From 55a9d53b78ced2b2e78e278a78358365a5102ff8 Mon Sep 17 00:00:00 2001 From: Adam Youlin He Date: Sun, 4 Aug 2024 23:51:56 -0400 Subject: [PATCH] Update rDeps.R Install RPHAST via github since the CRAN package has been pulled. --- rDeps.R | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/rDeps.R b/rDeps.R index da31941..5101b99 100644 --- a/rDeps.R +++ b/rDeps.R @@ -4,10 +4,12 @@ install.packages("mvtnorm", repos = "http://cran.us.r-project.org") install.packages("parallel", repos = "http://cran.us.r-project.org") install.packages("randomForest", repos = "http://cran.us.r-project.org") install.packages("rmutil", repos = "http://cran.us.r-project.org") -install.packages("rphast", repos = "http://cran.us.r-project.org") +#install.packages("rphast", repos = "http://cran.us.r-project.org") install.packages("snowfall", repos = "http://cran.us.r-project.org") install.packages("devtools", repos = "http://cran.us.r-project.org") library(devtools) +# Install RPHAST via github since the CRAN package has been pulled. +devtools::install_github("CshlSiepelLab/RPHAST") # Here a bug in current devtools 1.12.0 if the installation starts from a sub-folder. r <- try( install_github("andrelmartins/bigWig", subdir="bigWig", force=TRUE) ) if ( class( r )== "try-error" )