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Turn off/catch VTK debug statements #152

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durack1 opened this issue Mar 22, 2017 · 6 comments
Open

Turn off/catch VTK debug statements #152

durack1 opened this issue Mar 22, 2017 · 6 comments
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@danlipsa @scottwittenburg
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enhancement low Low Priority bug (but not enhancement)
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8.2

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@durack1
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durack1 commented Mar 22, 2017 •
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@doutriaux1 @danlipsa FYI, with missing (no data) I am getting the following error:

Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479229648549/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x3043b80): Number of cells is zero, no data to process.

For the release it would be great to turn these useless debug statements off (as they are pointing to the conda-bld directory, and have nothing to do with the local conda-installed environment), or even better catch them with a better, more meaningful warning for users.

The path above does nothing more to confuse the hell out of people, as /export/doutriaux1/.. is very unlikely going to exist on their systems
@durack1 durack1 changed the title Turn off/catch debug statements Turn off/catch VTK debug statements Mar 22, 2017
@danlipsa
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@durack1 What script are you using to get this?

@durack1
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durack1 commented Mar 23, 2017

@danlipsa I can wrap this and the data up for you and send through if you like?

@danlipsa
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@durack1 Yes, please do that. If it fits, it would be best to attach the data and the script to this issue. Thanks.

@durack1
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durack1 commented Mar 23, 2017

@danlipsa the attached (below) should get you the error/warning:

Warning: In /export/doutriaux1/miniconda2/conda-bld/vtk-cdat_1489522072123/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 167
vtkDataSetSurfaceFilter (0x39299b0): Number of cells is zero, no data to process.

You'll need to create a PMP install, the conda command-line will generate this:

conda create -n PMP-noxNightly2VTKgt2017p3 -c conda-forge -c uvcdat/label/nightly -c uvcdat -c pcmdi/label/nightly pcmdi_metrics-nox "vtk-cdat-nox>7.1.0.2017.3"

170323_VTK-CWarningNumberOfCellsIsZero.zip

Unwrapping the archive above and executing portrait-4seas-demo.py should give you the identical warning.. This is on a linux-64 (redhat6) machine

@durack1
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durack1 commented Apr 14, 2017

@doutriaux1 @danlipsa I am still getting these with vcs=2017.4.13.45a557da7342271fffe9e78821b1515568c264dd-0 and vtk-cdat=7.1.0.2.8-py27_2:

Python 2.7.13 | packaged by conda-forge | (default, Mar 20 2017, 14:04:17)
Type "copyright", "credits" or "license" for more information.
IPython 5.3.0 -- An enhanced Interactive Python.
?         -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help      -> Python's own help system.
object?   -> Details about 'object', use 'object??' for extra details.
In [1]: import vcs
In [2]: f = 'CMIP6/input4MIPs/PCMDI/SSTsAndSeaIce/CMIP/fx/ocean/PCMDI-AMIP-1-1-2/sftof/gn/v20170414/sftof_Ofx_SSTsAndSeaIce_CMIP_PCMDI-A
   ...: MIP-1-1-2_gn.nc'
In [3]: import cdms2 as cdm
In [4]: fH = cdm.open(f)
In [5]: var = fH('sftof')
In [6]: x = vcs.init()
In [7]: x.meshfill(var)
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x3e6b150): Number of cells is zero, no data to process.
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x4105e60): Number of cells is zero, no data to process.
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x4111eb0): Number of cells is zero, no data to process.
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x3e90fb0): Number of cells is zero, no data to process.
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x3e9cf30): Number of cells is zero, no data to process.
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x3ea90b0): Number of cells is zero, no data to process.
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x3ecbf70): Number of cells is zero, no data to process.
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x3ed7f10): Number of cells is zero, no data to process.
Out[7]: <vcs.displayplot.Dp at 0x7fef1b665e88>
In [8]: x.close()

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durack1 commented Apr 20, 2017

@doutriaux1 @danlipsa this is still an issue in vtk-cdat-vtk-cdat-7.1.0.2.8-py27_2 and vcs-vcs-2017.4.14.bb3046c4e649eac3bade859046d56c12eaf38644-0:

In [9]: x.meshfill(basinmask3)
/export/durack1/anaconda2/envs/uvcdatNightly/lib/python2.7/site-packages/numpy/ma/core.py:3337: MaskedArrayFutureWarning: setting an item on a masked array which has a shared mask will not copy the mask and also change the original mask array in the future.
Check the NumPy 1.11 release notes for more information.
  self.__setitem__(slice(i, j), value)
Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x99b2400): Number of cells is zero, no data to process.

Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x7efcbe0): Number of cells is zero, no data to process.

Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x92a8790): Number of cells is zero, no data to process.

Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x5636e40): Number of cells is zero, no data to process.

Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x12e1fe70): Number of cells is zero, no data to process.

Warning: In /export/doutriaux1/anaconda2/conda-bld/vtk-cdat_1479230506328/work/Filters/Geometry/vtkDataSetSurfaceFilter.cxx, line 166
vtkDataSetSurfaceFilter (0x12e2c110): Number of cells is zero, no data to process.

@doutriaux1 doutriaux1 modified the milestone: 3.0 May 5, 2017
@doutriaux1 doutriaux1 modified the milestones: 3.0, post 3.0 Mar 29, 2018
@doutriaux1 doutriaux1 modified the milestones: 8.1, 8.2 Mar 27, 2019
@doutriaux1 doutriaux1 added enhancement low Low Priority bug (but not enhancement) labels Apr 18, 2019
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