25.1|>=1.21.1,<1.27']
anaconda-client -> requests[version='>=2.9.1'] -> urllib3[version='>=1.21.1,<1.22|>=1.21.1,<1.23|>=1.21.1,<1.24|>=1.21.1,<1.25|>=1.21.1,<1.26,!=1.25.0,!=1.25.1|>=1.21.1,<1.27']
conda-build -> requests -> urllib3[version='>=1.21.1,<1.22|>=1.21.1,<1.23|>=1.21.1,<1.24|>=1.21.1,<1.25|>=1.21.1,<1.26,!=1.25.0,!=1.25.1|>=1.21.1,<1.27']
pyega3 -> requests -> urllib3[version='>=1.21.1,<1.22|>=1.21.1,<1.23|>=1.21.1,<1.24|>=1.21.1,<1.25|>=1.21.1,<1.26,!=1.25.0,!=1.25.1|>=1.21.1,<1.27']
conda[version='>=4.9.2'] -> requests[version='>=2.18.4,<3'] -> urllib3[version='>=1.21.1,<1.22|>=1.21.1,<1.23|>=1.21.1,<1.24|>=1.21.1,<1.25|>=1.21.1,<1.26,!=1.25.0,!=1.25.1|>=1.21.1,<1.27']

Package psutil conflicts for:
conda-build -> psutil
pyega3 -> psutil

Package backports.functools_lru_cache conflicts for:
conda-build -> conda-verify -> backports.functools_lru_cache
bcftools -> matplotlib -> backports.functools_lru_cache

Package cloog conflicts for:
coreutils -> libgcc -> cloog==0.18.0
scipy -> libgcc -> cloog==0.18.0
bcftools -> libgcc -> cloog==0.18.0
bedops -> libgcc -> cloog==0.18.0

Package numpy conflicts for:
bcftools -> matplotlib -> numpy[version='1.10.*|1.11.*|>=1.14.6,<2.0a0']
scipy -> numpy[version='1.10.*|1.11.*|1.12.*|1.13.*|>=1.11|>=1.11.3,<2.0a0|>=1.14.6,<2.0a0|>=1.16.5,<2.0a0|>=1.16.6,<2.0a0|>=1.19.5,<2.0a0|>=1.19.4,<2.0a0|>=1.18.5,<2.0a0|>=1.19.2,<2.0a0|>=1.18.1,<2.0a0|>=1.9.3,<2.0a0|>=1.9|>=1.15.1,<2.0a0']

Package yaml conflicts for:
conda[version='>=4.9.2'] -> ruamel_yaml[version='>=0.11.14,<0.16'] -> yaml[version='>=0.1.7,<0.2.0a0|>=0.2.2,<0.3.0a0|>=0.2.5,<0.3.0a0']
anaconda-client -> pyyaml[version='>=3.12'] -> yaml[version='>=0.1.7,<0.2.0a0|>=0.2.2,<0.3.0a0|>=0.2.5,<0.3.0a0']
conda-build -> pyyaml -> yaml[version='>=0.1.7,<0.2.0a0|>=0.2.2,<0.3.0a0|>=0.2.5,<0.3.0a0']
conda -> ruamel_yaml[version='>=0.11.14,<0.16'] -> yaml[version='>=0.1.7,<0.2.0a0|>=0.2.2,<0.3.0a0|>=0.2.5,<0.3.0a0']

Package libblas conflicts for:
scipy -> libblas[version='>=3.8.0,<4.0a0']
scipy -> libcblas[version='>=3.8.0,<4.0a0'] -> libblas[version='3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0.*|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.8.0|3.9.0|3.9.0|3.9.0|3.9.0|3.9.0|3.9.0|3.9.0|3.9.0.*',build='4_blis|4_openblas|4_mkl|5_blis|5_openblas|6_blis|6_openblas|7_blis|7_openblas|7_mkl|8_blis|9_blis|9_mkl|11_openblas|11_mkl|12_blis|12_openblas|12_mkl|13_openblas|13_blis|15_mkl|15_openblas|19_mkl|0_openblas|1_openblas|2_blis|3_blis|4_blis|4_mkl|5_blis|5_openblas|6_blis|6_openblas|7_blis|7_openblas|7_mkl|6_mkl|5_mkl|4_openblas|3_openblas|2_openblas|1_blis|0_blis|21_mkl|20_mkl|18_mkl|17_openblas|16_mkl|16_blis|16_openblas|15_blis|14_mkl|14_blis|14_openblas|13_mkl|11_blis|10_mkl|10_openblas|10_blis|9_openblas|8_mkl|8_openblas|6_mkl|5_mkl']

Package conda conflicts for:
conda-build -> conda[version='>=4.1,<4.3|>=4.1|>=4.1,<4.4|>=4.3|>=4.5']
conda[version='>=4.9.2'] -> conda

Package libcurl conflicts for:
git -> libcurl[version='>=7.57.0,<8.0a0|>=7.58.0,<8.0a0|>=7.59.0,<8.0a0|>=7.60.0,<8.0a0|>=7.61.0,<8.0a0|>=7.61.1,<8.0a0|>=7.63.0,<8.0a0|>=7.65.3,<8.0a0']
git -> curl[version='>=7.71.1,<8.0a0'] -> libcurl[version='7.57.0|7.58.0|7.59.0|7.60.0|7.61.0|7.61.1|7.61.1|7.61.1|7.62.0|7.62.0|7.63.0|7.63.0|7.64.0|7.64.0|7.64.0|7.64.0|7.64.0|7.64.1|7.64.1|7.64.1|7.65.2|7.65.3|7.68.0|7.68.0|7.69.1|7.69.1|7.71.0|7.71.1|7.71.0|7.68.0|7.67.0|7.65.3|7.65.2|7.63.0|7.63.0|7.62.0',build='h1ad7b7a_0|h20c2e04_0|h20c2e04_0|h20c2e04_0|h20c2e04_1000|hbdb9355_2|h01ee5af_1002|hbdb9355_0|hbdb9355_0|h01ee5af_1000|h541490c_2|hda55be3_4|h20c2e04_0|h20c2e04_0|h20c2e04_0|h20c2e04_0|hf7181ac_1|hda55be3_0|hf7181ac_1|h20c2e04_0|h20c2e04_0|h20c2e04_1|hcdd3856_2|hcdd3856_5|hcdd3856_6|hcdd3856_8|hcdd3856_4|hcdd3856_3|hcdd3856_1|hcdd3856_0|hcdd3856_0|hf7181ac_0|hda55be3_0|hda55be3_0|hda55be3_0|h20c2e04_0|hf7181ac_5|h01ee5af_0|h20c2e04_2|h01ee5af_1000|h1ad7b7a_0|h1ad7b7a_0|h1ad7b7a_0|h1ad7b7a_0']

Package htslib conflicts for:
bedops -> samtools -> htslib[version='>=1.10,<1.11.0a0|>=1.10.2,<1.11.0a0|>=1.11,<1.12.0a0|>=1.9,<1.10.0a0']
bcftools -> htslib[version='>=1.10,<1.11.0a0|>=1.10.1,<1.11.0a0|>=1.11,<1.12.0a0|>=1.9,<1.10.0a0']
samtools=1.9 -> htslib[version='>=1.9,<1.10.0a0']

Package python-dateutil conflicts for:
anaconda-client -> python-dateutil[version='>=2.6.1']
bcftools -> matplotlib -> python-dateutil

Package gdbm conflicts for:
python=3.7 -> pypy3.7=7.3.3 -> gdbm[version='>=1.18,<1.19.0a0']
scipy -> pypy3.7[version='>=7.3.3'] -> gdbm[version='>=1.18,<1.19.0a0']
conda -> pypy3.6[version='>=7.3.2'] -> gdbm[version='>=1.18,<1.19.0a0']
conda[version='>=4.9.2'] -> pypy3.6[version='>=7.3.2'] -> gdbm[version='>=1.18,<1.19.0a0']
certifi -> pypy3.7[version='>=7.3.3'] -> gdbm[version='>=1.18,<1.19.0a0']
Note that strict channel priority may have removed packages required for satisfiability.

rdmorin assigned Lakshay-sethi Jan 11, 2021

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environment for salmon2counts fails to build #21

environment for salmon2counts fails to build #21

rdmorin commented Jan 11, 2021

Lakshay-sethi commented Jan 11, 2021

rdmorin commented Jan 11, 2021

Lakshay-sethi commented Jan 11, 2021

rdmorin commented Jan 11, 2021

Lakshay-sethi commented Jan 11, 2021 •

edited

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Kdreval commented Feb 1, 2021

Lakshay-sethi commented Feb 3, 2021 •

edited

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rdmorin commented Feb 3, 2021

rdmorin commented Feb 3, 2021

environment for salmon2counts fails to build #21

environment for salmon2counts fails to build #21

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rdmorin commented Jan 11, 2021

Lakshay-sethi commented Jan 11, 2021

rdmorin commented Jan 11, 2021

Lakshay-sethi commented Jan 11, 2021

rdmorin commented Jan 11, 2021

Lakshay-sethi commented Jan 11, 2021 • edited Loading

Kdreval commented Feb 1, 2021

Lakshay-sethi commented Feb 3, 2021 • edited Loading

rdmorin commented Feb 3, 2021

rdmorin commented Feb 3, 2021

Lakshay-sethi commented Jan 11, 2021 •

edited

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Lakshay-sethi commented Feb 3, 2021 •

edited

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