From aafa4ff26aa68a256194daa160d4bbe512592602 Mon Sep 17 00:00:00 2001 From: chbk Date: Mon, 21 Jun 2021 12:50:02 +0200 Subject: [PATCH] Update README.md --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 5f90ad8..20a650a 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ To use this pipeline, simply clone or download this repository, and install the Try out this nextflow pipeline with: - ./nextflow-run FAANG/analysis-TAGADA --revision 1.0.1 --output directory --profile test docker + ./nextflow-run FAANG/analysis-TAGADA --revision 1.0.2 --output directory --profile test docker The `./nextflow-run` launcher script replaces the `nextflow run` command and grants these benefits: - Options can receive multiple space-separated parameters and unquoted globs. @@ -90,7 +90,7 @@ The pipeline executes the following main processes: The annotations of long non-coding RNAs are saved to `output/annotation`. 9. __Quantify__ genes and transcripts with [StringTie](https://github.com/gpertea/stringtie), and __format__ them into tabulated files. The TPM values and read counts for each annotation are saved to `output/quantification`. -10. Aggregates quality controls into a __report__ with [MultiQC](https://github.com/ewels/MultiQC). +10. Aggregate quality controls into a __report__ with [MultiQC](https://github.com/ewels/MultiQC). The report is saved to `output/control`.