From a50c79a794944445ecec420e88d05620d89eb829 Mon Sep 17 00:00:00 2001
From: Joshua Klein <mobiusklein@gmail.com>
Date: Mon, 11 Nov 2024 01:31:07 -0500
Subject: [PATCH] Update OWL file (#358)

Co-authored-by: GitHub <noreply@github.com>
---
 psi-ms.owl | 36 +++++++++++++++++++++++++++++++++---
 1 file changed, 33 insertions(+), 3 deletions(-)

diff --git a/psi-ms.owl b/psi-ms.owl
index bc3aa87..2b2c86e 100644
--- a/psi-ms.owl
+++ b/psi-ms.owl
@@ -10,13 +10,13 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ms.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.185/ms.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.186/ms.owl"/>
         <oboInOwl:NamespaceIdRule>* MS:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:NamespaceIdRule>* PEFF:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
-        <oboInOwl:date>31:10:2024 10:20</oboInOwl:date>
+        <oboInOwl:date>10:11:2024 08:30</oboInOwl:date>
         <oboInOwl:default-namespace>MS</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
-        <oboInOwl:saved-by>Nithu Sara John</oboInOwl:saved-by>
+        <oboInOwl:saved-by>Yasset Perez-Riverol</oboInOwl:saved-by>
         <rdfs:comment>For any queries contact psidev-ms-vocab@lists.sourceforge.net</rdfs:comment>
         <rdfs:comment>This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.</rdfs:comment>
         <rdfs:comment>To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.</rdfs:comment>
@@ -71696,6 +71696,36 @@
     
 
 
+    <!-- http://purl.obolibrary.org/obo/MS_1003433 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003433">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1001143"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#has_order"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/MS_1002108"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#has_value_type"/>
+                <owl:someValuesFrom rdf:resource="http://www.w3.org/2001/XMLSchema#double"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115>Score difference to the second best identified peptide with a different amino acid sequence.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace>MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id>MS:1003433</oboInOwl:id>
+        <rdfs:label>Andromeda:delta score</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003433"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>Score difference to the second best identified peptide with a different amino acid sequence.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>PSI:PI</oboInOwl:hasDbXref>
+    </owl:Axiom>
+    
+
+
     <!-- http://purl.obolibrary.org/obo/MS_4000000 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_4000000">