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db location seems to not be an active website? #9
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Just wanted to pipe in - I'm having the same problem! |
@leannmlindsey, @albobson Sorry we changed the database storage location but forgot to change the download prompt in the script. You can get the database by using this address: http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz. |
Hi @HIT-ImmunologyLab, It seems that downloads of this database from that website are often very slow or time out with an error. Would it be possible to upload the database to zenodo (https://zenodo.org/) and download it from there? Thanks! |
Hi @alexweisberg, thank you for your feedback, we have uploaded the database for DBSCAN-SWA standalone version to Zenodo, you can access it through this URL: https://zenodo.org/records/10404224. We have also updated the main program and RADEME file of DBSCAN-SWA, users can set the "download_db" parameter to choose different database download strategies flexibly. |
Thank you very much for implementing this! |
When I run a test on your test data, it attempts to download the database from
http://www.microbiome-bigdata.com/static/download/DBSCAN-SWA/db.tar.gz
It then gives me this error:
You are running DBSCAN-SWA first time, the database will be downloaded in /uufs/chpc.utah.edu/common/home/u1323098/sundar-group-space2/u1323098/PHAGE_PROJECT/SOFTWARE/DBSCAN-SWA/db
--2022-07-11 14:08:18-- http://www.microbiome-bigdata.com/static/download/DBSCAN-SWA/db.tar.gz
Resolving www.microbiome-bigdata.com... 113.6.251.9
Connecting to www.microbiome-bigdata.com|113.6.251.9|:80... connected.
HTTP request sent, awaiting response... 404 Not Found
2022-07-11 14:08:19 ERROR 404: Not Found.
download error!please download from http://www.microbiome-bigdata.com/static/download/DBSCAN-SWA/db.tar.gz
When I go to the website to download manually, it gives me this error:
Not Found
The requested URL /static/download/DBSCAN-SWA/db.tar.gz was not found on this server.
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