notebooks.json

{
    "applications": [
        {
            "name": "Mouse_Nuclei",
            "description": "Denoising of 2D fluorescence images of nuclei with Noise2Void.",
            "cover": "MouseNuclei_Noise2Void.jpeg",
            "source": "applications/n2v/2D/MouseNuclei_Noise2Void.ipynb",
            "destination": "Noise2Void",
            "tags": "2D, fluorescence"
        },
        {
            "name": "SEM",
            "description": "Denoising of 2D scanning electron microscopy with Noise2Void.",
            "cover": "SEM_Noise2Void.jpeg",
            "source": "applications/n2v/2D/SEM_Noise2Void.ipynb",
            "destination": "Noise2Void",
            "tags": "2D, electron microscopy"
        },
        {
            "name": "SEM",
            "description": "Denoising of 2D scanning electron microscopy with N2V2.",
            "cover": "SEM_N2V2.jpeg",
            "source": "applications/n2v/2D/SEM_N2V2.ipynb",
            "destination": "N2V2",
            "tags": "2D, electron microscopy"
        },
        {
            "name": "Hagen",
            "description": "N2V on the AI4Life Denoising Challenge with structured noise.",
            "cover": "Hagen_N2V.jpeg",
            "source": "applications/n2v/2D/Hagen_N2V.ipynb",
            "destination": "Noise2Void",
            "tags": "2D, fluorescence, structured"
        },
        {
            "name": "Flywing",
            "description": "Denoising of 3D tissue using Noise2Void.",
            "cover": "Flywing_N2V.jpeg",
            "source": "applications/n2v/3D/Flywing_Noise2Void.ipynb",
            "destination": "Noise2Void",
            "tags": "3D, fluorescence, tissue"
        },
        {
            "name": "SUPPORT",
            "description": "N2V on the AI4Life Denoising Challenge with structured noise.",
            "cover": "SUPPORT_N2V.jpeg",
            "source": "applications/n2v/3D/SUPPORT_N2V.ipynb",
            "destination": "Noise2Void",
            "tags": "3D, fluorescence, structured"
        },
        {
            "name": "JUMP",
            "description": "N2V on the AI4Life Denoising Challenge with unstructured noise.",
            "cover": "JUMP_N2V.jpeg",
            "source": "applications/n2v/channels/JUMP_N2V.ipynb",
            "destination": "Noise2Void",
            "tags": "2D, channels, fluorescence"
        },
        {
            "name": "W2S",
            "description": "N2V on the AI4Life Denoising Challenge with unstructured noise.",
            "cover": "W2S_N2V.jpeg",
            "source": "applications/n2v/channels/W2S_N2V.ipynb",
            "destination": "Noise2Void",
            "tags": "2D, channels, fluorescence"
        },
        {
            "name": "BSD68",
            "description": "Benchmark Noise2Void in 2D using natural images and synthetic noise.",
            "cover": "BSD68_Noise2Void.jpeg",
            "source": "applications/n2v/2D/BSD68_Noise2Void.ipynb",
            "destination": "Noise2Void",
            "tags": "2D, benchmark"
        },
        {
            "name": "BSD68",
            "description": "Benchmark N2V2 in 2D using natural images and synthetic noise.",
            "cover": "BSD68_N2V2.jpeg",
            "source": "applications/n2v/2D/BSD68_N2V2.ipynb",
            "destination": "N2V2",
            "tags": "2D, benchmark"
        },
        {
            "name": "Convallaria",
            "description": "An example of using structN2V on the convallaria dataset.",
            "cover": "Convallaria_structN2V.jpeg",
            "source": "applications/n2v/2D/Convallaria_structN2V.ipynb",
            "destination": "structN2V",
            "tags": "2D, fluorescence, structN2V"
        },
        {
            "name": "SEM",
            "description": "Denoising of 2D scanning electron microscopy with Noise2Noise.",
            "cover": "SEM_Noise2Noise.jpeg",
            "source": "applications/n2n/2D/SEM_Noise2Noise.ipynb",
            "destination": "Noise2Noise",
            "tags": "2D, electron microscopy"
        },
        {
            "name": "denoising_U2OS",
            "description": "Supervised denoising of nuclei imaged in 2D fluorescence with CARE.",
            "cover": "U2OS_CARE.jpeg",
            "source": "applications/care/denoising/2D/U2OS_CARE.ipynb",
            "destination": "CARE",
            "tags": "2D, fluorescence, nuclei"
        },
        {
            "name": "BSD68_N2V",
            "description": "Example of Noise2Void using the Lightning API with 2D natural images and synthetic noise.",
            "cover": "BSD68_Noise2Void_lightning_api.jpeg",
            "source": "applications/lightning_api/2D/BSD68_Noise2Void_lightning_api.ipynb",
            "destination": "Lightning_API",
            "tags": "2D, benchmark, N2V"
        }
    ],
    "algorithms": [
        {
            "name": "Noise2Void",
            "source": "algorithms/n2v/Noise2Void.ipynb"
        },
        {
            "name": "N2V2",
            "source": "algorithms/n2v2/N2V2.ipynb"
        },
        {
            "name": "structN2V",
            "source": "algorithms/structn2v/structN2V.ipynb"
        },
        {
            "name": "NoiseModels",
            "source": "algorithms/noise_models/NoiseModels.ipynb"
        }
    ]
}