diff --git a/meeting_notes/2023/20231213_telco.md b/meeting_notes/2023/20231213_telco.md new file mode 100644 index 0000000..80f9753 --- /dev/null +++ b/meeting_notes/2023/20231213_telco.md @@ -0,0 +1,52 @@ +# QC working group teleconference 13 December 2023 + +- Wout Bittremieux +- Dave Tabb +- Julian Uszkoreit +- Mathias Walzer + +Excused: + +- Chris Bielow +- Nils Hoffmann + +--- + +## PSI Meeting 2024: + +- Registration for the [PSI Meeting 2024](https://www.psidev.info/hupo-psi-meeting-2024) will open soon. +- Which working group members will attend in-person? Yes: Wout. Maybe: Julian, Mathias. No: Dave. +- There will likely be several travel grants available to support in-person attendance. +- We'll try to schedule afternoon sessions to allow for remote participation, given the time zone difference. + +## TDAuditor + +- Dave shared an update on TDAuditor. The main next step will be to request several CV terms to finalize development of TDAuditor. +- mzQC integration is currently by reading a text file exported by TDAuditor in R and exporting to mzQC using rmzqc. + +## Specification document + +- Wout and Chris did a final pass through the specification document two weeks ago to make sure the reviewer comments were adequately addressed and to ensure that the document aligns with technical specifications. +- The specification document has been resubmitted to the PSI document process. Official PSI acceptance should hopefully follow soon! + +# mzQC software libraries manuscript + +We discussed steps needed to finalize the mzQC software libraries manuscript: + +- Mathias described the latest QC metrics data analysis update, followed by a discussion on how best to visualize and discuss the results in the manuscript. +- Mathias will share the latest version of the data analysis notebook for collaborative feedback on the data analysis presentation. +- Wout will do an editing pass through the manuscript. +- Goal: finish the manuscript in the next 1.5 week and put a preprint on bioRxiv before the holidays. + +## mzQC specification manuscript + +We briefly revisted the use cases for the mzQC specification manuscript: + +- Outlier detection: Wout & Dave will work on performing outlier detection on the previous MTb data Dave has used. +- Longitudinal analysis of QC metrics: Mathias has access to longitudinal data from QCloud. A use case geared towards core facilities is very important to include. +- Repository/large-scale analysis: Julian could get some data from MPC dating back from 2015 to now. +- Lipidomics: Nils has a lipidomics dataset where QC metrics can be investigated in the context of the experimental design. + +## Miscellaneous + +- No meeting in two weeks because of the holiday period. The next meeting will be on January 10, 2024.