From 419bc22e343398934c1d2e36a5e7d367340c16cf Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Mon, 1 Jul 2024 13:48:00 -0400 Subject: [PATCH] Update axioms of common cold & scarlet fever To ensure they are classified as infectious diseases. See #1356 --- src/ontology/doid-edit.owl | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/src/ontology/doid-edit.owl b/src/ontology/doid-edit.owl index 1a108236..b0242454 100644 --- a/src/ontology/doid-edit.owl +++ b/src/ontology/doid-edit.owl @@ -104197,7 +104197,7 @@ SubClassOf(obo:DOID_10458 ObjectSomeValuesFrom(obo:RO_0002452 obo:SYMP_0000613)) # Class: obo:DOID_10459 (common cold) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007643) Annotation(oboInOwl:hasDbXref "url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=common%20cold") obo:IAO_0000115 obo:DOID_10459 "An upper respiratory tract disease which involves inflammation of the mucous membranes of the nose, throat, eyes, and eustachian tubes with watery then purulent discharge. This is an acute contagious disease caused by rhinoviruses, human parainfluenza viruses, human respiratory syncytial virus, influenza viruses, adenoviruses, enteroviruses, or metapneumovirus."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007640) Annotation(dc:type obo:ECO_0007643) Annotation(oboInOwl:hasDbXref "url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=common%20cold") Annotation(oboInOwl:hasDbXref "url:https://medlineplus.gov/commoncold.html") obo:IAO_0000115 obo:DOID_10459 "An upper respiratory tract disease which involves inflammation of the mucous membranes of the nose, throat, eyes, and eustachian tubes with watery then purulent discharge. This is an acute contagious disease caused by rhinoviruses, human parainfluenza viruses, human respiratory syncytial virus, influenza viruses, adenoviruses, enteroviruses, or metapneumovirus."@en) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_10459 "ICD10CM:J00") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_10459 "ICD9CM:460") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_10459 "MESH:D003139") @@ -104216,6 +104216,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_10459 "DOID:10459") AnnotationAssertion(oboInOwl:inSubset obo:DOID_10459 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_10459 "common cold"@en) SubClassOf(obo:DOID_10459 obo:DOID_974) +SubClassOf(obo:DOID_10459 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_10239)) # Class: obo:DOID_10460 (nasopharyngitis) @@ -196643,7 +196644,7 @@ SubClassOf(obo:DOID_8593 obo:DOID_8527) # Class: obo:DOID_8596 (scarlet fever) -AnnotationAssertion(Annotation(dc:type obo:ECO_0007643) Annotation(oboInOwl:hasDbXref "url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=scarlet%20fever") obo:IAO_0000115 obo:DOID_8596 "An upper respiratory tract disease described as an acute contagious disease caused by Group A bacteria of the genus Streptococcus (especially various strains of S. pyogenes) and characterized by inflammation of the nose, throat, and mouth, generalized toxemia, and a red rash."@en) +AnnotationAssertion(Annotation(dc:type obo:ECO_0007643) Annotation(oboInOwl:hasDbXref "url:https://www.merriam-webster.com/dictionary/scarlet%20fever#medicalDictionary") obo:IAO_0000115 obo:DOID_8596 "An upper respiratory tract disease described as an acute contagious disease caused by Group A bacteria of the genus Streptococcus (especially various strains of S. pyogenes) and characterized by inflammation of the nose, throat, and mouth, generalized toxemia, and a red rash."@en) AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_8596 "DOID:8597") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_8596 "ICD10CM:A38") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_8596 "ICD9CM:034") @@ -196660,6 +196661,7 @@ AnnotationAssertion(oboInOwl:id obo:DOID_8596 "DOID:8596") AnnotationAssertion(oboInOwl:inSubset obo:DOID_8596 doid:NCIthesaurus) AnnotationAssertion(rdfs:label obo:DOID_8596 "scarlet fever"@en) SubClassOf(obo:DOID_8596 obo:DOID_974) +SubClassOf(obo:DOID_8596 ObjectSomeValuesFrom(obo:IDO_0000664 obo:NCBITaxon_1314)) # Class: obo:DOID_8598 (obsolete mild degree recurrent episode manic disorder)