diff --git a/meeting_notes/2024/20241213_telco.md b/meeting_notes/2024/20241213_telco.md new file mode 100644 index 0000000..b218fc8 --- /dev/null +++ b/meeting_notes/2024/20241213_telco.md @@ -0,0 +1,72 @@ +# QC working group teleconference 13 December 2024 + +- Chris Bielow +- Wout Bittremieux +- Julian Uszkoreit +- Mathias Walzer + +--- + +## In-person mzQC meeting + +**January 15–17, 2025** has been selected for the in-person meeting in Antwerp, Belgium. + +Schedule: + +- Tuesday, January 14: Arrival +- Wednesday, January 15: Meeting from 9:00 to 17:00 +- Thursday, January 16: Meeting from 9:00 to 17:00 +- Friday, January 17: Meeting from 9:00 to 12:00, followed by lunch and departures + +Travel arrangements: Wout has sent information to book travel and accommodation via email. Please book your travel prior to the holidays. + +General meeting preparations: + +- Wout to establish a centralized Google Drive for dataset sharing. +- Ensure all attendees have access to required resources (e.g., visitor accounts for meeting facilities). + +## Use cases and action items + +**Use case 1: Outlier detection** + +- MTb data available from a previous publication. +- Wout to finalize a Python script for conversion to mzQC and prepare the dataset for outlier detection analysis. + +**Use case 2: Longitudinal analysis** + +- Dataset: QCloud data. +- Action: + - Matthias to confirm the format (qcML or other) and convert the dataset to mzQC if required. + - Wout to follow up with CRG collaborators regarding potential attendance and data sharing. + +**Use case 3: Lipidomics data** + +- Decision pending input from Nils regarding the best dataset for batch effects analysis. +- Action: Wout to email Nils for dataset preparation and ensure readiness for the meeting. + +**Use case 4: Mass spectrometry imaging** + +- Collaboration with external partners (Theodore Alexandrov). +- Action: Wout to email collaborators to discuss progress and potential integration. + +## pymzqc + +Validator updates: + +- Discussion on automating the deployment of validator updates via GitHub actions. +- Issue: The current system doesn't display the validator version clearly. +- Action: + - Explore adding a feature to report active versions in outputs. + - Allocate time during the January meeting to work on validator improvements. + +pymzQC release: + +- Matthias shared progress on functionality updates. +- Pending: Resolving documentation issues and transitioning the PyPi account to personal. + +## CV term requests + +Julian's contributions: + +- Submitted multiple CV term requests. +- Agreement to review and discuss offline or during the next meeting to prioritize contentious terms.