diff --git a/pkgdown.yml b/pkgdown.yml index 53a03492..45a50061 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -2,7 +2,7 @@ pandoc: 3.1.11 pkgdown: 2.1.1 pkgdown_sha: ~ articles: {} -last_built: 2024-09-20T14:19Z +last_built: 2024-10-07T20:12Z urls: reference: https://jravilab.github.io/MolEvolvR/reference article: https://jravilab.github.io/MolEvolvR/articles diff --git a/reference/acc2fa.html b/reference/acc2fa.html index 243c2b97..d54f807c 100644 --- a/reference/acc2fa.html +++ b/reference/acc2fa.html @@ -1,8 +1,6 @@ -acc2fa converts protein accession numbers to a fasta format. — acc2fa • MolEvolvRacc2fa — acc2fa • MolEvolvR Skip to contents @@ -31,22 +29,19 @@
-

acc2fa converts protein accession numbers to a fasta format.

- Source: R/CHANGED-pre-msa-tree.R, R/pre-msa-tree.R +

acc2fa

+ Source: R/pre-msa-tree.R
acc2fa.Rd
-

Resulting fasta file is written to the outpath.

-

acc2fa converts protein accession numbers to a fasta format. +

acc2fa converts protein accession numbers to a fasta format. Resulting fasta file is written to the outpath.

Usage

- 
acc2fa(accessions, outpath, plan = "sequential")
-
-acc2fa(accessions, outpath, plan = "sequential")
+ 
acc2fa(accessions, outpath, plan = "sequential")
@@ -78,11 +73,6 @@

ExamplesEntrez:accessions <- rep("ANY95992.1", 201) |> acc2fa(outpath = "entrez.fa") EBI:accessions <- c("P12345", "Q9UHC1", "O15530", "Q14624", "P0DTD1") |> acc2fa(outpath = "ebi.fa") } # } -if (FALSE) { # \dontrun{ -acc2fa(accessions = c("ACU53894.1", "APJ14606.1", "ABK37082.1"), outpath = "my_proteins.fasta") -Entrez:accessions <- rep("ANY95992.1", 201) |> acc2fa(outpath = "entrez.fa") -EBI:accessions <- c("P12345", "Q9UHC1", "O15530", "Q14624", "P0DTD1") |> acc2fa(outpath = "ebi.fa") -} # }