From 9053a23f7da6d185f21f113e8ca6a8e7bef4dd61 Mon Sep 17 00:00:00 2001 From: Joshua Klein Date: Fri, 26 Jul 2024 11:23:15 -0400 Subject: [PATCH] Restore deleted STATO references to evaluate validation without import (#299) * feature: Restore deleted STATO references to evaluate validation without import * version bump * Version bump * Update psi-ms.obo --- psi-ms.obo | 56 ++++++++++++++++++++++++++++++++++++++++++++++++++++-- 1 file changed, 54 insertions(+), 2 deletions(-) diff --git a/psi-ms.obo b/psi-ms.obo index 6dbcc6e..f83fd5d 100644 --- a/psi-ms.obo +++ b/psi-ms.obo @@ -1,7 +1,7 @@ format-version: 1.2 -data-version: 4.1.165 +data-version: 4.1.166 date: 19:07:2024 07:15 -saved-by: Wout Bittremieux +saved-by: Joshua Klein auto-generated-by: OBO-Edit 2.3.1 default-namespace: MS namespace-id-rule: * MS:$sequence(7,0,9999999)$ @@ -22701,6 +22701,8 @@ relationship: has_metric_category MS:4000012 ! single run based metric relationship: has_metric_category MS:4000018 ! XIC metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_value_concept MS:1000086 ! full width at half-maximum +relationship: has_value_concept STATO:0000291 ! quantile +relationship: has_units UO:0000010 ! second [Term] id: MS:4000052 @@ -22714,6 +22716,8 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000012 ! single run based metric relationship: has_metric_category MS:4000018 ! XIC metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000105 ! log signal intensity ratio +relationship: has_value_concept UO:0000191 ! fraction [Term] id: MS:4000053 @@ -22794,6 +22798,7 @@ relationship: has_metric_category MS:4000012 ! single run based metric relationship: has_metric_category MS:4000017 ! chromatogram metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000105 ! log signal intensity ratio [Term] id: MS:4000058 @@ -22809,6 +22814,7 @@ relationship: has_metric_category MS:4000012 ! single run based metric relationship: has_metric_category MS:4000017 ! chromatogram metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000105 ! log signal intensity ratio [Term] id: MS:4000059 @@ -22850,6 +22856,8 @@ relationship: has_metric_category MS:4000012 ! single run based metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:int ! The allowed value-type for this CV term relationship: has_value_concept NCIT:C45781 ! Density +relationship: has_value_concept STATO:0000291 ! quantile +relationship: has_units UO:0000189 ! count unit [Term] id: MS:4000062 @@ -22865,6 +22873,7 @@ relationship: has_metric_category MS:4000012 ! single run based metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:int ! The allowed value-type for this CV term relationship: has_value_concept NCIT:C45781 ! Density +relationship: has_value_concept STATO:0000291 ! quantile relationship: has_units UO:0000189 ! count unit [Term] @@ -22964,6 +22973,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000012 ! single run based metric relationship: has_metric_category MS:4000019 ! MS metric relationship: has_units MS:1000040 ! m/z +relationship: has_value_concept STATO:0000035 ! range [Term] id: MS:4000070 @@ -22975,6 +22985,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000012 ! single run based metric relationship: has_metric_category MS:4000016 ! retention time metric relationship: has_units UO:0000010 ! second +relationship: has_value_concept STATO:0000035 ! range [Term] id: MS:4000071 @@ -23374,6 +23385,7 @@ is_a: MS:4000003 ! single value relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000109 @@ -23384,6 +23396,7 @@ is_a: MS:4000003 ! single value relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000110 @@ -23394,6 +23407,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000111 @@ -23404,6 +23418,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000112 @@ -23414,6 +23429,7 @@ is_a: MS:4000003 ! single value relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000113 @@ -23424,6 +23440,7 @@ is_a: MS:4000003 ! single value relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000114 @@ -23434,6 +23451,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000115 @@ -23444,6 +23462,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000116 @@ -23455,6 +23474,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000291 ! quantile [Term] id: MS:4000117 @@ -23466,6 +23486,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000118 @@ -23477,6 +23498,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000119 @@ -23488,6 +23510,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000120 @@ -23499,6 +23522,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000121 @@ -23509,6 +23533,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000291 ! quantile [Term] id: MS:4000122 @@ -23519,6 +23544,7 @@ is_a: MS:4000003 ! single value relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000123 @@ -23529,6 +23555,7 @@ is_a: MS:4000003 ! single value relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000124 @@ -23539,6 +23566,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000125 @@ -23549,6 +23577,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000126 @@ -23559,6 +23588,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000291 ! quantile [Term] id: MS:4000127 @@ -23569,6 +23599,7 @@ is_a: MS:4000003 ! single value relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000128 @@ -23579,6 +23610,7 @@ is_a: MS:4000003 ! single value relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000129 @@ -23589,6 +23621,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000130 @@ -23599,6 +23632,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000131 @@ -23609,6 +23643,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000291 ! quantile [Term] id: MS:4000132 @@ -23620,6 +23655,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000133 @@ -23631,6 +23667,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000134 @@ -23642,6 +23679,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000135 @@ -23653,6 +23691,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000136 @@ -23663,6 +23702,7 @@ is_a: MS:4000004 ! n-tuple relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000291 ! quantile [Term] id: MS:4000137 @@ -23674,6 +23714,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000138 @@ -23685,6 +23726,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000139 @@ -23696,6 +23738,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000140 @@ -23707,6 +23750,7 @@ relationship: has_metric_category MS:4000009 ! ID free metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_units UO:0000028 ! millisecond relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000036 ! outlier [Term] id: MS:4000141 @@ -23877,6 +23921,7 @@ relationship: has_metric_category MS:4000008 ! ID based metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000291 ! quantile [Term] id: MS:4000162 @@ -23888,6 +23933,7 @@ relationship: has_metric_category MS:4000008 ! ID based metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000291 ! quantile [Term] id: MS:4000163 @@ -23899,6 +23945,7 @@ relationship: has_metric_category MS:4000008 ! ID based metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000164 @@ -23910,6 +23957,7 @@ relationship: has_metric_category MS:4000008 ! ID based metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000165 @@ -23921,6 +23969,7 @@ relationship: has_metric_category MS:4000008 ! ID based metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000166 @@ -23932,6 +23981,7 @@ relationship: has_metric_category MS:4000008 ! ID based metric relationship: has_metric_category MS:4000022 ! MS2 metric relationship: has_value_type xsd:float ! The allowed value-type for this CV term relationship: has_units MS:1000043 ! intensity unit +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000167 @@ -24118,6 +24168,7 @@ relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_concept MS:1000014 ! accuracy relationship: has_units UO:0000169 ! parts per million relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000401 ! sample mean [Term] id: MS:4000179 @@ -24129,6 +24180,7 @@ relationship: has_metric_category MS:4000021 ! MS1 metric relationship: has_value_concept MS:1000830 ! precision relationship: has_units UO:0000169 ! parts per million relationship: has_value_type xsd:float ! The allowed value-type for this CV term +relationship: has_value_concept STATO:0000237 ! standard deviation [Term] id: MS:4000180