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ega-4-defs-spot-descriptor.md

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Spot descriptor Schema

https://raw.githubusercontent.com/EbiEga/ega-metadata-schema/main/schemas/EGA.experiment.json#/properties/experimentTypeSpecifications/properties/sequencingExperiment/properties/spotDescriptor

The 'spotDescriptor' specifies how to decode the individual reads of interest from the monolithic spot sequence. The spot descriptor contains aspects of the experimental design, platform, and processing information. There will be two methods of specification: one will be an index into a table of typical decodings, the other being an exact specification. This construct is needed for loading data and for interpreting the loaded sequencing assays. It can be omitted if the loader can infer read layout (from multiple input files or from one input files).

Abstract Extensible Status Identifiable Custom Properties Additional Properties Access Restrictions Defined In
Can be instantiated No Unknown status Unknown identifiability Forbidden Forbidden none EGA.experiment.json*

spotDescriptor Type

object[] (Spot decode spec)

spotDescriptor Constraints

minimum number of items: the minimum number of items for this array is: 1

unique items: all items in this array must be unique. Duplicates are not allowed.