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So, I got the data where I can see functional groups assigned based on FAPROTAX database. My question: is there any way to know specifically how much % of bacteria are assigned to specific group? For example, there was a group of CHEMOHETEROTROPHS based on FAPROTAX, but how do I know how much % of the bacteria/OTUs are assigned to that specific group? Thanks, |
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Answered by
ChiLiubio
Jun 9, 2023
Replies: 1 comment
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Hi. The cal_spe_func_perc function with the parameter
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Answer selected by
amrvx4
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Hi. The cal_spe_func_perc function with the parameter
abundance_weighted = FALSE
is used to get the % of OTUs/ASVs in each sample.