From ef9943fb102da5e1c6db57257d9013b1351e7461 Mon Sep 17 00:00:00 2001 From: John Grimes Date: Mon, 10 Jun 2024 16:16:51 -0500 Subject: [PATCH 1/4] Add bun to dev dependencies in test report --- test_report/package.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/test_report/package.json b/test_report/package.json index 76b7efb..ccc1a26 100644 --- a/test_report/package.json +++ b/test_report/package.json @@ -12,9 +12,10 @@ "@rollup/plugin-commonjs": "^16.0.0", "@rollup/plugin-node-resolve": "^10.0.0", "autoprefixer": "^10.1.0", + "bun": "^1.1.8", "postcss": "^8.2.2", "postcss-load-config": "^3.0.0", - "rollup": "^2.3.4", + "rollup": "^2.79.1", "rollup-plugin-css-only": "^3.1.0", "rollup-plugin-livereload": "^2.0.0", "rollup-plugin-svelte": "^7.0.0", From e2b50abbc127599fc941a3ba2fac27bf720e6980 Mon Sep 17 00:00:00 2001 From: John Grimes Date: Mon, 10 Jun 2024 16:17:22 -0500 Subject: [PATCH 2/4] Add ajv-cli to package-lock.json in sof-js --- sof-js/package-lock.json | 155 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 155 insertions(+) diff --git a/sof-js/package-lock.json b/sof-js/package-lock.json index 61fca42..dce148d 100644 --- a/sof-js/package-lock.json +++ b/sof-js/package-lock.json @@ -10,6 +10,7 @@ "license": "ISC", "dependencies": { "ajv": "^8.12.0", + "ajv-cli": "^5.0.0", "fhirpath": "3.9.0", "prettier": "^3.0.3" } @@ -46,6 +47,31 @@ "url": "https://github.com/sponsors/epoberezkin" } }, + "node_modules/ajv-cli": { + "version": "5.0.0", + "resolved": "https://registry.npmjs.org/ajv-cli/-/ajv-cli-5.0.0.tgz", + "integrity": "sha512-LY4m6dUv44HTyhV+u2z5uX4EhPYTM38Iv1jdgDJJJCyOOuqB8KtZEGjPZ2T+sh5ZIJrXUfgErYx/j3gLd3+PlQ==", + "dependencies": { + "ajv": "^8.0.0", + "fast-json-patch": "^2.0.0", + "glob": "^7.1.0", + "js-yaml": "^3.14.0", + "json-schema-migrate": "^2.0.0", + "json5": "^2.1.3", + "minimist": "^1.2.0" + }, + "bin": { + "ajv": "dist/index.js" + }, + "peerDependencies": { + "ts-node": ">=9.0.0" + }, + "peerDependenciesMeta": { + "ts-node": { + "optional": true + } + } + }, "node_modules/antlr4": { "version": "4.9.3", "resolved": "https://registry.npmjs.org/antlr4/-/antlr4-4.9.3.tgz", @@ -62,6 +88,20 @@ "sprintf-js": "~1.0.2" } }, + "node_modules/balanced-match": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/balanced-match/-/balanced-match-1.0.2.tgz", + "integrity": "sha512-3oSeUO0TMV67hN1AmbXsK4yaqU7tjiHlbxRDZOpH0KW9+CeX4bRAaX0Anxt0tx2MrpRpWwQaPwIlISEJhYU5Pw==" + }, + "node_modules/brace-expansion": { + "version": "1.1.11", + "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-1.1.11.tgz", + "integrity": "sha512-iCuPHDFgrHX7H2vEI/5xpz07zSHB00TpugqhmYtVmMO6518mCuRMoOYFldEBl0g187ufozdaHgWKcYFb61qGiA==", + "dependencies": { + "balanced-match": "^1.0.0", + "concat-map": "0.0.1" + } + }, "node_modules/coffeescript": { "version": "2.7.0", "resolved": "https://registry.npmjs.org/coffeescript/-/coffeescript-2.7.0.tgz", @@ -79,6 +119,11 @@ 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"sha512-4j5uBaTnsYAV5ebkidvxiLUYOwjQ+JSFljeqfTxCrH9bDmlCQaOJFS84oDJ2rAXZq2yskmk3ORfoP9DCwqFNig==", + "dependencies": { + "fast-deep-equal": "^2.0.1" + }, + "engines": { + "node": ">= 0.4.0" + } + }, + "node_modules/fast-json-patch/node_modules/fast-deep-equal": { + "version": "2.0.1", + "resolved": "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-2.0.1.tgz", + "integrity": "sha512-bCK/2Z4zLidyB4ReuIsvALH6w31YfAQDmXMqMx6FyfHqvBxtjC0eRumeSu4Bs3XtXwpyIywtSTrVT99BxY1f9w==" + }, "node_modules/fhirpath": { "version": "3.9.0", "resolved": "https://registry.npmjs.org/fhirpath/-/fhirpath-3.9.0.tgz", @@ -150,12 +211,47 @@ "node": ">=8.9.0" } }, + "node_modules/fs.realpath": { + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz", + "integrity": "sha512-OO0pH2lK6a0hZnAdau5ItzHPI6pUlvI7jMVnxUQRtw4owF2wk8lOSabtGDCTP4Ggrg2MbGnWO9X8K1t4+fGMDw==" + }, + "node_modules/glob": { + "version": "7.2.3", + "resolved": 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"sha512-k92I/b08q4wvFscXCLvqfsHCrjrF7yiXsQuIVvVE7N82W3+aqpzuUdBbfhWcy/FZR3/4IgflMgKLOsvPDrGCJA==", + "deprecated": "This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful.", + "dependencies": { + "once": "^1.3.0", + "wrappy": "1" + } + }, "node_modules/inherits": { "version": "2.0.4", "resolved": "https://registry.npmjs.org/inherits/-/inherits-2.0.4.tgz", @@ -197,11 +293,30 @@ "js-yaml": "bin/js-yaml.js" } }, + "node_modules/json-schema-migrate": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/json-schema-migrate/-/json-schema-migrate-2.0.0.tgz", + "integrity": "sha512-r38SVTtojDRp4eD6WsCqiE0eNDt4v1WalBXb9cyZYw9ai5cGtBwzRNWjHzJl38w6TxFkXAIA7h+fyX3tnrAFhQ==", + "dependencies": { + "ajv": "^8.0.0" + } + }, "node_modules/json-schema-traverse": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-1.0.0.tgz", "integrity": "sha512-NM8/P9n3XjXhIZn1lLhkFaACTOURQXjWhV4BA/RnOv8xvgqtqpAX9IO4mRQxSx1Rlo4tqzeqb0sOlruaOy3dug==" }, + "node_modules/json5": { + 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"resolved": "https://registry.npmjs.org/minimist/-/minimist-1.2.8.tgz", + "integrity": "sha512-2yyAR8qBkN3YuheJanUpWC5U3bb5osDywNB8RzDVlDwDHbocAJveqqj1u8+SVD7jkWT4yvsHCpWqqWqAxb0zCA==", + "funding": { + "url": "https://github.com/sponsors/ljharb" + } + }, + "node_modules/once": { + "version": "1.4.0", + "resolved": "https://registry.npmjs.org/once/-/once-1.4.0.tgz", + "integrity": "sha512-lNaJgI+2Q5URQBkccEKHTQOPaXdUxnZZElQTZY0MFUAuaEqe1E+Nyvgdz/aIyNi6Z9MzO5dv1H8n58/GELp3+w==", + "dependencies": { + "wrappy": "1" + } + }, + "node_modules/path-is-absolute": { + "version": "1.0.1", + "resolved": "https://registry.npmjs.org/path-is-absolute/-/path-is-absolute-1.0.1.tgz", + "integrity": "sha512-AVbw3UJ2e9bq64vSaS9Am0fje1Pa8pbGqTTsmXfaIiMpnr5DlDhfJOuLj9Sf95ZPVDAUerDfEk88MPmPe7UCQg==", + "engines": { + "node": ">=0.10.0" + } + }, "node_modules/prettier": { "version": "3.2.4", "resolved": "https://registry.npmjs.org/prettier/-/prettier-3.2.4.tgz", @@ -322,6 +472,11 @@ "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz", "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==" }, + "node_modules/wrappy": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", + "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==" + }, "node_modules/xmldoc": { "version": "0.4.0", "resolved": "https://registry.npmjs.org/xmldoc/-/xmldoc-0.4.0.tgz", From 6b5143c96ee5b330bcb20c6e501fb70f2b8ea5f9 Mon Sep 17 00:00:00 2001 From: John Grimes Date: Mon, 10 Jun 2024 16:41:00 -0500 Subject: [PATCH 3/4] Make changes to conform to FHIR Foundation requirements --- CONTRIBUTING.md | 134 ++++++++++++++++++++++++++++++++++++++++++++++++ README.md | 34 +++++++++++- 2 files changed, 166 insertions(+), 2 deletions(-) create mode 100644 CONTRIBUTING.md diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 0000000..1a1292e --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,134 @@ + +# Contributor Covenant Code of Conduct + +## Our Pledge + +We as members, contributors, and leaders pledge to make participation in our +community a harassment-free experience for everyone, regardless of age, body +size, visible or invisible disability, ethnicity, sex characteristics, gender +identity and expression, level of experience, education, socio-economic status, +nationality, personal appearance, race, caste, color, religion, or sexual +identity and orientation. + +We pledge to act and interact in ways that contribute to an open, welcoming, +diverse, inclusive, and healthy community. + +## Our Standards + +Examples of behavior that contributes to a positive environment for our +community include: + +* Demonstrating empathy and kindness toward other people +* Being respectful of differing opinions, viewpoints, and experiences +* Giving and gracefully accepting constructive feedback +* Accepting responsibility and apologizing to those affected by our mistakes, + and learning from the experience +* Focusing on what is best not just for us as individuals, but for the overall + community + +Examples of unacceptable behavior include: + +* The use of sexualized language or imagery, and sexual attention or advances of + any kind +* Trolling, insulting or derogatory comments, and personal or political attacks +* Public or private harassment +* Publishing others' private information, such as a physical or email address, + without their explicit permission +* Other conduct which could reasonably be considered inappropriate in a + professional setting + +## Enforcement Responsibilities + +Community leaders are responsible for clarifying and enforcing our standards of +acceptable behavior and will take appropriate and fair corrective action in +response to any behavior that they deem inappropriate, threatening, offensive, +or harmful. + +Community leaders have the right and responsibility to remove, edit, or reject +comments, commits, code, wiki edits, issues, and other contributions that are +not aligned to this Code of Conduct, and will communicate reasons for moderation +decisions when appropriate. + +## Scope + +This Code of Conduct applies within all community spaces, and also applies when +an individual is officially representing the community in public spaces. +Examples of representing our community include using an official email address, +posting via an official social media account, or acting as an appointed +representative at an online or offline event. + +## Enforcement + +Instances of abusive, harassing, or otherwise unacceptable behavior may be +reported to the community leaders responsible for enforcement at +[INSERT CONTACT METHOD]. +All complaints will be reviewed and investigated promptly and fairly. + +All community leaders are obligated to respect the privacy and security of the +reporter of any incident. + +## Enforcement Guidelines + +Community leaders will follow these Community Impact Guidelines in determining +the consequences for any action they deem in violation of this Code of Conduct: + +### 1. Correction + +**Community Impact**: Use of inappropriate language or other behavior deemed +unprofessional or unwelcome in the community. + +**Consequence**: A private, written warning from community leaders, providing +clarity around the nature of the violation and an explanation of why the +behavior was inappropriate. A public apology may be requested. + +### 2. Warning + +**Community Impact**: A violation through a single incident or series of +actions. + +**Consequence**: A warning with consequences for continued behavior. No +interaction with the people involved, including unsolicited interaction with +those enforcing the Code of Conduct, for a specified period of time. This +includes avoiding interactions in community spaces as well as external channels +like social media. Violating these terms may lead to a temporary or permanent +ban. + +### 3. Temporary Ban + +**Community Impact**: A serious violation of community standards, including +sustained inappropriate behavior. + +**Consequence**: A temporary ban from any sort of interaction or public +communication with the community for a specified period of time. No public or +private interaction with the people involved, including unsolicited interaction +with those enforcing the Code of Conduct, is allowed during this period. +Violating these terms may lead to a permanent ban. + +### 4. Permanent Ban + +**Community Impact**: Demonstrating a pattern of violation of community +standards, including sustained inappropriate behavior, harassment of an +individual, or aggression toward or disparagement of classes of individuals. + +**Consequence**: A permanent ban from any sort of public interaction within the +community. + +## Attribution + +This Code of Conduct is adapted from the [Contributor Covenant][homepage], +version 2.1, available at +[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1]. + +Community Impact Guidelines were inspired by +[Mozilla's code of conduct enforcement ladder][Mozilla CoC]. + +For answers to common questions about this code of conduct, see the FAQ at +[https://www.contributor-covenant.org/faq][FAQ]. Translations are available at +[https://www.contributor-covenant.org/translations][translations]. + +[homepage]: https://www.contributor-covenant.org +[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html +[Mozilla CoC]: https://github.com/mozilla/diversity +[FAQ]: https://www.contributor-covenant.org/faq +[translations]: https://www.contributor-covenant.org/translations + diff --git a/README.md b/README.md index ecd3b53..f513b41 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,25 @@ # SQL on FHIR® (v2.0) -This project provides the source for the SQL on FHIR v2.0 Implementation Guide +## Introduction + +This project provides the source for the SQL on FHIR v2.0 Implementation Guide. + +SQL on FHIR is a specification that defines a standard way to define portable, +tabular projections of FHIR data. + +The [FHIR®](https://hl7.org/fhir) standard is a great fit for RESTful and +JSON-based systems, helping make healthcare data liquidity real. This spec aims +to take FHIR usage a step futher, making FHIR work well with familiar and +efficient SQL engines and surrounding ecosystems. + +We do this by creating simple, tabular *views* of the underlying FHIR data that +are tailored to specific needs. Views are defined +with [FHIRPath](https://hl7.org/fhirpath/) expressions in a logical structure to +specify things like column names and unnested items. [**Read the specification →**](https://build.fhir.org/ig/FHIR/sql-on-fhir-v2/) -Check the existing [implementations page][] or register [your own](#registering-your-implementation) +Check the existing [implementations page](https://fhir.github.io/sql-on-fhir-v2/#impls) or register [your own](#registering-your-implementation). Check out the [interactive playground][]. @@ -13,6 +28,21 @@ Check out the [interactive playground][]. [interactive playground]: https://fhir.github.io/sql-on-fhir-v2/#pg [implementations page]: https://fhir.github.io/sql-on-fhir-v2/#impls +## FHIR Foundation Project Statement + +* Maintainers: Ryan Brush, Dan Gottlieb, John Grimes, Josh Mandel, Nikolai + Ryzhikov, Arjun Sanyal +* Issues / + Discussion: [analytics on FHIR](https://chat.fhir.org/#narrow/stream/179219-analytics-on-FHIR) + @chat.fhir.org +* License: [MIT](./LICENSE.md) +* Contribution Policy: [CONTRIBUTING.md](./CONTRIBUTING.md) +* Security Information: This repository consists of code to build a static + implementation guide, and an implementation for reference only. +* Compliance Information: This specification and its reference implementation + are tested using the test suite in the [tests](./tests) directory. + See [Tests Overview](#tests-overview) for more information. + ## Content Content as markdown is now found in [input/pagecontent](input/pagecontent). From 57b9035bffdcf048ecb4967175156c1c06343a37 Mon Sep 17 00:00:00 2001 From: John Grimes Date: Mon, 10 Jun 2024 16:43:15 -0500 Subject: [PATCH 4/4] Fix typo in README introduction --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index f513b41..42d8538 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ tabular projections of FHIR data. The [FHIR®](https://hl7.org/fhir) standard is a great fit for RESTful and JSON-based systems, helping make healthcare data liquidity real. This spec aims -to take FHIR usage a step futher, making FHIR work well with familiar and +to take FHIR usage a step further, making FHIR work well with familiar and efficient SQL engines and surrounding ecosystems. We do this by creating simple, tabular *views* of the underlying FHIR data that