From 89529679e5fa8c76529984c0994b2dd0ef9111b8 Mon Sep 17 00:00:00 2001 From: lschriml Date: Mon, 29 Jan 2024 14:43:42 -0500 Subject: [PATCH] updated osteosarcoma child term classifications, added definitions --- src/ontology/doid-edit.owl | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/src/ontology/doid-edit.owl b/src/ontology/doid-edit.owl index f1332bea3..fd0665010 100644 --- a/src/ontology/doid-edit.owl +++ b/src/ontology/doid-edit.owl @@ -151271,7 +151271,7 @@ SubClassOf(obo:DOID_3345 obo:DOID_9455) # Class: obo:DOID_3347 (osteosarcoma) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(dc:type obo:ECO_0007641) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Osteosarcoma") Annotation(oboInOwl:hasDbXref "url:http://www.cancer.gov/dictionary?cdrid=45395") obo:IAO_0000115 obo:DOID_3347 "A bone sarcoma that is located_in bone that has_material_basis_in cells of mesenchymal origin.") +AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(dc:type obo:ECO_0007641) Annotation(oboInOwl:hasDbXref "url:http://en.wikipedia.org/wiki/Osteosarcoma") Annotation(oboInOwl:hasDbXref "url:http://www.cancer.gov/dictionary?cdrid=45395") obo:IAO_0000115 obo:DOID_3347 "A bone sarcoma that is located_in bone that has_material_basis_in cells of mesenchymal origin. It usually involves bones and less frequently extraosseous sites. It often involves the long bones (particularly distal femur, proximal tibia, and proximal humerus).") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_3347 "DOID:183") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3347 "GARD:7284") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3347 "ICDO:9180/3") @@ -151384,6 +151384,7 @@ SubClassOf(obo:DOID_3355 obo:DOID_201) # Class: obo:DOID_3356 (localized osteosarcoma) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://www.cancer.org/cancer/types/osteosarcoma/detection-diagnosis-staging/staging.html") obo:IAO_0000115 obo:DOID_3356 "An osteosarcoma that is confined to a specific site without evidence of spread to other anatomic sites.") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3356 "NCI:C7780") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3356 "UMLS_CUI:C0278511") AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_3356 "localised Osteogenic sarcoma"@en) @@ -151393,7 +151394,7 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_3356 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_3356 "DOID:3356") AnnotationAssertion(oboInOwl:inSubset obo:DOID_3356 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_3356 "localized osteosarcoma") -SubClassOf(obo:DOID_3356 obo:DOID_184) +SubClassOf(obo:DOID_3356 obo:DOID_3347) SubClassOf(obo:DOID_3356 ObjectUnionOf(ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000057) ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000058) ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000062))) SubClassOf(obo:DOID_3356 ObjectSomeValuesFrom(obo:RO_0004026 obo:UBERON_0001474)) @@ -151408,7 +151409,7 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_3357 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_3357 "DOID:3357") AnnotationAssertion(oboInOwl:inSubset obo:DOID_3357 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_3357 "extraosseous osteosarcoma") -SubClassOf(obo:DOID_3357 obo:DOID_201) +SubClassOf(obo:DOID_3357 obo:DOID_3347) SubClassOf(obo:DOID_3357 ObjectUnionOf(ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000057) ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000058) ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000062))) # Class: obo:DOID_3359 (obsolete malignant extraskeletal cartilaginous and osseous tumor) @@ -151657,6 +151658,7 @@ SubClassOf(obo:DOID_3374 obo:DOID_3376) # Class: obo:DOID_3376 (bone osteosarcoma) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://my.clevelandclinic.org/health/diseases/15041-osteosarcoma") obo:IAO_0000115 obo:DOID_3376 "An osteosarcoma that is an usually aggressive malignant bone-forming mesenchymal neoplasm arising from the bone. It may arise de novo or from a pre-existing lesion of the bone. Pain and a palpable mass are the most frequent clinical sign and symptom. It may spread to other anatomic sites, particularly the lungs.") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_3376 "DOID:8580") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3376 "NCI:C53707") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_3376 "SNOMEDCT_US_2023_03_01:307576001") @@ -189341,7 +189343,7 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_7827 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_7827 "DOID:7827") AnnotationAssertion(oboInOwl:inSubset obo:DOID_7827 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_7827 "adult extraosseous osteosarcoma") -SubClassOf(obo:DOID_7827 obo:DOID_3347) +SubClassOf(obo:DOID_7827 obo:DOID_3357) SubClassOf(obo:DOID_7827 ObjectSomeValuesFrom(obo:RO_0002488 obo:HP_0003581)) # Class: obo:DOID_783 (end stage renal disease)