From a8d48c4a40c7186f96c63f2623c31b20d18d361e Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Tue, 7 Nov 2023 15:22:28 -0500 Subject: [PATCH] Obsolete 'benign struma ovarii' and merge with 'struma ovarii' --- src/ontology/doid-edit.owl | 18 ++++++++++-------- 1 file changed, 10 insertions(+), 8 deletions(-) diff --git a/src/ontology/doid-edit.owl b/src/ontology/doid-edit.owl index 00fee5d8e..0d08a1067 100644 --- a/src/ontology/doid-edit.owl +++ b/src/ontology/doid-edit.owl @@ -142058,18 +142058,20 @@ SubClassOf(obo:DOID_264 obo:DOID_3850) # Class: obo:DOID_2640 (struma ovarii) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/26374222") obo:IAO_0000115 obo:DOID_2640 "An ovarian germ cell monodermal and highly specialized teratoma that is composed either exclusively or predominantly of thyroid tissue.") +AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/25640097") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/26374222") obo:IAO_0000115 obo:DOID_2640 "An ovarian benign neoplasm that is composed either exclusively or predominantly of thyroid tissue.") +AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_2640 "DOID:5209") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "ICDO:9090/0") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "MESH:D013330") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "NCI:C7468") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "SNOMEDCT_US_2023_03_01:24327009") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "UMLS_CUI:C0038478") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_2640 "disease_ontology") +AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:DOID_2640 "benign struma ovarii") AnnotationAssertion(oboInOwl:id obo:DOID_2640 "DOID:2640") AnnotationAssertion(oboInOwl:inSubset obo:DOID_2640 doid:DO_cancer_slim) AnnotationAssertion(oboInOwl:inSubset obo:DOID_2640 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_2640 "struma ovarii") -SubClassOf(obo:DOID_2640 obo:DOID_2641) +SubClassOf(obo:DOID_2640 obo:DOID_0060112) # Class: obo:DOID_2641 (ovarian germ cell monodermal and highly specialized teratoma) @@ -167557,17 +167559,17 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_5208 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_5208 "DOID:5208") AnnotationAssertion(oboInOwl:inSubset obo:DOID_5208 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_5208 "malignant struma ovarii") -SubClassOf(obo:DOID_5208 obo:DOID_2640) +SubClassOf(obo:DOID_5208 obo:DOID_2641) -# Class: obo:DOID_5209 (benign struma ovarii) +# Class: obo:DOID_5209 (obsolete benign struma ovarii) AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/25640097") obo:IAO_0000115 obo:DOID_5209 "An ovarian benign neoplasm struma ovarii that is not cancerous and that is composed either exclusively or predominantly of thyroid tissue.") +AnnotationAssertion(obo:IAO_0100001 obo:DOID_5209 obo:DOID_2640) AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_5209 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_5209 "DOID:5209") -AnnotationAssertion(oboInOwl:inSubset obo:DOID_5209 doid:NCIthesaurus) -AnnotationAssertion(rdfs:comment obo:DOID_5209 "Obsoleted xrefs (version): NCI:C40012 (29.08d), UMLS_CUI:C1511104 (2023AA).") -AnnotationAssertion(rdfs:label obo:DOID_5209 "benign struma ovarii") -SubClassOf(obo:DOID_5209 obo:DOID_0060112) +AnnotationAssertion(rdfs:comment obo:DOID_5209 "Obsoleted in conjunction with obsoletion of corresponding cross-references (version): NCI:C40012 (29.08d), UMLS_CUI:C1511104 (2023AA). 'struma ovarii' is considered benign making this term redundant.") +AnnotationAssertion(rdfs:label obo:DOID_5209 "obsolete benign struma ovarii") +AnnotationAssertion(owl:deprecated obo:DOID_5209 "true"^^xsd:boolean) # Class: obo:DOID_5212 (congenital disorder of glycosylation)