From 30af494bb190f044c2a522e1d72525b6824eb9ac Mon Sep 17 00:00:00 2001
From: Arthur <arn203@exeter.ac.uk>
Date: Tue, 3 Dec 2024 12:55:41 +0000
Subject: [PATCH] read targets as LongDNA

---
 src/utils.jl | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/utils.jl b/src/utils.jl
index a2e702f..412e6cb 100644
--- a/src/utils.jl
+++ b/src/utils.jl
@@ -3,7 +3,7 @@
 #### Read in fasta files
 """
     get_reference(ref_fasta)
-    
+
 Takes a path to a reference fasta. Returns a `Vector{LongDNA{4}}` of reference sequences 
 and a matrix taxonomic classifications. The reference fasta must be a DADA2-formatted reference database. 
 See [here](https://benjjneb.github.io/dada2/training.html) for examples.
@@ -34,7 +34,7 @@ function get_targets(seq_fasta)
     seqs = []
     open(FASTA.Reader, seq_fasta) do reader
         for record in reader
-                push!(seqs,sequence(record))
+                push!(seqs,LongDNA{4}sequence(record))
                 push!(ids,identifier(record))
         end
     end