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Output will be in the directory ./test_out
Reading input ... done.
Setting up the scoring function ... done.
Using heuristic search_depth
Analyzing the binding site ... done.
GPU Platform: NVIDIA CUDA
GPU Device: NVIDIA GeForce RTX 3090
Using random seed: 1260569307
1.Change -DSMALL_BOX into -DLARGE_BOX in Makefile
2.Type make source and $(ONE_OF_VINA_GPU_2_1_METHODS) --config ./input_file_example/2bm2_config.txt
execute:
./AutoDock-Vina-GPU-2-1 --config ./input_file_example/2bm2_config.txt
Errors may occur:
Using virtual sreening mode
Output will be in the directory ./test_out
Reading input ... done.
Setting up the scoring function ... done.
Using heuristic search_depth
Analyzing the binding site ... done.
GPU Platform: NVIDIA CUDA
GPU Device: NVIDIA GeForce RTX 3090
Using random seed: 1260569307
Build kernel 1 from source
OpenCL version: 3.0
Build kernel 2 from source
OpenCL version: 3.0
Err-6:CL_OUT_OF_HOST_MEMORY
Only - DSMALL_BOX can operate normally
AutoDock-Vina-GPU-2.1$ free -h
总计 已用 空闲 共享 缓冲/缓存 可用
内存: 251Gi 4.8Gi 223Gi 5.0Mi 23Gi 244Gi
交换: 2.0Gi 0B 2.0Gi
AutoDock-Vina-GPU-2.1$ ulimit -s
unlimited
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