diff --git a/.github/workflows/validate-owl.yaml b/.github/workflows/validate-owl.yaml index 5961e68..bcad8f4 100644 --- a/.github/workflows/validate-owl.yaml +++ b/.github/workflows/validate-owl.yaml @@ -43,8 +43,8 @@ jobs: - name: Validate OWL File for OLS run: | cd ols4/dataload/rdf2json/target - wget https://raw.githubusercontent.com/ypriverol/psi-ms-CV/dev/owl-config-ols/foundry.json - wget https://raw.githubusercontent.com/ypriverol/psi-ms-CV/dev/owl-config-ols/fail_owl.json + wget https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/owl-config-ols/foundry.json + wget https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/owl-config-ols/fail_owl.json java -jar rdf2json-1.0-SNAPSHOT.jar --config foundry.json --output foundry_out.json if diff foundry_out.json fail_owl.json > /dev/null; then echo "The PSI-MS ontology has an error in the owl file and do not allow to import in OLS" diff --git a/psi-ms.obo b/psi-ms.obo index 1f163b9..5b5f62b 100644 --- a/psi-ms.obo +++ b/psi-ms.obo @@ -1,7 +1,7 @@ format-version: 1.2 -data-version: 4.1.182 -date: 11:10:2024 07:15 -saved-by: Joshua Klein +data-version: 4.1.183 +date: 30:10:2024 10:15 +saved-by: Yasset Perez-Riverol auto-generated-by: OBO-Edit 2.3.1 default-namespace: MS namespace-id-rule: * MS:$sequence(7,0,9999999)$ @@ -22667,6 +22667,13 @@ name: selected fragment theoretical m/z observed intensity spectrum def: "Spectrum for which the peaks are limited to a subset of known product ions that are important for subsequent identification, whose m/z values are corrected to theoretical values, and intensity values are experimentally derived." [PSI:PI] is_a: MS:1003072 ! spectrum origin type +[Term] +id: MS:1003425 +name: quantms +def: "Cloud-based pipeline for quantitative proteomics that enables the reanalysis of public proteomics data." [PMID:38965444] +is_a: MS:1001456 ! analysis software +is_a: MS:1001139 ! quantitation software name + [Term] id: MS:4000000 name: PSI-MS CV Quality Control Vocabulary