From 8076990ba933d05f84c4d395fe97acfe0cf2a148 Mon Sep 17 00:00:00 2001 From: Maroun Touma Date: Tue, 28 Jan 2025 07:38:50 -0500 Subject: [PATCH 1/3] aded quick patch disabling fcntl for windows Signed-off-by: Maroun Touma --- .../python/src/data_processing/utils/multilock.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/data-processing-lib/python/src/data_processing/utils/multilock.py b/data-processing-lib/python/src/data_processing/utils/multilock.py index 3507ddc7b..ad59f5e62 100644 --- a/data-processing-lib/python/src/data_processing/utils/multilock.py +++ b/data-processing-lib/python/src/data_processing/utils/multilock.py @@ -12,7 +12,8 @@ import abc import datetime -import fcntl +if platform.system() != 'Windows': + import fcntl import os import tempfile import threading @@ -98,7 +99,8 @@ def acquire(self, block=True, timeout=None): timeout = max(0, timeout) while not locked and (timeout is None or waited <= timeout): try: - fcntl.lockf(self.fd, fcntl.LOCK_EX | fcntl.LOCK_NB) + if platform.system() != 'Windows': + fcntl.lockf(self.fd, fcntl.LOCK_EX | fcntl.LOCK_NB) locked = True except Exception as exc: # Only get here if lock could not be acquired From 5c67317b092198dea9567a7d8ff846c3b22e8e4d Mon Sep 17 00:00:00 2001 From: Maroun Touma Date: Tue, 28 Jan 2025 08:47:53 -0500 Subject: [PATCH 2/3] added missing import Signed-off-by: Maroun Touma --- .../python/src/data_processing/utils/multilock.py | 1 + 1 file changed, 1 insertion(+) diff --git a/data-processing-lib/python/src/data_processing/utils/multilock.py b/data-processing-lib/python/src/data_processing/utils/multilock.py index ad59f5e62..3ad10ed68 100644 --- a/data-processing-lib/python/src/data_processing/utils/multilock.py +++ b/data-processing-lib/python/src/data_processing/utils/multilock.py @@ -12,6 +12,7 @@ import abc import datetime +import platform if platform.system() != 'Windows': import fcntl import os From 874ad6eb719c6291c28795c70de8fe3eecd2dab1 Mon Sep 17 00:00:00 2001 From: Maroun Touma Date: Tue, 28 Jan 2025 14:32:24 -0500 Subject: [PATCH 3/3] Added notebooks used for testing Signed-off-by: Maroun Touma --- transforms/transforms-1.0-lang-Windows.ipynb | 4337 +++++++++++++++++ .../transforms-1.0-lang-ray-Windows.ipynb | 4321 ++++++++++++++++ 2 files changed, 8658 insertions(+) create mode 100644 transforms/transforms-1.0-lang-Windows.ipynb create mode 100644 transforms/transforms-1.0-lang-ray-Windows.ipynb diff --git a/transforms/transforms-1.0-lang-Windows.ipynb b/transforms/transforms-1.0-lang-Windows.ipynb new file mode 100644 index 000000000..222315767 --- /dev/null +++ b/transforms/transforms-1.0-lang-Windows.ipynb @@ -0,0 +1,4337 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "afd55886-5f5b-4794-838e-ef8179fb0394", + "metadata": { + "id": "afd55886-5f5b-4794-838e-ef8179fb0394" + }, + "source": [ + "##### **** These pip install need to be adapted to use the appropriate release level. Currently used for testing alpha release of transforms 1.0" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "4c45c3c6-e4d7-4e61-8de6-32d61f2ce695", + "metadata": { + "collapsed": true, + "id": "4c45c3c6-e4d7-4e61-8de6-32d61f2ce695", + "jupyter": { + "outputs_hidden": true + } + }, + "outputs": [], + "source": [ + "%%capture\n", + "!pip install data-prep-toolkit==0.2.3.post1\n", + "!pip install \"data-prep-toolkit-transforms[language]\"\n", + "!pip install fasttext-wheel\n", + "import pyarrow.parquet as pq\n", + "import pandas as pd" + ] + }, + { + "cell_type": "markdown", + "id": "c276c60e", + "metadata": { + "id": "c276c60e" + }, + "source": [ + "Get sample PDF file" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "c2a12abc-9460-4e45-8961-873b48a9ab19", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "c2a12abc-9460-4e45-8961-873b48a9ab19", + "outputId": "69b532bc-0238-43c2-eb17-b9b2345f2139" + }, + "outputs": [], + "source": [ + "%%capture\n", + "import urllib.request, os\n", + "os.mkdir(\"files-web2parquet\")\n", + "urllib.request.urlretrieve(\"https://arxiv.org/pdf/2408.09869\", \n", + " \"files-web2parquet/2408.09869.pdf\")" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "c3df5adf-4717-4a03-864d-9151cd3f134b", + "metadata": { + "id": "c3df5adf-4717-4a03-864d-9151cd3f134b" + }, + "outputs": [], + "source": [ + "##### **** The specified downloads folder will include the downloaded file(s).\n", + "#import glob\n", + "#glob.glob(\"files-web2parquet/*\")" + ] + }, + { + "cell_type": "markdown", + "id": "bd71fe8a", + "metadata": { + "id": "bd71fe8a" + }, + "source": [ + "Configure and run Pdf2Parquet" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "7276fe84-6512-4605-ab65-747351e13a7c", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 867, + "referenced_widgets": [ + "9a4bfabd0a05430d8f54fb5e63fd56c4", + "14b6a6d4c6034bec9d7754eeca9e23b7", + "8a893b05558c48fc837506ca5c6e6e70", + "b8ee8424f4b84e38a6addb5889e30a08", + "9adc89a8a83849e6aed03688ae05090e", + "6250d8d7249845afb26ecf406c230566", + "30b1dc1f180042b59b41c2709a9eac31", + "0e0e585b749946b7a4b67ebeb199da6e", + "78ed14fabfe44cf7b45e12f7c901fb21", + "84c680cd48594c42936b45990aa5c147", + "480662ab5bc54e62aa0927c7a0b73cf6", + "916beecc64044b11bf7611c62295e8c1", + "2da4b1af645444eeb1cce13ecf561d71", + "2401be73e731477186fd27a13c7f2a02", + "c8496be04511450eaa6823880d449473", + "8d73bf10108b4384bd9d7c4aa5cfd78d", + "d9b43fc022bf4df4b38db39f570f21c3", + "b9dcf61bf2ec4a9dae55df96cead9cc1", + "85ce8bc25277424b8c8ccaa6297c469f", + "d13f9a942b084aecb538c13af1f60d0a", + "cb7bc1b033ec432d8f4af74db1d1a812", + "647f492ea19544e992888c9d874f3648", + "db06908ad640418c92c39e2cab49b573", + "00d055d4fa904058ad5d5129eaef9092", + "4114ce34805d49f295cbea53054d3c2d", + "1f9770b240044f3a9584fd37cfe60293", + "a13727d6dbfa4615a0d451ea99e55c8f", + "0ffb2933bd174e07ac01a370eb7e876f", + "c87bf56377344db6829ac9a4447e4390", + "2b488caf87c447709241e6793a8f9a3a", + "b49f8c5ed8784781bbea40e4a41e6bbe", + "d55b6f4199c34e7d94e566636893032f", + "b357a46a79d440a29488c6747ee5298b", + "ec222e4e752148449c4fb47320d9eae6", + "371aec828d594c78ac39d65b85a82328", + "dd1dd722d5e04f8eb2fe7561a49daf25", + "6258e68da1d6448e85baf6998182eb89", + "9570d3413efd44d5bb5cde08a7dd865b", + "62faaf75305a4e71bf720f9420733fba", + "5621360c3f244156b214fbb60b4917fe", + "b64208bb4f5b4428a2bae6bfee7d46b9", + "d49fc8a423c4427e8d8b22ec4f1f0adb", + "d76f034fdb784ffdb5211c92fe61a0dc", + "ecdcd95865a84cb883e3cac5ed2bb353", + "58a95bd07fd54d72926d3d0282cce0b3", + "aaa044fc904f402dadcc7fcb52a33835", + "cc35407dfcdd46fb90f0366849e97df0", + "5906e08a0e3a4ef982eee0e042d2fb1a", + "4cc920f10440440baf86d7109310fd5b", + "a55cce467e4346e78c04941b0775fe37", + "64ade6e5680f4eb1b8017b9b79a5ccd7", + "096ab4569a99482c8e07bf67dd2ef933", + "4b5e21eca6d04beda3cfd53a391abe73", + "da9b4beb955647a2b26057510587c88e", + "1770b01e4609408ea69777afa7fd3a4d", + "719ed6a2f8d24cbe9c63f21b94e59e29", + "db418954cb3345a29811965469bc9b4d", + "22d73a7be31f412ea3e3fdaa073b499b", + "a5550dc69a634d3cbfadf0a7b9eae220", + "7a0c8a3325bd490cb47f22c06ffcfe3d", + "a7570a8192ec4c8ea8863c6cd9498dea", + "ff953f19b38b4026b09658caaac4637c", + "d1607da600824c0a85f87238869e77eb", + "6a7df409091e49a397f2545b07aab176", + "84232074147d42af9a800d69248ef260", + "6acd1da8b11c4d6182b95451dba7727f", + "154b3bc69d284c0b83730c6ae23e858f", + "c5ce4d649e73422482885b3bb02bb2bf", + "6fc2726bc04848b6b47e528758e74dda", + "965239d88cd642a89a4098e43e29cc57", + "161a67ccca564339ae6f9b8424208474", + "60c1eaa5b2b245cca35df6ad57a49f5f", + "f55e2d4cdc664b84a75345d8086297ec", + "75fd14d9ddbd4706937ba03c0f710551", + "d44a817d280b47f2af40b53dfd9c7a7e", + "415d419dcc104199829fee3e94a0b142", + "f5cc839d708d41749484f5c2ed6739de", + "b2dc7a65e41f45518e1470e22393e892", + "59476dbc19674b449f56982cf169f09f", + "6db1326b35c643bd91aae5b8c02fb766", + "e6c9075820214d4f9dd3f4cb20d47eee", + "e6de6802cfdc4b4f80cdbffa9d278ca6", + "ed66614fc14042e0b67a577c48800cc6", + "11b36bfbd94144149bd18bbc610faa34", + "49abd83a0344478893a1ff1a36a04d26", + "6c32ea2e266d4ac5a1f94f3fb43b4ce6", + "0d107ae868a6438b9a0163c9f7b6c44e", + "40b41e8fd05f4dd395bd88ea4ca3da23", + "e21412fc43884ba49793cd95bbb203e9", + "35b4959cb2714441beb2e4c2964718a0", + "b081df757625474b9ce5a90753028b0e", + "26eeaf09ee164e3ab59bc0096c6ca997", + "0660e407748a4a049179209aeaf332a4", + "bd3614950fa542dca518bee4df2055e8", + "fbbc8c35b1694b168fe5fe6bd8b58227", + "bb7322d6ab83463fb20db2e1315f264e", + "eedbb834b06f4a1f99bded2e0fb242b1", + "793e134e6d7946608096fdceab2b8a7e", + "ba213d3c3e994134b1fc549200d68257", + "2eae1c0a1d9145998be1b5e2907c3ba7", + "a7b97e0906c14c7ea9a1e2344bb49493", + "69f0b611370943b79f71e015ac87fbd6", + "b6e1df49c6d14b988f9f9a221b15851c", + "9bfa6eb375e7496c9a1099156a9d910e", + "5c3d172fce584abf93a7fba0925c4d73", + "46b268453a2147a1965f92dbeb8c2b84", + "53e1988c9b154c85a0e7b101b65c0a00", + "b9fbaffde58748f289004756314bef4b", + "fa5f571281c548a9bdb995973a88a378", + "6b4f613cf5ff402399da78392122c439" + ] + }, + "id": "7276fe84-6512-4605-ab65-747351e13a7c", + "outputId": "0481ad6a-8582-4a1b-ffbe-afe0cff7c0e3" + }, + "outputs": [], + "source": [ + "from dpk_pdf2parquet.transform_python import Pdf2Parquet\n", + "Pdf2Parquet(input_folder= \"files-web2parquet\",\n", + " output_folder= \"files-pdf2parquet\",\n", + " data_files_to_use=['.pdf'],\n", + " pdf2parquet_contents_type='text/markdown').transform()" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "fef6667e-71ed-4054-9382-55c6bb3fda70", + "metadata": { + "id": "fef6667e-71ed-4054-9382-55c6bb3fda70" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from pdf2parquet, run the code below\n", + "#table = pq.read_table('files-pdf2parquet/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "54cba5c4", + "metadata": { + "id": "54cba5c4" + }, + "source": [ + "Configure and Run DocChunk" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "fe8bf1bc", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "fe8bf1bc", + "outputId": "994bb21e-d0ea-4fb0-f159-bd37748f4e12" + }, + "outputs": [], + "source": [ + "%%capture\n", + "from dpk_doc_chunk.transform_python import DocChunk\n", + "DocChunk(input_folder='files-pdf2parquet',\n", + " output_folder='files-doc-chunk',\n", + " doc_chunk_chunking_type= \"li_markdown\").transform()" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "9d4f7bfc", + "metadata": { + "id": "9d4f7bfc" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from doc-chunk, run the code below\n", + "#table = pq.read_table('files-doc-chunk/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "349cf6ff", + "metadata": { + "id": "349cf6ff" + }, + "source": [ + "Configure and Run Exact dedup" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "38480cd5", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "38480cd5", + "outputId": "a65248a1-26ba-4cd9-9d7e-592d691d9e15" + }, + "outputs": [], + "source": [ + "from dpk_ededup.transform_python import Ededup\n", + "Ededup(input_folder=\"files-doc-chunk\",\n", + " output_folder=\"files-ededup\",\n", + " ededup_doc_column=\"contents\",\n", + " ededup_doc_id_column=\"document_id\").transform()" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "id": "27e36a8e", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 1000 + }, + "id": "27e36a8e", + "outputId": "98e4afdc-7cd3-4afa-a59b-065498e2f29b" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from eDedup, run the code below\n", + "#table = pq.read_table('files-ededup/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "318bc520", + "metadata": { + "id": "318bc520" + }, + "source": [ + "Configure and run Lang Id" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "ad27a462", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 511, + "referenced_widgets": [ + "7d4e90bd65e3453a9e98135530572b06", + "9be1cd4270b947a4b9668d6930bf0f69", + "49580a34ef6248d589c501071984a88c", + "f4b2cbcc8d6e478d9d455432e67b150b", + "f8642608f3ed4e029c301299c7f6697f", + "0fd4758f111645378c859f53dd1ff8b7", + "eaf03800d0ef417996025e92daa8022d", + "55d89ee964174d82a51c536a9039f76e", + "1117ab41e578444c91318a9f160cd13b", + "16b34610fa374cbda79314c3010ff934", + "4f79a3e9ec8249c38af0aa3055fcdbde" + ] + }, + "id": "ad27a462", + "outputId": "c43f3823-3608-4be3-a267-e5a82e860bf8" + }, + "outputs": [], + "source": [ + "from dpk_lang_id.transform_python import LangId\n", + "LangId(input_folder= \"files-ededup\",\n", + " output_folder= \"files-langId\",\n", + " lang_id_model_credential= \"PUT YOUR OWN HUGGINGFACE CREDENTIAL\",\n", + " lang_id_model_kind= \"fasttext\",\n", + " lang_id_model_url= \"facebook/fasttext-language-identification\",\n", + " lang_id_content_column_name= \"contents\").transform()" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "id": "c35cab2e", + "metadata": { + "id": "c35cab2e" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from langId, run the code below\n", + "#table = pq.read_table('files-langId/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "a968dbb4", + "metadata": { + "id": "a968dbb4" + }, + "source": [ + "Configure and run Doc Quality" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "4e84ce78", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "4e84ce78", + "outputId": "e288c3fc-b77a-4dba-f270-0d2e08eaa60b" + }, + "outputs": [], + "source": [ + "%%capture\n", + "from dpk_doc_quality.transform_python import DocQuality\n", + "DocQuality(input_folder='files-doc-chunk',\n", + " output_folder= 'files-doc-quality',\n", + " docq_text_lang = \"en\",\n", + " docq_doc_content_column =\"contents\").transform()" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "id": "d98b854f", + "metadata": { + "id": "d98b854f" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from Doc Quality, run the code below\n", + "#table = pq.read_table('files-doc-quality/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "a6230859", + "metadata": { + "id": "a6230859" + }, + "source": [ + "Run tokenization" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "7b454872", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 411 + }, + "id": "7b454872", + "outputId": "2e5223fb-918a-4d57-ea90-ee395e6afc7f" + }, + "outputs": [], + "source": [ + "%%capture\n", + "from dpk_tokenization.transform_python import Tokenization\n", + "Tokenization(input_folder= \"files-doc-quality\",\n", + " output_folder= \"files-tokenization\",\n", + " tkn_tokenizer= \"hf-internal-testing/llama-tokenizer\",\n", + " tkn_chunk_size= 20_000).transform()" + ] + }, + { + "cell_type": "code", + "execution_count": 15, + "id": "fd9bf9f3-3c59-4efb-9d7e-0201d6d8d783", + "metadata": { + "id": "fd9bf9f3-3c59-4efb-9d7e-0201d6d8d783" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from Doc Quality, run the code below\n", + "#table = pq.read_table('files-tokenization/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "pXenGEKtfhBo", + "metadata": { + "id": "pXenGEKtfhBo" + }, + "source": [ + "Configure and run DocId" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "gl-oiZybfmBf", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "gl-oiZybfmBf", + "outputId": "191e9f7f-4de6-408c-902d-c4fe8c51516e" + }, + "outputs": [], + "source": [ + "from dpk_doc_id.transform_python import DocID\n", + "DocID(input_folder= \"files-doc-chunk\",\n", + " output_folder= \"files-doc-id\",\n", + " doc_id_doc_column= \"contents\",\n", + " doc_id_hash_column= \"document_id\",\n", + " doc_id_int_column= \"int_id_column\",\n", + " doc_id_start_id= 5).transform()\n" + ] + }, + { + "cell_type": "code", + "execution_count": 17, + "id": "Zm7IfuVng38C", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 1000 + }, + "id": "Zm7IfuVng38C", + "outputId": "2a2e4240-4c18-4758-daa8-d33a0e84f2f1" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from Doc Quality, run the code below\n", + "#table = pq.read_table('files-doc-id/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "f379df31-76bc-4815-afae-ec542c788bd6", + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "01dff335-e233-497e-89a1-529f7f902d0c", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "colab": { + "provenance": [] + }, + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.8" + }, + "widgets": { + "application/vnd.jupyter.widget-state+json": { + "00d055d4fa904058ad5d5129eaef9092": { + "model_module": "@jupyter-widgets/controls", 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+ "state": { + "_model_module": "@jupyter-widgets/controls", + "_model_module_version": "1.5.0", + "_model_name": "DescriptionStyleModel", + "_view_count": null, + "_view_module": "@jupyter-widgets/base", + "_view_module_version": "1.2.0", + "_view_name": "StyleView", + "description_width": "" + } + } + } + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/transforms/transforms-1.0-lang-ray-Windows.ipynb b/transforms/transforms-1.0-lang-ray-Windows.ipynb new file mode 100644 index 000000000..a9bcf6491 --- /dev/null +++ b/transforms/transforms-1.0-lang-ray-Windows.ipynb @@ -0,0 +1,4321 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "afd55886-5f5b-4794-838e-ef8179fb0394", + "metadata": { + "id": "afd55886-5f5b-4794-838e-ef8179fb0394" + }, + "source": [ + "##### **** These pip install need to be adapted to use the appropriate release level. Currently used for testing alpha release of transforms 1.0" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "4c45c3c6-e4d7-4e61-8de6-32d61f2ce695", + "metadata": { + "id": "4c45c3c6-e4d7-4e61-8de6-32d61f2ce695", + "scrolled": true + }, + "outputs": [], + "source": [ + "%%capture\n", + "!pip install \"data-prep-toolkit[ray]==0.2.3.post1\"\n", + "!pip install \"data-prep-toolkit-transforms[language]\"\n", + "!pip install fasttext-wheel\n", + "import pyarrow.parquet as pq\n", + "import pandas as pd" + ] + }, + { + "cell_type": "markdown", + "id": "c276c60e", + "metadata": { + "id": "c276c60e" + }, + "source": [ + "Configure and run web2parquet" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "b6c89ac7-6824-4d99-8120-7d5b150bd683", + "metadata": { + "id": "b6c89ac7-6824-4d99-8120-7d5b150bd683" + }, + "outputs": [], + "source": [ + "%%capture\n", + "import urllib.request, os\n", + "os.mkdir(\"files-web2parquet\", exist_ok=True)\n", + "urllib.request.urlretrieve(\"https://arxiv.org/pdf/2408.09869\", \n", + " \"files-web2parquet/2408.09869.pdf\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "c3df5adf-4717-4a03-864d-9151cd3f134b", + "metadata": { + "id": "c3df5adf-4717-4a03-864d-9151cd3f134b" + }, + "outputs": [], + "source": [ + "##### **** The specified downloads folder will include the downloaded file(s).\n", + "#import glob\n", + "#glob.glob(\"files-web2parquet/*\")" + ] + }, + { + "cell_type": "markdown", + "id": "bd71fe8a", + "metadata": { + "id": "bd71fe8a" + }, + "source": [ + "Configure and run Pdf2Parquet" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "7276fe84-6512-4605-ab65-747351e13a7c", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 867, + "referenced_widgets": [ + "9a4bfabd0a05430d8f54fb5e63fd56c4", + "14b6a6d4c6034bec9d7754eeca9e23b7", + "8a893b05558c48fc837506ca5c6e6e70", + "b8ee8424f4b84e38a6addb5889e30a08", + 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"ed66614fc14042e0b67a577c48800cc6", + "11b36bfbd94144149bd18bbc610faa34", + "49abd83a0344478893a1ff1a36a04d26", + "6c32ea2e266d4ac5a1f94f3fb43b4ce6", + "0d107ae868a6438b9a0163c9f7b6c44e", + "40b41e8fd05f4dd395bd88ea4ca3da23", + "e21412fc43884ba49793cd95bbb203e9", + "35b4959cb2714441beb2e4c2964718a0", + "b081df757625474b9ce5a90753028b0e", + "26eeaf09ee164e3ab59bc0096c6ca997", + "0660e407748a4a049179209aeaf332a4", + "bd3614950fa542dca518bee4df2055e8", + "fbbc8c35b1694b168fe5fe6bd8b58227", + "bb7322d6ab83463fb20db2e1315f264e", + "eedbb834b06f4a1f99bded2e0fb242b1", + "793e134e6d7946608096fdceab2b8a7e", + "ba213d3c3e994134b1fc549200d68257", + "2eae1c0a1d9145998be1b5e2907c3ba7", + "a7b97e0906c14c7ea9a1e2344bb49493", + "69f0b611370943b79f71e015ac87fbd6", + "b6e1df49c6d14b988f9f9a221b15851c", + "9bfa6eb375e7496c9a1099156a9d910e", + "5c3d172fce584abf93a7fba0925c4d73", + "46b268453a2147a1965f92dbeb8c2b84", + "53e1988c9b154c85a0e7b101b65c0a00", + "b9fbaffde58748f289004756314bef4b", + "fa5f571281c548a9bdb995973a88a378", + "6b4f613cf5ff402399da78392122c439" + ] + }, + "id": "7276fe84-6512-4605-ab65-747351e13a7c", + "outputId": "0481ad6a-8582-4a1b-ffbe-afe0cff7c0e3" + }, + "outputs": [], + "source": [ + "from dpk_pdf2parquet.ray.transform import Pdf2Parquet\n", + "Pdf2Parquet(input_folder= \"files-web2parquet\",\n", + " output_folder= \"files-pdf2parquet\",\n", + " data_files_to_use=['.pdf'],\n", + " run_locally= True,\n", + " pdf2parquet_contents_type='text/markdown').transform()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "fef6667e-71ed-4054-9382-55c6bb3fda70", + "metadata": { + "id": "fef6667e-71ed-4054-9382-55c6bb3fda70" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from pdf2parquet, run the code below\n", + "#table = pq.read_table('files-pdf2parquet/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "54cba5c4", + "metadata": { + "id": "54cba5c4" + }, + "source": [ + "Configure and Run DocChunk" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "fe8bf1bc", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "fe8bf1bc", + "outputId": "994bb21e-d0ea-4fb0-f159-bd37748f4e12" + }, + "outputs": [], + "source": [ + "%%capture\n", + "from dpk_doc_chunk.ray.transform import DocChunk\n", + "DocChunk(input_folder='files-pdf2parquet',\n", + " output_folder='files-doc-chunk',\n", + " run_locally= True,\n", + " doc_chunk_chunking_type= \"li_markdown\").transform()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "9d4f7bfc", + "metadata": { + "id": "9d4f7bfc" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from doc-chunk, run the code below\n", + "#table = pq.read_table('files-doc-chunk/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "349cf6ff", + "metadata": { + "id": "349cf6ff" + }, + "source": [ + "Configure and Run Exact dedup" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "38480cd5", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "38480cd5", + "outputId": "a65248a1-26ba-4cd9-9d7e-592d691d9e15" + }, + "outputs": [], + "source": [ + "from dpk_ededup.ray.transform import Ededup\n", + "Ededup(input_folder=\"files-doc-chunk\",\n", + " output_folder=\"files-ededup\",\n", + " ededup_doc_column=\"contents\",\n", + " run_locally= True,\n", + " ededup_num_hashes= 2,\n", + " ededup_doc_id_column=\"document_id\").transform()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "27e36a8e", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 1000 + }, + "id": "27e36a8e", + "outputId": "98e4afdc-7cd3-4afa-a59b-065498e2f29b" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from eDedup, run the code below\n", + "#table = pq.read_table('files-ededup/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "318bc520", + "metadata": { + "id": "318bc520" + }, + "source": [ + "Configure and run Lang Id" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "ad27a462", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 511, + "referenced_widgets": [ + "7d4e90bd65e3453a9e98135530572b06", + "9be1cd4270b947a4b9668d6930bf0f69", + "49580a34ef6248d589c501071984a88c", + "f4b2cbcc8d6e478d9d455432e67b150b", + "f8642608f3ed4e029c301299c7f6697f", + "0fd4758f111645378c859f53dd1ff8b7", + "eaf03800d0ef417996025e92daa8022d", + "55d89ee964174d82a51c536a9039f76e", + "1117ab41e578444c91318a9f160cd13b", + "16b34610fa374cbda79314c3010ff934", + "4f79a3e9ec8249c38af0aa3055fcdbde" + ] + }, + "id": "ad27a462", + "outputId": "c43f3823-3608-4be3-a267-e5a82e860bf8" + }, + "outputs": [], + "source": [ + "from dpk_lang_id.ray.transform import LangId\n", + "LangId(input_folder= \"files-ededup\",\n", + " output_folder= \"files-langId\",\n", + " lang_id_model_credential= \"PUT YOUR OWN HUGGINGFACE CREDENTIAL\",\n", + " lang_id_model_kind= \"fasttext\",\n", + " lang_id_model_url= \"facebook/fasttext-language-identification\",\n", + " run_locally= True,\n", + " lang_id_content_column_name= \"contents\").transform()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "c35cab2e", + "metadata": { + "id": "c35cab2e" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from langId, run the code below\n", + "#table = pq.read_table('files-langId/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "a968dbb4", + "metadata": { + "id": "a968dbb4" + }, + "source": [ + "Configure and run Doc Quality" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "4e84ce78", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "4e84ce78", + "outputId": "e288c3fc-b77a-4dba-f270-0d2e08eaa60b" + }, + "outputs": [], + "source": [ + "%%capture\n", + "from dpk_doc_quality.ray.transform import DocQuality\n", + "DocQuality(input_folder='files-doc-chunk',\n", + " output_folder= 'files-doc-quality',\n", + " docq_text_lang = \"en\",\n", + " run_locally= True,\n", + " docq_doc_content_column =\"contents\").transform()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "d98b854f", + "metadata": { + "id": "d98b854f" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from Doc Quality, run the code below\n", + "#table = pq.read_table('files-doc-quality/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "a6230859", + "metadata": { + "id": "a6230859" + }, + "source": [ + "Run tokenization" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "7b454872", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 411 + }, + "id": "7b454872", + "outputId": "2e5223fb-918a-4d57-ea90-ee395e6afc7f" + }, + "outputs": [], + "source": [ + "%%capture\n", + "from dpk_tokenization.ray.transform import Tokenization\n", + "Tokenization(input_folder= \"files-doc-quality\",\n", + " output_folder= \"files-tokenization\",\n", + " tkn_tokenizer= \"hf-internal-testing/llama-tokenizer\",\n", + " run_locally= True,\n", + " tkn_chunk_size= 20_000).transform()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "fd9bf9f3-3c59-4efb-9d7e-0201d6d8d783", + "metadata": { + "id": "fd9bf9f3-3c59-4efb-9d7e-0201d6d8d783" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from Doc Quality, run the code below\n", + "#table = pq.read_table('files-tokenization/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + }, + { + "cell_type": "markdown", + "id": "pXenGEKtfhBo", + "metadata": { + "id": "pXenGEKtfhBo" + }, + "source": [ + "Configure and run DocId" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "gl-oiZybfmBf", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "gl-oiZybfmBf", + "outputId": "191e9f7f-4de6-408c-902d-c4fe8c51516e" + }, + "outputs": [], + "source": [ + "from dpk_doc_id.transform_python import DocID\n", + "DocID(input_folder= \"files-doc-chunk\",\n", + " output_folder= \"files-doc-id\",\n", + " doc_id_doc_column= \"contents\",\n", + " doc_id_hash_column= \"document_id\",\n", + " doc_id_int_column= \"int_id_column\",\n", + " doc_id_start_id= 5).transform()\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "Zm7IfuVng38C", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 1000 + }, + "id": "Zm7IfuVng38C", + "outputId": "2a2e4240-4c18-4758-daa8-d33a0e84f2f1" + }, + "outputs": [], + "source": [ + "##### **** To explote the output from Doc Quality, run the code below\n", + "#table = pq.read_table('files-doc-id/arxiv_org_2408.09869v5.pdf_application.parquet')\n", + "#table.to_pandas()" + ] + } + ], + "metadata": { + "colab": { + "provenance": [] + }, + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.8" + }, + "widgets": { + "application/vnd.jupyter.widget-state+json": { + "00d055d4fa904058ad5d5129eaef9092": { + "model_module": "@jupyter-widgets/controls", + "model_module_version": "1.5.0", + "model_name": "HTMLModel", + "state": { + "_dom_classes": [], + "_model_module": "@jupyter-widgets/controls", + "_model_module_version": "1.5.0", + "_model_name": "HTMLModel", + "_view_count": null, + 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