This repository has been archived by the owner on Dec 13, 2024. It is now read-only.
forked from mne-tools/mne-binder
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Dockerfile
62 lines (52 loc) · 1.64 KB
/
Dockerfile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
FROM jupyter/minimal-notebook:65761486d5d3
MAINTAINER Jean-Remi King <[email protected]>
# Install core debian packages
USER root
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update && apt-get -yq dist-upgrade \
&& apt-get install -yq --no-install-recommends \
openssh-client \
vim \
curl \
gcc \
&& apt-get clean
# Xvfb
RUN apt-get install -yq --no-install-recommends \
xvfb \
x11-utils \
libx11-dev \
qt5-default \
&& apt-get clean
ENV DISPLAY=:99
# Switch to notebook user
USER $NB_UID
# Upgrade the package managers
RUN pip install --upgrade pip
RUN npm i npm@latest -g
# Install Python packages
RUN pip install vtk && \
pip install boto && \
pip install h5py && \
pip install nose && \
pip install ipyevents && \
pip install ipywidgets && \
pip install mayavi && \
pip install nibabel && \
pip install numpy && \
pip install pillow && \
pip install pyqt5 && \
pip install scikit-learn && \
pip install scipy && \
pip install xvfbwrapper && \
pip install https://github.com/nipy/PySurfer/archive/master.zip
# Install Jupyter notebook extensions
RUN pip install RISE && \
jupyter nbextension install rise --py --sys-prefix && \
jupyter nbextension enable rise --py --sys-prefix && \
jupyter nbextension install mayavi --py --sys-prefix && \
jupyter nbextension enable mayavi --py --sys-prefix && \
npm cache clean --force
# Try to decrease initial IPython kernel load times
RUN ipython -c "import matplotlib.pyplot as plt; print(plt)"
# Add an x-server to the entrypoint. This is needed by Mayavi
ENTRYPOINT ["tini", "-g", "--", "xvfb-run"]