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index.js
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$(function() {
"use strict";
let linkKeyboardPositionEnabled = false;
let nodeKeyboardPositionEnabled = false;
let statsKeyboardPositionEnabled = false;
if (navigator.userAgent.indexOf("MSIE") >= 0 || navigator.appName.indexOf("Microsoft Internet Explorer") >= 0) {
$("#ie-warning").show();
throw new Error("MicrobeTrace does not work on Internet Explorer.");
} else {
$("#ie-warning").remove();
}
// Before anything else gets done, ask the user to accept the legal agreement
localforage.getItem("licenseAccepted").then(accepted => {
if (!accepted) {
$("#acceptAgreement").on("click", () => {
localforage.setItem("licenseAccepted", new Date());
});
$("#licenseAgreement").modal({
backdrop: "static",
keyboard: false
});
}
})
if ("serviceWorker" in navigator) {
navigator.serviceWorker.register("sw.js").catch(error => {
console.error("Service Worker Registration failed with " + error);
});
}
self.temp = MT.tempSkeleton();
self.session = MT.sessionSkeleton();
self.layout = new GoldenLayout({
settings: {
selectionEnabled: true,
showPopoutIcon: false
},
content: [
{
type: "stack",
content: []
}
]
}, $("#main-panel"));
layout.init();
layout.contentItems = [];
self.$window = $(window);
$(".modal-header").on("mousedown", function(){
let body = $("body");
let parent = $(this).parent().parent().parent();
body.on("mousemove", e => {
parent
.css("top", parseFloat(parent.css("top" )) + e.originalEvent.movementY + "px")
.css("left",parseFloat(parent.css("left")) + e.originalEvent.movementX + "px");
});
body.on("mouseup", () => body.off("mousemove").off("mouseup"));
});
// Let's set up the Nav Bar
$("#stash-data").on("click", () => {
localforage.setItem(
"stash-" + Date.now() + "-" + $("#stash-name").val(),
JSON.stringify(session)
).then(() => alertify.success("Session Stashed Successfully!"));
});
let table = new Tabulator("#recall-stashes-available", {
height: "100%",
layout: "fitColumns",
selectable: 1,
columns: [
{ title: "Name", field: "name" },
{ title: "Date", field: "date", align: "right", sorter: "date" }
]
});
function updateTable() {
let rows = [];
localforage.keys().then(keys => {
keys.forEach(k => {
if (k.substring(0, 5) !== "stash") return;
rows.push({
fullname: k,
name: k.substring(20),
date: new Date(parseFloat(k.substring(6, 19))).toISOString()
});
});
table.setData(rows);
});
}
$("#RecallDataTab").on("click", e => {
e.preventDefault();
updateTable();
$("#session-recall-modal").modal("show");
});
$("#recall-delete-stash").on("click", () => {
let key = table.getSelectedData()[0].fullname;
localforage.removeItem(key).then(() => {
updateTable();
alertify.success("That stash has been deleted.");
});
});
$("#recall-load-stash").on("click", () => {
let key = table.getSelectedData()[0].fullname;
localforage.getItem(key).then(json => {
MT.applySession(JSON.parse(json));
$("#session-recall-modal").modal("hide");
});
});
$("#save-data").on("click", () => {
let zip = new JSZip();
let name = $("#save-file-name").val();
let format = $("#save-file-format").val();
let data;
if (format == "style") {
data = JSON.stringify(session.style);
} else if (format == "hivtrace") {
data = MT.exportHIVTRACE();
} else {
if ($('#save-file-cluster').is(":checked")){
// it is checked
let clusterNodeList = [];
let clusterLinkList = [];
let singletonNodeList = [];
let dyadNodeList = [];
let dyadEdgeList = [];
let nodes = session.data.nodes;
let links = session.data.links;
session.data.clusters.forEach(cluster => {
console.log('cluster: ', cluster);
let clusterNodes = nodes.filter(node => node.cluster === cluster.id);
let clusterLinks = links.filter(link => link.cluster === cluster.id);
// We have a singleton - all singletons go into one file
if(clusterNodes.length == 1){
singletonNodeList.push(clusterNodes[0]);
// We have a dyad - all dyads go into one file
} else if (clusterNodes.length == 2) {
// Add both nodes
dyadNodeList.push(clusterNodes[0]);
dyadNodeList.push(clusterNodes[1]);
// Add the single link
dyadEdgeList.push(clusterLinks[0]);
// We have a cluster
} else {
// Add array object of nodes with matching cluster
clusterNodeList.push(clusterNodes);
// Add array object of links with matching cluster
clusterLinkList.push(clusterLinks);
}
});
let singletonFolder = null;
let dyadFolder = null;
for (var i = 0; i < session.data.clusters.length; i++) {
let currentCluster = session.data.clusters[i];
let cluster = clusterNodeList.filter(nodeList => nodeList[0].cluster == currentCluster.id);
// Check if cluster is in clusterNodesList
if(cluster.length > 0){
console.log('creating cluster');
// Create cluster folder
var clusterFolder = zip.folder("cluster-" + cluster[0][0].cluster);
// If node and edge lists exists, add them to the current folder
if(clusterNodeList[i]) {
let blob = new Blob([Papa.unparse(cluster[0])], {type: 'text/csv;charset=utf-8'});
clusterFolder.file("nodeList.csv", blob);
}
let clusterLink = clusterLinkList.filter(LinkList => LinkList[0].cluster == currentCluster.id);
if(clusterLink) {
let blob = new Blob([Papa.unparse(clusterLink[0])], {type: 'text/csv;charset=utf-8'});
clusterFolder.file("edgeList.csv", blob);
}
}
}
if(dyadNodeList.length > 0){
dyadFolder = zip.folder("dyads");
// Add all dyads in one shot
let nodesBlob = new Blob([Papa.unparse(dyadNodeList)], {type: 'text/csv;charset=utf-8'});
dyadFolder.file("nodeList.csv", nodesBlob);
let edgesBlob = new Blob([Papa.unparse(dyadEdgeList)], {type: 'text/csv;charset=utf-8'});
dyadFolder.file("edgeList.csv", edgesBlob);
}
if (singletonNodeList.length > 0) {
singletonFolder = zip.folder("singletons");
// Add all singletons in one shot
let blob = new Blob([Papa.unparse(singletonNodeList)], {type: 'text/csv;charset=utf-8'});
singletonFolder.file("nodeList.csv", blob);
}
// generate zip repsetnation in memory
zip.generateAsync({type:"blob"}).then(function(content) {
// see FileSaver.js
saveAs(content, name);
});
// End function
return;
} else {
data = JSON.stringify(session);
}
}
if (format == 'session') {
format = 'microbetrace';
}
if ($("#save-file-compress").is(":checked")) {
zip.file(name + "." + format, data);
zip
.generateAsync({
type: "blob",
compression: "DEFLATE",
compressionOptions: {
level: 9
}
})
.then(content => saveAs(content, name + ".zip"));
} else {
let blob = new Blob([data], { type: "application/json;charset=utf-8" });
saveAs(blob, name + "." + format);
}
});
$("#save-file-cluster").on("change", function(){
if ($('#save-file-cluster').is(":checked")){
$("#save-file-compress").attr("disabled", true);
console.log('disabled');
} else {
$("#save-file-compress").removeAttr("disabled");
}
});
$("#save-file-format").on("change", function(){
// Ensure compress is not disabled if format has been switched to style
if ($('#save-file-format').val() == 'style'){
$("#save-file-compress").removeAttr("disabled");
$("#cluster-checkbox-container").hide(true);
} else {
$('#save-file-cluster').prop('checked', false);
$("#cluster-checkbox-container").show(true);
}
});
$("#OpenTab").on("change", function(){
if (this.files.length > 0) {
let extension = this.files[0].name
.split(".")
.pop()
.toLowerCase();
if (extension == "zip") {
let new_zip = new JSZip();
new_zip.loadAsync(this.files[0]).then(zip => {
zip.forEach((relativePath, zipEntry) => {
extension = zipEntry.name.split(".").pop();
zipEntry.async("string").then(c => {
MT.processJSON(c, extension);
});
});
});
} else {
let reader = new FileReader();
reader.onloadend = out => MT.processJSON(out.target.result, extension);
reader.readAsText(this.files[0], "UTF-8");
}
}
});
$("#AddDataTab").on("click", e => {
e.preventDefault();
//$("#network-statistics-hide").trigger("click");
MT.launchView("files");
});
$("#NewTab").on("click", e => {
e.preventDefault();
$("#exit-modal").modal();
});
$("#exit-button").on("click", MT.reset);
$(".viewbutton").on("click", function(e){
e.preventDefault();
MT.launchView($(this).data("href"))
});
$("#ReloadTab").on("click", e => {
e.preventDefault();
$("#exit-button").on("click", () => window.location.reload());
$("#exit-modal").modal();
});
$("#FullScreenTab").on("click", e => {
e.preventDefault();
screenfull.toggle();
});
let updateNetwork = () => {
MT.setLinkVisibility(true);
MT.tagClusters().then(() => {
MT.setClusterVisibility(true);
MT.setLinkVisibility(true);
MT.setNodeVisibility(true);
["cluster", "link", "node"].forEach(thing => $window.trigger(thing + "-visibility"));
MT.updateStatistics();
});
};
$("#link-show-all")
.parent()
.on("click", () => {
$("#filtering-epsilon-row").slideUp();
session.style.widgets["link-show-nn"] = false;
updateNetwork();
});
$("#link-show-nn")
.parent()
.on("click", () => {
ga('send', 'event', 'nearest-neighbor', 'trigger', 'on');
$("#filtering-epsilon-copy").val(
Math.pow(10, parseFloat($("#filtering-epsilon").val())).toLocaleString()
);
$("#filtering-epsilon-row").css("display", "flex");
session.style.widgets["link-show-nn"] = true;
MT.computeMST(session.style.widgets["default-distance-metric"]).then(updateNetwork);
//updateNetwork();
});
$("#filtering-epsilon")
.on("input", () => {
$("#filtering-epsilon-copy").val(
Math.pow(10, parseFloat(this.value)).toLocaleString()
);
})
.on("change", function() {
session.style.widgets["filtering-epsilon"] = parseFloat(this.value);
$("#filtering-epsilon-copy").val(
Math.pow(10, parseFloat(this.value)).toLocaleString()
);
// MT.computeNN(session.style.widgets["default-distance-metric"]).then(updateNetwork);
MT.computeMST(session.style.widgets["default-distance-metric"]).then(updateNetwork);
});
$("#cluster-minimum-size").on("change", function() {
let val = parseInt(this.value);
session.style.widgets["cluster-minimum-size"] = val;
MT.setClusterVisibility(true);
MT.setLinkVisibility(true);
MT.setNodeVisibility(true);
["cluster", "link", "node"].forEach(thing => {
$window.trigger(thing + "-visibility");
});
MT.updateStatistics();
if (val > 1) {
$("#filtering-wrapper").slideUp();
} else {
$("#filtering-wrapper").slideDown();
}
});
MT.updateThresholdHistogram = () => {
let width = 280,
height = 48,
svg = d3
.select("svg#link-threshold-sparkline")
.html(null)
.attr("width", width)
.attr("height", height);
let lsv = session.style.widgets["link-sort-variable"],
n = session.data.links.length,
max = Number.MIN_SAFE_INTEGER,
min = Number.MAX_SAFE_INTEGER,
data = Array(n),
dist = null;
for (let i = 0; i < n; i++) {
dist = parseFloat(session.data.links[i][lsv]);
data[i] = dist;
if (dist < min) min = dist;
if (dist > max) max = dist;
}
let range = max - min;
let ticks = 40;
let x = d3
.scaleLinear()
.domain([min, max])
.range([0, width]);
let bins = d3
.histogram()
.domain(x.domain())
.thresholds(x.ticks(ticks))(data);
let y = d3
.scaleLinear()
.domain([0, d3.max(bins, d => d.length)])
.range([height, 0]);
let bar = svg
.selectAll(".bar")
.data(bins)
.enter()
.append("g")
.attr("class", "bar")
.attr("transform", d => "translate(" + x(d.x0) + "," + y(d.length) + ")");
bar
.append("rect")
.attr("x", 1)
.attr("width", 6)
.attr("height", d => height - y(d.length));
function updateThreshold() {
let xc = d3.mouse(svg.node())[0];
session.style.widgets["link-threshold"] = (xc / width) * range * 1.05 + min;
$("#link-threshold").val(parseFloat(session.style.widgets["link-threshold"].toLocaleString()));
}
svg.on("click", () => {
updateThreshold();
updateNetwork();
});
svg.on("mousedown", () => {
d3.event.preventDefault();
svg.on("mousemove", updateThreshold);
svg.on("mouseup mouseleave", () => {
updateNetwork();
svg
.on("mousemove", null)
.on("mouseup", null)
.on("mouseleave", null);
});
});
};
$("#link-sort-variable").on("change", function() {
session.style.widgets["link-sort-variable"] = this.value;
MT.updateThresholdHistogram();
updateNetwork();
});
$("#link-threshold").on("change", function() {
ga('send', 'event', 'threshold', 'update', this.value);
session.style.widgets["link-threshold"] = parseFloat(this.value);
MT.setLinkVisibility(true);
MT.tagClusters().then(() => {
MT.setClusterVisibility(true);
//To catch links that should be filtered out based on cluster size:
MT.setLinkVisibility(true);
MT.setNodeVisibility(true);
//Because the network isn't robust to the order in which these operations
//take place, we just do them all silently and then react as though we did
//them each after all of them are already done.
["cluster", "link", "node"].forEach(thing => $window.trigger(thing + "-visibility"));
MT.updateStatistics();
});
});
$("#network-statistics-show")
.parent()
.on("click", () => {
MT.updateStatistics();
$("#network-statistics-wrapper").fadeIn();
});
$("#network-statistics-hide")
.parent()
.on("click", () => {
$("#network-statistics-wrapper").fadeOut();
});
$("#network-statistics-wrapper").on("contextmenu", e => {
e.preventDefault();
$("#network-statistics-context").css({
top: e.clientY,
left: e.clientX,
display: "block"
});
});
$("#hideStats").on("click", function() {
$(this).parent().hide();
$("#network-statistics-hide").parent().trigger('click');
});
$("#moveStats").on("click", function() {
let $this = $(this);
$this.parent().hide();
if ($this.text() == "Drag/Arrow Keys") {
$("#network-statistics-draghandle").slideDown();
statsKeyboardPositionEnabled = true;
$this.text("Pin");
} else {
$("#network-statistics-draghandle").slideUp();
statsKeyboardPositionEnabled = false;
$this.text("Drag/Arrow Keys");
}
});
$("#network-statistics-draghandle").on("mousedown", function() {
let body = $("body");
let parent = $(this).parent();
body.on("mousemove", e => {
parent
.css("bottom", parseFloat(parent.css("bottom")) - e.originalEvent.movementY + "px")
.css("right" , parseFloat(parent.css("right" )) - e.originalEvent.movementX + "px");
});
body.on("mouseup", () => body.off("mousemove").off("mouseup"));
});
$("#RevealAllTab").on("click", () => {
$("#cluster-minimum-size").val(1);
session.style.widgets["cluster-minimum-size"] = 1;
$("#filtering-wrapper").slideDown();
MT.setClusterVisibility();
MT.setNodeVisibility();
MT.setLinkVisibility();
MT.updateStatistics();
});
MT.tabulate = (data, columns, wrapper, container) => {
let foreignObj = d3.select(container).append("svg:foreignObject")
.attr("x", wrapper.offsetLeft)
.attr("y", wrapper.offsetTop-60)
.attr("width", wrapper.offsetWidth)
.attr("height", wrapper.offsetHeight);
let body = foreignObj
.append("xhtml:body")
.append("table")
.style('position', 'absolute')
.style('top', '0')
.style('width', '100%')
.style('height', '100%')
.attr('cellpadding', '1px')
.attr("class", "table-bordered");
// .html(nodeColorTable.innerHTML); SVG doesn't translate
let thead = body.append("thead"),
tbody = body.append("tbody");
thead.append("tr")
.selectAll("th")
.data(columns)
.enter()
.append("th")
.text(function(column) { return column; });
let rows = tbody.selectAll("tr")
.data(data)
.enter()
.append("tr");
let cells = rows.selectAll("td")
.data(function(row) {
return columns.map(function(column) {
return {column: column, value: row[column.split(" ")[0]]};
});
})
.enter()
.append("td")
.html(function(d) { return d.value; });
return foreignObj;
}
$("#node-color-variable")
.val(session.style.widgets["node-color-variable"])
.on("change", function() {
let variable = this.value;
session.style.widgets["node-color-variable"] = variable;
if (variable == "None") {
$("#node-color-value-row").slideDown();
$("#node-color-table-row").slideUp();
$("#node-color-table").empty();
$window.trigger("node-color-change");
return;
}
$("#node-color-value-row").slideUp();
$("#node-color-table-row").slideDown();
let nodeSort = $("<a style='cursor: pointer;'>⇅</a>").on("click", e => {
session.style.widgets["node-color-table-counts-sort"] = "";
if (session.style.widgets["node-color-table-name-sort"] === "ASC")
session.style.widgets["node-color-table-name-sort"] = "DESC"
else
session.style.widgets["node-color-table-name-sort"] = "ASC"
$('#node-color-variable').trigger("change");
});
let nodeColorHeaderTitle = (session.style.overwrite && session.style.overwrite.nodeColorHeaderVariable == variable ? session.style.overwrite.nodeColorHeaderTitle : "Node " + MT.titleize(variable));
let nodeHeader = $("<th class='p-1' contenteditable>" + nodeColorHeaderTitle + "</th>").append(nodeSort);
let countSort = $("<a style='cursor: pointer;'>⇅</a>").on("click", e => {
session.style.widgets["node-color-table-name-sort"] = "";
if (session.style.widgets["node-color-table-counts-sort"] === "ASC")
session.style.widgets["node-color-table-counts-sort"] = "DESC"
else
session.style.widgets["node-color-table-counts-sort"] = "ASC"
$('#node-color-variable').trigger("change");
});
let countHeader = $((session.style.widgets["node-color-table-counts"] ? "<th>Count</th>" : "")).append(countSort);
let nodeColorTable = $("#node-color-table")
.empty()
.append($("<tr></tr>"))
.append(nodeHeader)
.append(countHeader)
.append((session.style.widgets["node-color-table-frequencies"] ? "<th>Frequency</th>" : ""))
.append("<th>Color</th>" );
if (!session.style.nodeValueNames) session.style.nodeValueNames = {};
let aggregates = MT.createNodeColorMap();
let vnodes = MT.getVisibleNodes();
let values = Object.keys(aggregates);
if (isNaN(values[0])) { // String sorting
if (session.style.widgets["node-color-table-name-sort"] == "ASC")
values.sort();
else if (session.style.widgets["node-color-table-name-sort"] == "DESC")
values.sort(function(a, b) { if (a > b) return -1; if (b > a) return 1; return 0; });
} else { // Number sorting
if (session.style.widgets["node-color-table-name-sort"] == "ASC")
values.sort(function(a, b) { return a - b });
else if (session.style.widgets["node-color-table-name-sort"] == "DESC")
values.sort(function(a, b) { return b - a });
}
if (session.style.widgets["node-color-table-counts-sort"] == "ASC")
values.sort(function(a, b) { return aggregates[a] - aggregates[b] });
else if (session.style.widgets["node-color-table-counts-sort"] == "DESC")
values.sort(function(a, b) { return aggregates[b] - aggregates[a] });
values.forEach((value, i) => {
let colorinput = $('<input type="color" value="' + temp.style.nodeColorMap(value) + '">')
.on("change", function(){
let key = session.style.nodeColorsTableKeys[variable].findIndex( k => k === value);
session.style.nodeColorsTable[variable].splice(key, 1, this.value);
if (session.style.widgets["node-timeline-variable"] == 'None') {
temp.style.nodeColorMap = d3
.scaleOrdinal(session.style.nodeColorsTable[variable])
.domain(session.style.nodeColorsTableKeys[variable]);
} else {
let temKey = temp.style.nodeColorKeys.findIndex( k => k === value);
temp.style.nodeColor.splice(temKey, 1, this.value);
temp.style.nodeColorMap = d3
.scaleOrdinal(temp.style.nodeColor)
.domain(temp.style.nodeColorKeys);
}
$window.trigger("node-color-change");
});
let alphainput = $("<a>⇳</a>").on("click", e => {
$("#color-transparency-wrapper").css({
top: e.clientY + 129,
left: e.clientX,
display: "block"
});
$("#color-transparency")
.val(session.style.nodeAlphas[i])
.one("change", function() {
session.style.nodeAlphas.splice(i, 1, parseFloat(this.value));
temp.style.nodeAlphaMap = d3
.scaleOrdinal(session.style.nodeAlphas)
.domain(values);
$("#color-transparency-wrapper").fadeOut();
$window.trigger("node-color-change");
});
});
let cell = $("<td></td>")
.append(colorinput)
.append(alphainput);
let row = $(
"<tr>" +
"<td data-value='" + value + "'>" +
(session.style.nodeValueNames[value] ? session.style.nodeValueNames[value] : MT.titleize("" + value)) +
"</td>" +
(session.style.widgets["node-color-table-counts"] ? "<td>" + aggregates[value] + "</td>" : "") +
(session.style.widgets["node-color-table-frequencies"] ? "<td>" + (aggregates[value] / vnodes.length).toLocaleString() + "</td>" : "") +
"</tr>"
).append(cell);
nodeColorTable.append(row);
});
nodeColorTable
.find("td")
.on("dblclick", function() {
$(this).attr("contenteditable", true).focus();
})
.on("focusout", function() {
let $this = $(this);
$this.attr("contenteditable", false);
session.style.nodeValueNames[$this.data("value")] = $this.text();
});
nodeColorTable
.find(".p-1")
.on("focusout", function() {
//#295
session.style.overwrite.nodeColorHeaderVariable = session.style.widgets["node-color-variable"];
session.style.overwrite.nodeColorHeaderTitle = $($(this).contents()[0]).text();
});
sortable("#node-color-table", { items: "tr" });
$window.trigger("node-color-change");
})
.trigger("change");
$("#node-color")
.on("change", function() {
session.style.widgets["node-color"] = this.value;
$window.trigger("node-color-change");
})
.val(session.style.widgets["node-color"]);
$("#node-color-border")
.on("change", function() {
session.style.widgets["node-color-border"] = this.value;
$window.trigger("node-border-change");
});
$("#link-color-variable")
.val(session.style.widgets["link-color-variable"])
.on("change", function() {
let variable = this.value;
session.style.widgets["link-color-variable"] = variable;
if (variable == "None") {
$("#link-color-value-row").slideDown();
$("#link-color-table-row").slideUp();
$("#link-color-table").empty();
$window.trigger("link-color-change");
return;
}
$("#link-color-value-row").slideUp();
$("#link-color-table-row").slideDown();
let linkSort = $("<a style='cursor: pointer;'>⇅</a>").on("click", e => {
session.style.widgets["link-color-table-counts-sort"] = "";
if (session.style.widgets["link-color-table-name-sort"] === "ASC")
session.style.widgets["link-color-table-name-sort"] = "DESC"
else
session.style.widgets["link-color-table-name-sort"] = "ASC"
$('#link-color-variable').trigger("change");
});
let linkColorHeaderTitle = (session.style.overwrite && session.style.overwrite.linkColorHeaderVariable == variable ? session.style.overwrite.linkColorHeaderTitle : "Link " + MT.titleize(variable));
let linkHeader = $("<th class='p-1' contenteditable>" + linkColorHeaderTitle + "</th>").append(linkSort);
let countSort = $("<a style='cursor: pointer;'>⇅</a>").on("click", e => {
session.style.widgets["link-color-table-name-sort"] = "";
if (session.style.widgets["link-color-table-counts-sort"] === "ASC")
session.style.widgets["link-color-table-counts-sort"] = "DESC"
else
session.style.widgets["link-color-table-counts-sort"] = "ASC"
$('#link-color-variable').trigger("change");
});
let countHeader = $((session.style.widgets["link-color-table-counts"] ? "<th>Count</th>" : "")).append(countSort);
let linkColorTable = $("#link-color-table")
.empty()
.append($("<tr></tr>"))
.append(linkHeader)
.append(countHeader)
.append((session.style.widgets["link-color-table-frequencies"] ? "<th>Frequency</th>" : ""))
.append("<th>Color</th>" );
if (!session.style.linkValueNames) session.style.linkValueNames = {};
let aggregates = MT.createLinkColorMap();
let vlinks = MT.getVisibleLinks();
let values = Object.keys(aggregates);
if (isNaN(values[0])) { // String sorting
if (session.style.widgets["link-color-table-name-sort"] == "ASC")
values.sort();
else if (session.style.widgets["link-color-table-name-sort"] == "DESC")
values.sort(function(a, b) { if (a > b) return -1; if (b > a) return 1; return 0; });
} else {
if (session.style.widgets["link-color-table-name-sort"] == "ASC")
values.sort(function(a, b) { return a - b });
else if (session.style.widgets["link-color-table-name-sort"] == "DESC")
values.sort(function(a, b) { return b - a });
}
if (session.style.widgets["link-color-table-counts-sort"] == "ASC")
values.sort(function(a, b) { return aggregates[a] - aggregates[b] });
else if (session.style.widgets["link-color-table-counts-sort"] == "DESC")
values.sort(function(a, b) { return aggregates[b] - aggregates[a] });
values.forEach((value, i) => {
let colorinput = $('<input type="color" value="' + temp.style.linkColorMap(value) + '">')
.on("change", function(){
let key = session.style.linkColorsTableKeys[variable].findIndex( k => k === value);
session.style.linkColorsTable[variable].splice(key, 1, this.value);
if (session.style.widgets["node-timeline-variable"] == 'None') {
temp.style.linkColorMap = d3
.scaleOrdinal(session.style.linkColorsTable[variable])
.domain(session.style.linkColorsTableKeys[variable]);
} else {
let temKey = temp.style.linkColorsKeys.findIndex( k => k === value);
temp.style.linkColor.splice(temKey, 1, this.value);
temp.style.linkColorMap = d3
.scaleOrdinal(temp.style.linkColor)
.domain(temp.style.linkColorsKeys);
}
$window.trigger("link-color-change");
});
let alphainput = $("<a>⇳</a>")
.on("click", e => {
$("#color-transparency-wrapper").css({
top: e.clientY + 129,
left: e.clientX,
display: "block"
});
$("#color-transparency")
.val(session.style.linkAlphas[i])
.one("change", function() {
session.style.linkAlphas.splice(i, 1, parseFloat(this.value));
temp.style.linkAlphaMap = d3
.scaleOrdinal(session.style.linkAlphas)
.domain(values);
$("#color-transparency-wrapper").fadeOut();
$window.trigger("link-color-change");
});
});
let row = $(
"<tr>" +
"<td data-value='" + value + "'>" +
(session.style.linkValueNames[value] ? session.style.linkValueNames[value] : MT.titleize("" + value)) +
"</td>" +
(session.style.widgets["link-color-table-counts"] ? "<td>" + aggregates[value] + "</td>" : "") +
(session.style.widgets["link-color-table-frequencies"] ? "<td>" + (aggregates[value] / vlinks.length).toLocaleString() + "</td>" : "") +
"</tr>"
);
row.append($("<td></td>").append(colorinput).append(alphainput));
linkColorTable.append(row);
});
linkColorTable
.find("td")
.on("dblclick", function() {
$(this).attr("contenteditable", true).focus();
})
.on("focusout", function() {
let $this = $(this);
$this.attr("contenteditable", false);
session.style.linkValueNames[$this.data("value")] = $this.text();
});
linkColorTable
.find(".p-1")
.on("focusout", function() {
//#295
session.style.overwrite.linkColorHeaderVariable = session.style.widgets["link-color-variable"];
session.style.overwrite.linkColorHeaderTitle = $($(this).contents()[0]).text();
});
sortable("#link-color-table", { items: "tr" });
$window.trigger("link-color-change");
})
.trigger("change");
$("#node-timeline-variable")
.val(session.style.widgets["node-timeline-variable"])
.on("change", function() {
d3.select('#global-timeline svg').remove();
clearInterval(session.timeline);
let variable = this.value;
let loadingJsonFile = session.style.widgets["node-timeline-variable"] == variable;
if (session.style.widgets["node-timeline-variable"] != 'None' && !loadingJsonFile) {
// change timeline variable when end time not reaching target time - redraw netwrok to start fresh
if (moment(session.state.timeEnd).toDate() < moment(session.state.timeTarget).toDate()) {
session.state.timeEnd = session.state.timeTarget;
MT.setNodeVisibility(false);
MT.setLinkVisibility(false);
MT.updateStatistics();
}
}
session.style.widgets["node-timeline-variable"] = variable;
if (variable == "None") {
$("#global-timeline-field").empty();
session.style.widgets["timeline-date-field"] = 'None'
$("#global-timeline-wrapper").fadeOut();
$('#pinbutton').prop("disabled", false);
if(!session.network.timelinePinned) {
$('#pinbutton').trigger('click');
MT.updatePinNodes(false);
}
session.network.timelineNodes = [];
MT.setNodeVisibility(false);
MT.setLinkVisibility(false);
MT.updateStatistics();
return;
}
if(!temp.style.nodeColor) $("#node-color-variable").trigger("change");
if (!$('#pinbutton').prop('disabled')){
if (!loadingJsonFile) {
session.network.timelinePinned= session.network.allPinned;
if(!session.network.allPinned) {
MT.updatePinNodes(true);
$('#pinbutton').trigger('click');
}
session.network.timelineNodes = MT.getNetworkNodes();
}
$('#pinbutton').prop("disabled", true);
}
let globalTimelineField = (session.style.overwrite && variable == session.style.overwrite.globalTimelineFieldVariable ? session.style.overwrite.globalTimelineField : MT.titleize(variable));
$("#global-timeline-field").html(globalTimelineField);
var formatDateIntoYear = d3.timeFormat("%Y");
var formatDateIntoMonthYear = d3.timeFormat("%b %y");
var formatDateIntoMonth = d3.timeFormat("%b");
var formatDateMonthYear = d3.timeFormat("%b %Y");
var formatDateDateMonth = d3.timeFormat("%b %_d");
let timeDomainStart, timeDomainEnd;
let field = variable;
let times = [],
vnodes = JSON.parse(JSON.stringify(session.data.nodes));
vnodes.forEach(d => {
let time = moment(d[field]);
if (time.isValid()) {
d[field] = time.toDate();
times.push(d[field]);
} else {
d[field] = null;
}
});
if (times.length < 2) {
times = [new Date(2000, 1, 1), new Date()];
}
timeDomainStart = Math.min(...times);
timeDomainEnd = Math.max(...times);
var days = moment(timeDomainEnd).diff(moment(timeDomainStart), 'days');
var tickDateFormat = d => {
if (days<184) return formatDateDateMonth(d);
else if (days<367) return formatDateIntoMonth(d);
else if (days<367*5) return formatDateIntoMonthYear(d);
else return formatDateIntoYear(d);
}
var handleDateFormat = d => {
if (days<367) return formatDateDateMonth(d);
else return formatDateMonthYear(d);
}
let startDate = timeDomainStart;
let endDate = timeDomainEnd;
var margin = {top:50, right:50, bottom:0, left:50},
width = ($('#network').parent().width() * 4 / 5) - margin.left - margin.right,
height = 200 - margin.top - margin.bottom;
var svgTimeline = d3.select("#global-timeline")
.append("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", 120);
////////// slider //////////
var currentValue = 0;
var targetValue = width;
var playButton = d3.select("#timeline-play-button");
if (playButton.text() == "Pause") playButton.text("Play");
var x = d3.scaleTime()
.domain([startDate, endDate])
.range([0, targetValue])
.clamp(true)
.nice();
var slider = svgTimeline.append("g")
.attr("class", "slider")
.attr("transform", "translate(30," + height/2 + ")");
slider.append("line")
.attr("class", "track")
.attr("x1", x.range()[0])
.attr("x2", x.range()[1])
.select(function() { return this.parentNode.appendChild(this.cloneNode(true)); })
.attr("class", "track-inset")
.select(function() { return this.parentNode.appendChild(this.cloneNode(true)); })