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Work on paper for SomaVar #484

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17 of 25 tasks
MarvinDo opened this issue Feb 27, 2024 · 0 comments
Open
17 of 25 tasks

Work on paper for SomaVar #484

MarvinDo opened this issue Feb 27, 2024 · 0 comments
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publication VICCCP This issue is related to the VICC classification platform

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@MarvinDo
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MarvinDo commented Feb 27, 2024

Introduction:

  • Write Introduction

Results:

  • Write Results: Workflow and interface
  • Write Results: Automatic Classification Procedure
  • Write Results: Database Statistics
  • Write Results: Interlaboratory Comparison Test
  • Write Results: Comparison of SomaVar

Material & Methods:

  • Write Material & Methods: Web application architecture
  • Write Material & Methods: Frontend
  • Write Material & Methods: Keycloak
  • Write Material & Methods: Database
  • Write Material & Methods: Variant curation
  • Write Material & Methods: Annotation service architecture
  • Write Material & Methods: Table for annotations
  • Write Material & Methods: Task queue and message broker
  • Write Material & Methods: Deployment infrastructure
  • Write Material & Methods: Classification scheme: VICC

Discussion:

  • Write Discussion

IMAGES:

  • Entscheidungsbaum mit Klassifikations-Kriterien (welche sind automatisierbar und welche nicht?)
  • Screenshots Webseite: variant details & classification page
  • sankey diagram with oncokb
  • ringversuch??

OTHER:

  • agree on final name
  • change the url of the webpage based on the final name
  • make open read access
  • make open-source (public github)
@MarvinDo MarvinDo self-assigned this Feb 27, 2024
@MarvinDo MarvinDo added VICCCP This issue is related to the VICC classification platform publication labels Feb 27, 2024
@MarvinDo MarvinDo moved this to On hold in HerediVar Development May 29, 2024
@MarvinDo MarvinDo moved this from On hold to In progress in HerediVar Development Jun 7, 2024
@MarvinDo MarvinDo moved this from In progress to On hold in HerediVar Development Jul 24, 2024
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Labels
publication VICCCP This issue is related to the VICC classification platform
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Status: On hold
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