protocol_valid-3.json

{
    "data": {
        "objectId": {
            "alias": "genome_indexing_Prot23",
            "centerName": "EBI-TEST"
        },
        "objectTitle": "Genome indexing protocol",
        "protocolDescription": "Index the reads in the run. You can use as input a FASTA file (preferred) or a FASTQ. The file can also be compressed with gzip, having a .gz extension. The script will uncompress the file and pass it to FASTA format if it's a FASTQ file. Run ``./index.sh your_run_id /mnt/c/your_run.fastq.gz``.",
        "protocolPerformers": [
            "EGA's testing bioinformaticians"
        ],
        "protocolRelationships": [
            {
                "rTarget": {
                    "objectId": {
                        "egaAccession": "EGAZ00002045411"
                    },
                    "objectType": "analysis"
                },
                "rType": "referencedBy"
            },
            {
                "rSource": {
                    "objectId": {
                        "egaAccession": "EGAB00002045411"
                    },
                    "objectType": "submission"
                },
                "rType": "referencedBy"
            }
        ],
        "protocolSoftware": [
            "FastQC v1.1.0 [SWO:1100144]",
            "SAMtools [SWO:1100143]"
        ],
        "protocolTypeDescriptor": {
            "protocolType": "data transformation",
            "protocolSubtype": {
                "termId": "operation:3211",
                "termLabel": "genome indexing"
            }
        },
        "schemaDescriptor": {
            "commonSchemaVersion": "0.0.0",
            "describedBySchemaUri": "https://raw.githubusercontent.com/EbiEga/ega-metadata-schema/main/schemas/EGA.protocol.json",
            "objectSchemaVersion": "0.0.0",
            "objectType": "protocol"
        }
    },
    "schema": {
        "$ref": "https://raw.githubusercontent.com/EbiEga/ega-metadata-schema/main/schemas/EGA.protocol.json"
    }
}