main.css

/* Global Stuff */
html,
body {
  width: 100%;
  height: 100%;
  margin: 0;
  padding: 0;
  overflow: hidden;
}
body {
  display: flex;
  justify-content: center;
  align-items: center;
  padding-top: 38px;
  background-color: #f8f9fa;
  -webkit-touch-callout: none; /* iOS Safari */
  -webkit-user-select: none; /* Safari */
  -khtml-user-select: none; /* Konqueror HTML */
  -moz-user-select: none; /* Firefox */
  -ms-user-select: none; /* Internet Explorer/Edge */
  user-select: none; /* Non-prefixed version, currently
                                supported by Chrome and Opera */
}
.selectable,
[type="text"] {
  -webkit-touch-callout: auto; /* iOS Safari */
  -webkit-user-select: auto; /* Safari */
  -khtml-user-select: auto; /* Konqueror HTML */
  -moz-user-select: auto; /* Firefox */
  -ms-user-select: auto; /* Internet Explorer/Edge */
  user-select: auto; /* Non-prefixed version, currently
                                supported by Chrome and Opera */
}
.navbar {
  padding: 0.25rem;
}
#search-form {
  display: none;
}
label[for="search"] {
  color: #555555;
}
#search {
  border-radius: 0.25rem 0 0 0.25rem;
}
#search-field {
  border-radius: 0 0.25rem 0.25rem 0;
  border-left: 0;
}
#main-panel {
  width: 100%;
  height: 100%;
  -webkit-transition: all 0.5s ease;
  -moz-transition: all 0.5s ease;
  -o-transition: all 0.5s ease;
  transition: all 0.5s ease;
}
a {
  color: #555555;
  text-decoration: none;
}
a:hover,
a:focus {
  color: #555555;
  text-decoration: none;
}
#ie-warning {
  display: none;
}
@media screen and (-ms-high-contrast: active),
  screen and (-ms-high-contrast: none) {
  #ie-warning {
    display: block;
    position: fixed;
    top: 0;
    bottom: 0;
    left: 0;
    right: 0;
    background-color: lightgray;
    padding: 150px;
    text-align: center;
    z-index: 1000000;
  }
}
.lm_header.lm_selectable {
  z-index: 1001 !important;
}
.lm_controls .lm_popout {
  display: none;
}
.view-controls button {
  border: 1px solid #cccccc;
}
.floater {
  border: 1px solid #cccccc;
  border-radius: 0.25rem;
}
.nodeVariables,
.linkVariables {
  width: 100%;
}
.export_button {
  position: absolute;
  top: 10px;
  left: 62px;
  border: 1px solid #cccccc;
}
svg#link-threshold-sparkline {
  width: 280px;
  height: 48px;
}
.left-pane {
  position: absolute;
  top: 0px;
  left: -400px;
  display: none;
  width: 400px;
  padding: 10px;
  background: #d5d5d5;
  z-index: 1000;
}
.left-pane .nav {
  padding-top: 40px;
}
.left-pane .active {
  background: #ffffff;
  border-width: 2px;
  border-color: #ffffff #ffffff transparent #ffffff;
}
.left-pane div.tab-content {
  background: #ffffff;
}
.ifOnline {
  display: none;
}
#tooltip {
  position: fixed;
  color: #333333;
  background-color: #f8f9fa !important;
  border: 1px solid #cccccc;
  border-radius: 0.25rem;
  padding: 0.25rem;
  opacity: 0;
  display: block;
  max-width: 160px;
  max-width: 20%;
  max-height: 20%;
  overflow-wrap: break-word;
  overflow-y: auto;
  z-index: 10000;
}
#link-color-table-wrapper {
  position: absolute;
  top: 73px;
  right: 10px;
  z-index: 999;
  max-height: 400px;
  overflow-y: scroll;
  overflow-x: hidden;
  border-radius: 0.25rem;
  color: #303030;
  background-color: #f8f9fa !important;
}
#link-color-table-draghandle {
  display: none;
  width: 100%;
  text-align: center;
}
#link-color-table th {
  text-align: center;
  border: 1px solid lightgray;
  padding: 4px;
}
#link-color-table td {
  border: 1px solid lightgray;
  padding: 4px;
}
#link-color-table input[type="color"] {
  background: transparent;
  border: none;
  padding: 0;
}
#node-color-table-wrapper {
  position: absolute;
  top: 483px;
  right: 10px;
  z-index: 999;
  max-height: 400px;
  overflow-y: scroll;
  overflow-x: hidden;
  border-radius: 0.25rem;
  color: #303030;
  background-color: #f8f9fa !important;
}
#node-color-table-draghandle {
  display: none;
  width: 100%;
  text-align: center;
}
#node-color-table th {
  text-align: center;
  border: 1px solid lightgray;
  padding: 4px;
}
#node-color-table td {
  border: 1px solid lightgray;
}
#node-color-table input[type="color"] {
  border: none;
  background: transparent;
}
#node-color-table select {
  background: none;
  border: none;
  -webkit-appearance: none;
  -moz-appearance: none;
  text-indent: 1px;
  text-overflow: "";
}
#polygon-color-table-wrapper {
  position: absolute;
  top: 73px;
  left: 10px;
  z-index: 999;
  max-height: 400px;
  overflow-y: scroll;
  overflow-x: hidden;
  border-radius: 0.25rem;
  color: #303030;
  background-color: #f8f9fa !important;
}
#polygon-color-table-draghandle {
  display: none;
  width: 100%;
  text-align: center;
}
#polygon-color-table th {
  text-align: center;
  border: 1px solid lightgray;
  padding: 4px;
}
#polygon-color-table td {
  border: 1px solid lightgray;
  padding: 4px;
}
#polygon-color-table input[type="color"] {
  background: transparent;
  border: none;
  padding: 0;
}
.polygonText {
  stroke: red;
}
#color-transparency-wrapper {
  display: none;
  position: absolute;
  z-index: 999;
  border-radius: 0.25rem;
  color: #303030;
  background-color: #f8f9fa !important;
  padding: 4px 8px;
  transform: rotate(270deg);
  transform-origin: top left;
}
#network-statistics-wrapper {
  display: none;
  position: absolute;
  bottom: 10px;
  right: 20px;
  z-index: 999;
  color: #303030;
  background-color: #f8f9fa !important;
  border: 1px solid #c0c0c0;
  border-radius: 0.25rem;
}
#network-statistics-draghandle {
  display: none;
  width: 100%;
  text-align: center;
}
#network-statistics-table td {
  border: none;
  padding: 0.125rem 0.25rem;
}

label[for="apply-style"] {
  width: calc(100% - 30px);
  margin: 0 15px;
}
.chosen-container-multi .chosen-choices {
  border-radius: 0.25rem;
  border: 1px solid #ced4da;
  background-image: none !important;
}
.btn-primary {
  background-color: #0037ff;
}

/* NAV BAR and Golden Layout */
.dropdown-toggle::after {
  content: none; /* Hides carats */
}
.lm_goldenlayout {
  background: #f8f9fa !important;
}
.lm_content {
  background: #ffffff;
}
.lm_selected .lm_header {
  background: #f8f9fa !important;
}
.lm_tab {
  color: #575858 !important;
  background-color: #888888;
  border-top-left-radius: 0.25rem;
  border-top-right-radius: 0.25rem;
}
.lm_tab.lm_active {
  background-color: #ffffff;
  box-shadow: none !important;
}
.tab-pane {
  border: 2px solid #ffffff;
  border-top: none;
  border-bottom-left-radius: 0.25rem;
  border-bottom-right-radius: 0.25rem;
  padding: 15px;
}
button.navbar-toggler {
  font-size: 1rem;
}
label[for="OpenTab"] {
  cursor: pointer;
}
#filtering-epsilon-row {
  display: none;
}

/* File Panel */
#file-panel {
  overflow-y: scroll;
  height: calc(100% - 68px);
  padding: 15px;
  padding-top: 40px;
  background-color: #ffffff;
}
#file-table {
  height: calc(100% - 50px);
}
#warning-prompt {
  text-align: center;
}
#file-prompt {
  text-align: center;
  padding-top: 25%;
}
.file-table-row {
  border: 1px solid rgba(0, 0, 0, 0.1);
  border-radius: 0.25rem;
  margin: 10px 0;
  background: #f8f9fa !important;
  padding: 15px;
}
.file-table-row .btn {
  background-color: #ffffff;
}
.filename {
  white-space: nowrap;
  overflow: hidden;
  text-overflow: ellipsis;
  margin: auto;
}
.filename span.oi-circle-x:hover {
  color: red;
}
td {
  overflow: hidden;
  text-overflow: ellipsis;
}
.custom-file-input {
  white-space: nowrap;
  overflow: hidden;
  text-overflow: ellipsis;
}
#alignment-preview {
  margin: 0 15px;
  padding: 0;
  min-height: 115px;
  max-height: 200px;
  overflow-x: scroll;
  overflow-y: auto;
}
#distance-metrics_chosen .chosen-choices {
  border: 1px solid #ced4da;
  border-radius: 0.25rem;
}
#loading-information {
  font-family: "Courier New", Courier, "Lucida Sans Typewriter",
    "Lucida Typewriter", monospace;
  font-size: 11px;
  font-style: normal;
  font-variant: normal;
  font-weight: 400;
  line-height: 23px;
  padding: 10px;
  white-space: pre-line;
}
.dna {
  margin: 40px auto;
  width: 360px;
  height: 70px;
  perspective: 466px;
  transform-style: preserve-3d;
}
.ele {
  width: 1px;
  height: 70px;
  float: left;
  margin: 0 8px;
  border-left: 1px #b0b0b0 dashed;
  position: relative;
  transform: rotateX(-360deg);
  animation: run 2s linear infinite;
}
.ele:before,
.ele:after {
  content: "";
  width: 10px;
  height: 10px;
  background: deepskyblue;
  border-radius: 50%;
  position: absolute;
  left: 50%;
  transform: translateX(-50%);
}
.ele:before {
  top: -2px;
  background: #000000;
}
.ele:after {
  bottom: -2px;
}
.ele:nth-of-type(1) {
  animation-delay: -0.15s;
}
.ele:nth-of-type(2) {
  animation-delay: -0.3s;
}
.ele:nth-of-type(3) {
  animation-delay: -0.45s;
}
.ele:nth-of-type(4) {
  animation-delay: -0.6s;
}
.ele:nth-of-type(5) {
  animation-delay: -0.75s;
}
.ele:nth-of-type(6) {
  animation-delay: -0.9s;
}
.ele:nth-of-type(7) {
  animation-delay: -1.05s;
}
.ele:nth-of-type(8) {
  animation-delay: -1.2s;
}
.ele:nth-of-type(9) {
  animation-delay: -1.35s;
}
.ele:nth-of-type(10) {
  animation-delay: -1.5s;
}
.ele:nth-of-type(11) {
  animation-delay: -1.65s;
}
.ele:nth-of-type(12) {
  animation-delay: -1.8s;
}
.ele:nth-of-type(13) {
  animation-delay: -1.95s;
}
.ele:nth-of-type(14) {
  animation-delay: -2.1s;
}
.ele:nth-of-type(15) {
  animation-delay: -2.25s;
}
.ele:nth-of-type(16) {
  animation-delay: -2.4s;
}
.ele:nth-of-type(17) {
  animation-delay: -2.55s;
}
.ele:nth-of-type(18) {
  animation-delay: -2.7s;
}
.ele:nth-of-type(19) {
  animation-delay: -2.85s;
}
.ele:nth-of-type(20) {
  animation-delay: -3s;
}

@keyframes run {
  to {
    transform: none;
  }
}
#loadCancelButton {
  display: none;
}
input[type="range"] {
  width: inherit;
}
a.btn,
button.btn,
.btn-group {
  border: 1px solid #ced4da;
  border-radius: 0.25rem;
}
#file-footer {
  background: #f8f9fa;
  border-top: 1px solid rgba(0, 0, 0, 0.1);
  position: absolute;
  left: 0px;
  bottom: 0px;
  right: 15px;
  z-index: 1030;
}
#global-settings-modal {
  pointer-events: none;
}
#global-settings-modal .modal-content {
  background: rgba(255, 255, 255, 0.8);
}
#global-timeline-wrapper {
  /* background: #f8f9fa; */
  border-top: 1px solid rgba(0, 0, 0, 0.1);
  position: absolute;
  left: 0px;
  bottom: 0px;
  right: 15px;
  z-index: 1001;
}

#timeline-play-button {
  position: absolute;
  top: 10px;
  left: 10px;
  background: #f08080;
  padding-right: 10px;
  border-radius: 3px;
  border: none;
  color: white;
  margin: 0;
  padding: 0 12px;
  width: 60px;
  cursor: pointer;
  height: 30px;
}
#global-timeline-field {
  padding: 4px;
  font-size: 1.25em;
}
#timeline-play:hover {
  background-color: #696969;
}    
.track,
.track-inset,
.track-overlay {
  stroke-linecap: round;
}
.track {
  stroke: #000;
  stroke-opacity: 0.3;
  stroke-width: 10px;
}
.track-inset {
  stroke: #dcdcdc;
  stroke-width: 8px;
}
.track-overlay {
  pointer-events: stroke;
  stroke-width: 50px;
  stroke: transparent;
  cursor: crosshair;
}
.handle {
  fill: #fff;
  stroke: #000;
  stroke-opacity: 0.5;
  stroke-width: 1.25px;
}

/* 2D NETWORK */
#network {
  width: 100%;
  height: 100%;
}
#node-symbol-table-wrapper {
  position: absolute;
  top: 457px;
  left: 10px;
  z-index: 999;
  max-height: 400px;
  overflow-y: scroll;
  overflow-x: hidden;
  border-radius: 0.25rem;
  color: #303030;
  background-color: #f8f9fa !important;
}
#node-symbol-table-draghandle {
  display: none;
  width: 100%;
  text-align: center;
}
#node-symbol-table th {
  border: 1px solid lightgray;
  padding: 4px;
  text-align: center;
}
#node-symbol-table td {
  border: 1px solid lightgray;
  padding: 4px;
}
#node-symbol-table select {
  border: none;
  background: transparent;
}
.nodes path {
  cursor: -webkit-grab;
}

.clusters path {
  cursor: -webkit-grab;
}

.nodes path.selected {
  stroke: #ff8300;
  stroke-width: 4px;
}
.brush .extent {
  fill-opacity: 0.1;
  stroke: #ffffff;
  shape-rendering: crispEdges;
}
.btn-default {
  background-color: #f8f9fa;
}
.view-controls {
  position: absolute;
  top: 10px;
  left: 10px;
  z-index: 1001;
}
#attributeModal .modal-body {
  max-height: 600px;
  padding: 0;
}
#attributeModal .table {
  font-family: monospace;
  margin: 0;
}
#node-label-row {
  display: none;
}
#node-max-radius-row, #node-min-radius-row {
  display: none;
}
#link-reciprocalthickness-row {
  display: none;
}
#link-max-width-row, #link-min-width-row {
  display: none;
}
.watermark {
  font: bold 20px sans-serif;
}

/* 3D Network */
.graph-nav-info {
  display: none;
}
.three-dee-node-tooltip {
  color:#333333;
  background:#f5f5f5;
  border:1px solid #cccccc;
  border-radius:.25rem;
  padding:.25rem;
}

/* FLOW DIAGRAM */
#flow {
  margin: 15px;
  margin-top: 50px;
  height: calc(100% - 65px);
}
#flow-variables {
  padding-left: 0;
}
.flow-items {
  list-style-type: none;
}
.flow-selector {
  width: calc(100% - 47px);
  margin: 5px;
}

/* MAP */
#map {
  width: 100%;
  height: 100%;
  background: #d3d9db;
  cursor: -webkit-grab;
}
#map:hover:active {
  cursor: hold;
}
#map-nodes circle.selected {
  stroke: #ff8300;
  stroke-width: 4px;
  /* stroke-dasharray: 6, 13;
  animation-duration: 1s;
  animation-name: ripple;
  animation-iteration-count: infinite;
  animation-timing-function: linear; */
}
.leaflet-control-attribution {
  display: none;
}

/* Sequences */
#sequences-panel {
  padding: 10px;
  padding-top: 50px;
  height: 100%;
  cursor: grab;
}

/* Phylogenetic tree */
#tree {
  height: 100%;
  width: 100%;
}

#tree_tooltip {
  color: #fff;
  position: absolute;
  padding: 20px;
  max-width: 200px;

  /* need i.e. rule */
  background-color: rgba(0, 0, 0, 0.85);
  -webkit-border-radius: 12px;
  -moz-border-radius: 12px;
  border-radius: 12px;
  display: none;
}

.tidytree-link path {
  stroke: rgba(0, 0, 0, 0.6);
}

/* Table */
#table {
  height: 100% !important;
  padding-top: 50px;
  border: none;
}

/* Gantt */
#gantt-settings-pane {
  left: 0px;
  display: block;
}

/* Timeline */
#timeline {
  padding-top: 50px;
}
#timeline .axis--grid .domain {
  fill: #ddd;
  stroke: none;
}

#timeline .axis--x .domain,
#timeline .axis--grid .tick line {
  stroke: #fff;
}

#timeline .axis--grid .tick--minor line {
  stroke-opacity: 0.5;
}
#timeline-date-field {
  width: auto;
}

/* Waterfall View */
#waterfall {
  padding: 30px;
  height: 100%;
}
#waterfall h4 {
  padding: 0.75rem 1.25rem;
  border: 1px solid lightgray;
  border-radius: 0.25rem;
  background: white;
  margin-bottom: 0;
}
.hideIfNotActive {
  display: none;
}
.active .hideIfNotActive {
  display: block;
  width: 100%;
  overflow: hidden;
  white-space: nowrap;
  text-overflow: ellipsis;
}
.ellipsisToFit {
  text-overflow: ellipsis;
  display: inline;
  overflow: hidden;
  white-space: nowrap;
}

/* Bubbles View */
#bubble-view circle.selected {
  stroke: #ff8300;
  stroke-width: 4px;
  /* stroke-dasharray: 6, 13;
  animation-duration: 1s;
  animation-name: ripple;
  animation-iteration-count: infinite;
  animation-timing-function: linear; */
}

/* Auditor */
#auditor-panel {
  padding-top: 50px;
}

/* Aggregation */
#aggregation {
  width: calc(100% - 20px);
  margin: 10px;
  margin-top: 50px;
}
#aggregation-variables {
  padding-left: 0;
}
.aggregation-items {
  list-style-type: none;
}
.aggregation-variable {
  width: calc(100% - 47px);
  margin: 5px;
}
.aggregation-tables {
  margin-bottom: 10px;
}

#help-panel {
  height: 100%;
  overflow-y: scroll;
}

#help-panel nav {
  position: absolute;
  width: 100%;
  padding-right: 15px;
}

#help-panel .container {
  padding-top: 48px;
}

#help-footer {
  background-color: #e9ecef;
  text-align: center;
}

/* Globe View */
#globe {
  width: 100%;
  height: 100%;
  background-color: #000;
}

/* Choropleth */

.legend canvas {
  opacity: 0.7;
}

/* Crosstab */
#crosstab {
  height: calc(100% - 50px) !important;
  width: calc(100% - 20px);
  margin: 50px 10px 0 10px;
  border: 1px solid #ced4da;
  border-radius: 0.25rem;
}

/* Physics Tree */
#physics-tree {
  width: 100%;
  height: 100%;
}
#physics-tree g.links link {
  stroke: gray;
}
#physics-tree g.nodes g circle {
  cursor: grab;
}
#tooltip table, td {
  border:1px solid #cccccc;
  border-radius:.25rem;
}
/* Search */
.autocomplete-wrapper {
  position: relative;
  border: solid 1px #EEE;
  padding: 1px 2px;
  font-family: 'Verdana', sans-serif;
}
.autocomplete-wrapper #search {
    padding: 0;
    margin: 0;
    width: 100%;
    font-size: 13px;
}
.autocomplete-wrapper #search:focus {
    outline: 0;
}
.autocomplete-wrapper #search-results {
    display: none;
    position: absolute;
    top: 36px;
    left: -1px;
    right: -1px;
    border: solid 1px #CCC;
    min-height: 50px;
    max-height: 200px;
    overflow: scroll;
    list-style: none;
    padding: 2px;
    background: white;
}
.autocomplete-wrapper #search-results li {
      padding: 5px;
      margin: 0;
      font-size: 13px;
}
.autocomplete-wrapper #search-results li:hover {
        background: #EEE;
        cursor: pointer;
}