.gitignore

*.zip
*.txt
# *.csv
*.xls
*.xlsx
# *.tsv
*.tiff
*.html
*.pdf
*.docx
*.pptx

# simulated data
data/simulated_data/balanced/data/*
data/simulated_data/imbalanced/data/*
data/simulated_data/mild_imbalanced/data/*
evaluation/simulated/mild_imbalanced/results
evaluation/simulated/imbalanced/results/*
evaluation/simulated/balanced/results/*
evaluation/simulated/mild_imbalanced/meta/*
evaluation/simulated/imbalanced/meta/*
evaluation/simulated/balanced/meta/*

# raw MS data
**/00_raw_data/*

# MQ file
*.params
*.speclib
*).fasta
data/bacterial_data/00_raw_data/README.md

# R files
*.Rproj
*.Rhistory
*.RData
*.rds

# Python files
*.pyc

# logs 
*.log

# config , axcept FedProt folder
# *.json
*.yaml
*test_*.yml
# except FedProt folder
!FedProt/

# files in archive folders
**/archive/*

# ignore all figures except in ./figures/ folder
*.png
*.tiff
# *.svg
*.jpg
!figures/*.png
!figures/*.svg

# temporary notebooks (ipynb with tmp in name)
*tmp*.ipynb


# do not ignore the following files : logo.jpg and states.png
!logo2.jpg
!states.png