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+152,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:45.622069Z", - "iopub.status.busy": "2024-09-25T08:45:45.621871Z", - "iopub.status.idle": "2024-09-25T08:45:46.411849Z", - "shell.execute_reply": "2024-09-25T08:45:46.411046Z" + "iopub.execute_input": "2024-09-25T09:15:49.556355Z", + "iopub.status.busy": "2024-09-25T09:15:49.555801Z", + "iopub.status.idle": "2024-09-25T09:15:50.343005Z", + "shell.execute_reply": "2024-09-25T09:15:50.342251Z" } }, "outputs": [], @@ -169,10 +169,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.414562Z", - "iopub.status.busy": "2024-09-25T08:45:46.414137Z", - "iopub.status.idle": "2024-09-25T08:45:46.444072Z", - "shell.execute_reply": "2024-09-25T08:45:46.443451Z" + "iopub.execute_input": "2024-09-25T09:15:50.345696Z", + "iopub.status.busy": "2024-09-25T09:15:50.345262Z", + "iopub.status.idle": "2024-09-25T09:15:50.375768Z", + "shell.execute_reply": "2024-09-25T09:15:50.375151Z" } }, "outputs": [], @@ -277,10 +277,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.446292Z", - "iopub.status.busy": "2024-09-25T08:45:46.445984Z", - "iopub.status.idle": "2024-09-25T08:45:46.451003Z", - "shell.execute_reply": "2024-09-25T08:45:46.450294Z" + "iopub.execute_input": "2024-09-25T09:15:50.378083Z", + "iopub.status.busy": "2024-09-25T09:15:50.377681Z", + "iopub.status.idle": "2024-09-25T09:15:50.382367Z", + "shell.execute_reply": "2024-09-25T09:15:50.381709Z" } }, "outputs": [ @@ -323,10 +323,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.481066Z", - "iopub.status.busy": "2024-09-25T08:45:46.480613Z", - "iopub.status.idle": "2024-09-25T08:45:46.484671Z", - "shell.execute_reply": "2024-09-25T08:45:46.484112Z" + "iopub.execute_input": "2024-09-25T09:15:50.412543Z", + "iopub.status.busy": "2024-09-25T09:15:50.412117Z", + "iopub.status.idle": "2024-09-25T09:15:50.416069Z", + "shell.execute_reply": "2024-09-25T09:15:50.415492Z" } }, "outputs": [ @@ -367,10 +367,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.486598Z", - "iopub.status.busy": "2024-09-25T08:45:46.486221Z", - "iopub.status.idle": "2024-09-25T08:45:46.489687Z", - "shell.execute_reply": "2024-09-25T08:45:46.489133Z" + "iopub.execute_input": "2024-09-25T09:15:50.418207Z", + "iopub.status.busy": "2024-09-25T09:15:50.417825Z", + "iopub.status.idle": "2024-09-25T09:15:50.421623Z", + "shell.execute_reply": "2024-09-25T09:15:50.420874Z" }, "scrolled": true }, @@ -412,10 +412,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.491829Z", - "iopub.status.busy": "2024-09-25T08:45:46.491449Z", - "iopub.status.idle": "2024-09-25T08:45:46.495183Z", - "shell.execute_reply": "2024-09-25T08:45:46.494533Z" + "iopub.execute_input": "2024-09-25T09:15:50.423539Z", + "iopub.status.busy": "2024-09-25T09:15:50.423342Z", + "iopub.status.idle": "2024-09-25T09:15:50.427126Z", + "shell.execute_reply": "2024-09-25T09:15:50.426554Z" }, "scrolled": true }, @@ -459,10 +459,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.497230Z", - "iopub.status.busy": "2024-09-25T08:45:46.496860Z", - "iopub.status.idle": "2024-09-25T08:45:46.500957Z", - "shell.execute_reply": "2024-09-25T08:45:46.500415Z" + "iopub.execute_input": "2024-09-25T09:15:50.428932Z", + "iopub.status.busy": "2024-09-25T09:15:50.428735Z", + "iopub.status.idle": "2024-09-25T09:15:50.433215Z", + "shell.execute_reply": "2024-09-25T09:15:50.432660Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb index 4c6e59b56..578b42a83 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb @@ -30,10 +30,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:51.800599Z", - "iopub.status.busy": "2024-09-25T08:45:51.800053Z", - "iopub.status.idle": "2024-09-25T08:45:52.581601Z", - "shell.execute_reply": "2024-09-25T08:45:52.580853Z" + "iopub.execute_input": "2024-09-25T09:15:59.107978Z", + "iopub.status.busy": "2024-09-25T09:15:59.107783Z", + "iopub.status.idle": "2024-09-25T09:15:59.894510Z", + "shell.execute_reply": "2024-09-25T09:15:59.893623Z" } }, "outputs": [], @@ -63,10 +63,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.584366Z", - "iopub.status.busy": "2024-09-25T08:45:52.583950Z", - "iopub.status.idle": "2024-09-25T08:45:52.612592Z", - "shell.execute_reply": "2024-09-25T08:45:52.611981Z" + "iopub.execute_input": "2024-09-25T09:15:59.897211Z", + "iopub.status.busy": "2024-09-25T09:15:59.896970Z", + "iopub.status.idle": "2024-09-25T09:15:59.925717Z", + "shell.execute_reply": "2024-09-25T09:15:59.924963Z" } }, "outputs": [], @@ -86,10 +86,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.614765Z", - "iopub.status.busy": "2024-09-25T08:45:52.614359Z", - "iopub.status.idle": "2024-09-25T08:45:52.617828Z", - "shell.execute_reply": "2024-09-25T08:45:52.617289Z" + "iopub.execute_input": "2024-09-25T09:15:59.928294Z", + "iopub.status.busy": "2024-09-25T09:15:59.927717Z", + "iopub.status.idle": "2024-09-25T09:15:59.931479Z", + "shell.execute_reply": "2024-09-25T09:15:59.930957Z" } }, "outputs": [], @@ -152,10 +152,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.619825Z", - "iopub.status.busy": "2024-09-25T08:45:52.619526Z", - "iopub.status.idle": "2024-09-25T08:45:52.623160Z", - "shell.execute_reply": "2024-09-25T08:45:52.622598Z" + "iopub.execute_input": "2024-09-25T09:15:59.933700Z", + "iopub.status.busy": "2024-09-25T09:15:59.933230Z", + "iopub.status.idle": "2024-09-25T09:15:59.936876Z", + "shell.execute_reply": "2024-09-25T09:15:59.936342Z" } }, "outputs": [], @@ -183,10 +183,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.625377Z", - "iopub.status.busy": "2024-09-25T08:45:52.624930Z", - "iopub.status.idle": "2024-09-25T08:45:52.628241Z", - "shell.execute_reply": "2024-09-25T08:45:52.627606Z" + "iopub.execute_input": "2024-09-25T09:15:59.938925Z", + "iopub.status.busy": "2024-09-25T09:15:59.938554Z", + "iopub.status.idle": "2024-09-25T09:15:59.942343Z", + "shell.execute_reply": "2024-09-25T09:15:59.941784Z" } }, "outputs": [ @@ -235,10 +235,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.630343Z", - "iopub.status.busy": "2024-09-25T08:45:52.629973Z", - "iopub.status.idle": "2024-09-25T08:45:52.633831Z", - "shell.execute_reply": "2024-09-25T08:45:52.633205Z" + "iopub.execute_input": "2024-09-25T09:15:59.944582Z", + "iopub.status.busy": "2024-09-25T09:15:59.944064Z", + "iopub.status.idle": "2024-09-25T09:15:59.948204Z", + "shell.execute_reply": "2024-09-25T09:15:59.947575Z" } }, "outputs": [], @@ -260,10 +260,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.635963Z", - "iopub.status.busy": "2024-09-25T08:45:52.635594Z", - "iopub.status.idle": "2024-09-25T08:45:52.639018Z", - "shell.execute_reply": "2024-09-25T08:45:52.638455Z" + "iopub.execute_input": "2024-09-25T09:15:59.950372Z", + "iopub.status.busy": "2024-09-25T09:15:59.949989Z", + "iopub.status.idle": "2024-09-25T09:15:59.953348Z", + "shell.execute_reply": "2024-09-25T09:15:59.952733Z" } }, "outputs": [ @@ -297,10 +297,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.641275Z", - "iopub.status.busy": "2024-09-25T08:45:52.640805Z", - "iopub.status.idle": "2024-09-25T08:45:52.648014Z", - "shell.execute_reply": "2024-09-25T08:45:52.647460Z" + "iopub.execute_input": "2024-09-25T09:15:59.955440Z", + "iopub.status.busy": "2024-09-25T09:15:59.955066Z", + "iopub.status.idle": "2024-09-25T09:15:59.962094Z", + "shell.execute_reply": "2024-09-25T09:15:59.961558Z" } }, "outputs": [ @@ -365,10 +365,10 @@ "execution_count": 9, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.650142Z", - "iopub.status.busy": "2024-09-25T08:45:52.649663Z", - "iopub.status.idle": "2024-09-25T08:45:52.654024Z", - "shell.execute_reply": "2024-09-25T08:45:52.653475Z" + "iopub.execute_input": "2024-09-25T09:15:59.964024Z", + "iopub.status.busy": "2024-09-25T09:15:59.963640Z", + "iopub.status.idle": "2024-09-25T09:15:59.967963Z", + "shell.execute_reply": "2024-09-25T09:15:59.967389Z" } }, "outputs": [ @@ -416,10 +416,10 @@ "execution_count": 10, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.656221Z", - "iopub.status.busy": "2024-09-25T08:45:52.655760Z", - "iopub.status.idle": "2024-09-25T08:45:52.659112Z", - "shell.execute_reply": "2024-09-25T08:45:52.658468Z" + "iopub.execute_input": "2024-09-25T09:15:59.970125Z", + "iopub.status.busy": "2024-09-25T09:15:59.969761Z", + "iopub.status.idle": "2024-09-25T09:15:59.973106Z", + "shell.execute_reply": "2024-09-25T09:15:59.972446Z" } }, "outputs": [], @@ -441,10 +441,10 @@ "execution_count": 11, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.661134Z", - "iopub.status.busy": "2024-09-25T08:45:52.660826Z", - "iopub.status.idle": "2024-09-25T08:45:52.664762Z", - "shell.execute_reply": "2024-09-25T08:45:52.664210Z" + "iopub.execute_input": "2024-09-25T09:15:59.975117Z", + "iopub.status.busy": "2024-09-25T09:15:59.974741Z", + "iopub.status.idle": "2024-09-25T09:15:59.978330Z", + "shell.execute_reply": "2024-09-25T09:15:59.977699Z" } }, "outputs": [ @@ -510,10 +510,10 @@ "execution_count": 12, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.666788Z", - "iopub.status.busy": "2024-09-25T08:45:52.666416Z", - "iopub.status.idle": "2024-09-25T08:45:52.669563Z", - "shell.execute_reply": "2024-09-25T08:45:52.669031Z" + "iopub.execute_input": "2024-09-25T09:15:59.980332Z", + "iopub.status.busy": "2024-09-25T09:15:59.979969Z", + "iopub.status.idle": "2024-09-25T09:15:59.983345Z", + "shell.execute_reply": "2024-09-25T09:15:59.982718Z" } }, "outputs": [ @@ -548,10 +548,10 @@ "execution_count": 13, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.671650Z", - "iopub.status.busy": "2024-09-25T08:45:52.671277Z", - "iopub.status.idle": "2024-09-25T08:45:52.674470Z", - "shell.execute_reply": "2024-09-25T08:45:52.673886Z" + "iopub.execute_input": "2024-09-25T09:15:59.985401Z", + "iopub.status.busy": "2024-09-25T09:15:59.985057Z", + "iopub.status.idle": "2024-09-25T09:15:59.988522Z", + "shell.execute_reply": "2024-09-25T09:15:59.987893Z" } }, "outputs": [ @@ -584,10 +584,10 @@ "execution_count": 14, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.676440Z", - "iopub.status.busy": "2024-09-25T08:45:52.676078Z", - "iopub.status.idle": "2024-09-25T08:45:52.679468Z", - "shell.execute_reply": "2024-09-25T08:45:52.678928Z" + "iopub.execute_input": "2024-09-25T09:15:59.990538Z", + "iopub.status.busy": "2024-09-25T09:15:59.990148Z", + "iopub.status.idle": "2024-09-25T09:15:59.993860Z", + "shell.execute_reply": "2024-09-25T09:15:59.993199Z" } }, "outputs": [ @@ -622,10 +622,10 @@ "execution_count": 15, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.681496Z", - "iopub.status.busy": "2024-09-25T08:45:52.681115Z", - "iopub.status.idle": "2024-09-25T08:45:52.685447Z", - "shell.execute_reply": "2024-09-25T08:45:52.684876Z" + "iopub.execute_input": "2024-09-25T09:15:59.995821Z", + "iopub.status.busy": "2024-09-25T09:15:59.995518Z", + "iopub.status.idle": "2024-09-25T09:15:59.999652Z", + "shell.execute_reply": "2024-09-25T09:15:59.998983Z" } }, "outputs": [ @@ -669,10 +669,10 @@ "execution_count": 16, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.687552Z", - "iopub.status.busy": "2024-09-25T08:45:52.687173Z", - "iopub.status.idle": "2024-09-25T08:45:52.692260Z", - "shell.execute_reply": "2024-09-25T08:45:52.691728Z" + "iopub.execute_input": "2024-09-25T09:16:00.001752Z", + "iopub.status.busy": "2024-09-25T09:16:00.001408Z", + "iopub.status.idle": "2024-09-25T09:16:00.006357Z", + "shell.execute_reply": "2024-09-25T09:16:00.005704Z" } }, "outputs": [ @@ -733,10 +733,10 @@ "execution_count": 17, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.694330Z", - "iopub.status.busy": "2024-09-25T08:45:52.693856Z", - "iopub.status.idle": "2024-09-25T08:45:52.697549Z", - "shell.execute_reply": "2024-09-25T08:45:52.696887Z" + "iopub.execute_input": "2024-09-25T09:16:00.008337Z", + "iopub.status.busy": "2024-09-25T09:16:00.008016Z", + "iopub.status.idle": "2024-09-25T09:16:00.011635Z", + "shell.execute_reply": "2024-09-25T09:16:00.010993Z" } }, "outputs": [], @@ -761,10 +761,10 @@ "execution_count": 18, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.699694Z", - "iopub.status.busy": "2024-09-25T08:45:52.699346Z", - "iopub.status.idle": "2024-09-25T08:45:52.709322Z", - "shell.execute_reply": "2024-09-25T08:45:52.708763Z" + "iopub.execute_input": "2024-09-25T09:16:00.013843Z", + "iopub.status.busy": "2024-09-25T09:16:00.013450Z", + "iopub.status.idle": "2024-09-25T09:16:00.023683Z", + "shell.execute_reply": "2024-09-25T09:16:00.023139Z" } }, "outputs": [], @@ -857,10 +857,10 @@ "execution_count": 19, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.711253Z", - "iopub.status.busy": "2024-09-25T08:45:52.710853Z", - "iopub.status.idle": "2024-09-25T08:45:52.714489Z", - "shell.execute_reply": "2024-09-25T08:45:52.713830Z" + "iopub.execute_input": "2024-09-25T09:16:00.025680Z", + "iopub.status.busy": "2024-09-25T09:16:00.025298Z", + "iopub.status.idle": "2024-09-25T09:16:00.028814Z", + "shell.execute_reply": "2024-09-25T09:16:00.028188Z" } }, "outputs": [ @@ -897,10 +897,10 @@ "execution_count": 20, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.716986Z", - "iopub.status.busy": "2024-09-25T08:45:52.716316Z", - "iopub.status.idle": "2024-09-25T08:45:52.721844Z", - "shell.execute_reply": "2024-09-25T08:45:52.721318Z" + "iopub.execute_input": "2024-09-25T09:16:00.030869Z", + "iopub.status.busy": "2024-09-25T09:16:00.030485Z", + "iopub.status.idle": "2024-09-25T09:16:00.036228Z", + "shell.execute_reply": "2024-09-25T09:16:00.035660Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb index d243321cb..352b5a411 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb @@ -86,10 +86,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:55.097945Z", - "iopub.status.busy": "2024-09-25T08:45:55.097753Z", - "iopub.status.idle": "2024-09-25T08:45:55.876445Z", - "shell.execute_reply": "2024-09-25T08:45:55.875571Z" + "iopub.execute_input": "2024-09-25T09:16:02.353631Z", + "iopub.status.busy": "2024-09-25T09:16:02.353449Z", + "iopub.status.idle": "2024-09-25T09:16:03.142630Z", + "shell.execute_reply": "2024-09-25T09:16:03.141707Z" } }, "outputs": [], @@ -103,10 +103,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:55.879106Z", - "iopub.status.busy": "2024-09-25T08:45:55.878877Z", - "iopub.status.idle": "2024-09-25T08:45:55.909309Z", - "shell.execute_reply": "2024-09-25T08:45:55.908599Z" + "iopub.execute_input": "2024-09-25T09:16:03.145165Z", + "iopub.status.busy": "2024-09-25T09:16:03.144953Z", + "iopub.status.idle": "2024-09-25T09:16:03.175734Z", + "shell.execute_reply": "2024-09-25T09:16:03.174984Z" } }, "outputs": [], @@ -149,10 +149,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:55.911661Z", - "iopub.status.busy": "2024-09-25T08:45:55.911329Z", - "iopub.status.idle": "2024-09-25T08:45:56.177292Z", - "shell.execute_reply": "2024-09-25T08:45:56.176574Z" + "iopub.execute_input": "2024-09-25T09:16:03.178115Z", + "iopub.status.busy": "2024-09-25T09:16:03.177906Z", + "iopub.status.idle": "2024-09-25T09:16:03.469921Z", + "shell.execute_reply": "2024-09-25T09:16:03.469207Z" } }, "outputs": [ @@ -196,10 +196,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.179622Z", - "iopub.status.busy": "2024-09-25T08:45:56.179207Z", - "iopub.status.idle": "2024-09-25T08:45:56.308917Z", - "shell.execute_reply": "2024-09-25T08:45:56.308334Z" + "iopub.execute_input": "2024-09-25T09:16:03.472300Z", + "iopub.status.busy": "2024-09-25T09:16:03.471857Z", + "iopub.status.idle": "2024-09-25T09:16:03.602987Z", + "shell.execute_reply": "2024-09-25T09:16:03.602369Z" } }, "outputs": [ @@ -243,10 +243,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.311087Z", - "iopub.status.busy": "2024-09-25T08:45:56.310578Z", - "iopub.status.idle": "2024-09-25T08:45:56.318669Z", - "shell.execute_reply": "2024-09-25T08:45:56.318035Z" + "iopub.execute_input": "2024-09-25T09:16:03.605247Z", + "iopub.status.busy": "2024-09-25T09:16:03.604857Z", + "iopub.status.idle": "2024-09-25T09:16:03.612716Z", + "shell.execute_reply": "2024-09-25T09:16:03.612198Z" } }, "outputs": [ @@ -290,10 +290,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.320772Z", - "iopub.status.busy": "2024-09-25T08:45:56.320333Z", - "iopub.status.idle": "2024-09-25T08:45:56.336612Z", - "shell.execute_reply": "2024-09-25T08:45:56.336079Z" + "iopub.execute_input": "2024-09-25T09:16:03.614643Z", + "iopub.status.busy": "2024-09-25T09:16:03.614295Z", + "iopub.status.idle": "2024-09-25T09:16:03.631304Z", + "shell.execute_reply": "2024-09-25T09:16:03.630617Z" } }, "outputs": [ @@ -337,10 +337,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.338719Z", - "iopub.status.busy": "2024-09-25T08:45:56.338299Z", - "iopub.status.idle": "2024-09-25T08:45:56.455337Z", - "shell.execute_reply": "2024-09-25T08:45:56.454760Z" + "iopub.execute_input": "2024-09-25T09:16:03.633402Z", + "iopub.status.busy": "2024-09-25T09:16:03.633186Z", + "iopub.status.idle": "2024-09-25T09:16:03.752590Z", + "shell.execute_reply": "2024-09-25T09:16:03.751923Z" } }, "outputs": [ @@ -400,10 +400,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.457102Z", - "iopub.status.busy": "2024-09-25T08:45:56.456909Z", - "iopub.status.idle": "2024-09-25T08:45:56.554469Z", - "shell.execute_reply": "2024-09-25T08:45:56.553786Z" + "iopub.execute_input": "2024-09-25T09:16:03.754498Z", + "iopub.status.busy": "2024-09-25T09:16:03.754291Z", + "iopub.status.idle": "2024-09-25T09:16:03.849854Z", + "shell.execute_reply": "2024-09-25T09:16:03.849188Z" } }, "outputs": [ @@ -456,10 +456,10 @@ "execution_count": 9, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.556461Z", - "iopub.status.busy": "2024-09-25T08:45:56.556264Z", - "iopub.status.idle": "2024-09-25T08:45:56.639423Z", - "shell.execute_reply": "2024-09-25T08:45:56.638853Z" + "iopub.execute_input": "2024-09-25T09:16:03.851782Z", + "iopub.status.busy": "2024-09-25T09:16:03.851581Z", + "iopub.status.idle": "2024-09-25T09:16:03.924267Z", + "shell.execute_reply": "2024-09-25T09:16:03.923573Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb index 0d45e9af8..5eff9f6c7 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb @@ -62,10 +62,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:58.321712Z", - "iopub.status.busy": "2024-09-25T08:45:58.321521Z", - "iopub.status.idle": "2024-09-25T08:45:59.104607Z", - "shell.execute_reply": "2024-09-25T08:45:59.103799Z" + "iopub.execute_input": "2024-09-25T09:16:05.624610Z", + "iopub.status.busy": "2024-09-25T09:16:05.624429Z", + "iopub.status.idle": "2024-09-25T09:16:06.415116Z", + "shell.execute_reply": "2024-09-25T09:16:06.414289Z" } }, "outputs": [], @@ -79,10 +79,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.107010Z", - "iopub.status.busy": "2024-09-25T08:45:59.106780Z", - "iopub.status.idle": "2024-09-25T08:45:59.137049Z", - "shell.execute_reply": "2024-09-25T08:45:59.136439Z" + "iopub.execute_input": "2024-09-25T09:16:06.417958Z", + "iopub.status.busy": "2024-09-25T09:16:06.417539Z", + "iopub.status.idle": "2024-09-25T09:16:06.447873Z", + "shell.execute_reply": "2024-09-25T09:16:06.447258Z" } }, "outputs": [], @@ -123,10 +123,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.139098Z", - "iopub.status.busy": "2024-09-25T08:45:59.138865Z", - "iopub.status.idle": "2024-09-25T08:45:59.552159Z", - "shell.execute_reply": "2024-09-25T08:45:59.551473Z" + "iopub.execute_input": "2024-09-25T09:16:06.450320Z", + "iopub.status.busy": "2024-09-25T09:16:06.449924Z", + "iopub.status.idle": "2024-09-25T09:16:06.866013Z", + "shell.execute_reply": "2024-09-25T09:16:06.865273Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.554547Z", - "iopub.status.busy": "2024-09-25T08:45:59.554002Z", - "iopub.status.idle": "2024-09-25T08:45:59.663789Z", - "shell.execute_reply": "2024-09-25T08:45:59.663101Z" + "iopub.execute_input": "2024-09-25T09:16:06.868309Z", + "iopub.status.busy": "2024-09-25T09:16:06.867927Z", + "iopub.status.idle": "2024-09-25T09:16:06.978442Z", + "shell.execute_reply": "2024-09-25T09:16:06.977780Z" } }, "outputs": [ @@ -207,10 +207,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.665886Z", - "iopub.status.busy": "2024-09-25T08:45:59.665684Z", - "iopub.status.idle": "2024-09-25T08:45:59.860119Z", - "shell.execute_reply": "2024-09-25T08:45:59.859524Z" + "iopub.execute_input": "2024-09-25T09:16:06.980352Z", + "iopub.status.busy": "2024-09-25T09:16:06.980151Z", + "iopub.status.idle": "2024-09-25T09:16:07.183307Z", + "shell.execute_reply": "2024-09-25T09:16:07.182670Z" } }, "outputs": [ @@ -255,10 +255,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.862024Z", - "iopub.status.busy": "2024-09-25T08:45:59.861828Z", - "iopub.status.idle": "2024-09-25T08:46:00.017296Z", - "shell.execute_reply": "2024-09-25T08:46:00.016721Z" + "iopub.execute_input": "2024-09-25T09:16:07.185547Z", + "iopub.status.busy": "2024-09-25T09:16:07.185148Z", + "iopub.status.idle": "2024-09-25T09:16:07.342855Z", + "shell.execute_reply": "2024-09-25T09:16:07.342174Z" } }, "outputs": [ @@ -303,10 +303,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:00.019302Z", - "iopub.status.busy": "2024-09-25T08:46:00.019101Z", - "iopub.status.idle": "2024-09-25T08:46:01.746029Z", - "shell.execute_reply": "2024-09-25T08:46:01.745411Z" + "iopub.execute_input": "2024-09-25T09:16:07.345154Z", + "iopub.status.busy": "2024-09-25T09:16:07.344798Z", + "iopub.status.idle": "2024-09-25T09:16:09.109045Z", + "shell.execute_reply": "2024-09-25T09:16:09.108361Z" } }, "outputs": [ @@ -351,10 +351,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:01.748138Z", - "iopub.status.busy": "2024-09-25T08:46:01.747938Z", - "iopub.status.idle": "2024-09-25T08:46:03.913265Z", - "shell.execute_reply": "2024-09-25T08:46:03.912629Z" + "iopub.execute_input": "2024-09-25T09:16:09.111348Z", + "iopub.status.busy": "2024-09-25T09:16:09.110859Z", + "iopub.status.idle": "2024-09-25T09:16:11.296500Z", + "shell.execute_reply": "2024-09-25T09:16:11.295773Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb index f992c66b0..e1635cccd 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb @@ -39,10 +39,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:05.424673Z", - "iopub.status.busy": "2024-09-25T08:46:05.424478Z", - "iopub.status.idle": "2024-09-25T08:46:06.210238Z", - "shell.execute_reply": "2024-09-25T08:46:06.209414Z" + "iopub.execute_input": "2024-09-25T09:16:12.836986Z", + "iopub.status.busy": "2024-09-25T09:16:12.836785Z", + "iopub.status.idle": "2024-09-25T09:16:13.624439Z", + "shell.execute_reply": "2024-09-25T09:16:13.623679Z" } }, "outputs": [], @@ -56,10 +56,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:06.212762Z", - "iopub.status.busy": "2024-09-25T08:46:06.212523Z", - "iopub.status.idle": "2024-09-25T08:46:06.244452Z", - "shell.execute_reply": "2024-09-25T08:46:06.243761Z" + "iopub.execute_input": "2024-09-25T09:16:13.627091Z", + "iopub.status.busy": "2024-09-25T09:16:13.626661Z", + "iopub.status.idle": "2024-09-25T09:16:13.657788Z", + "shell.execute_reply": "2024-09-25T09:16:13.657145Z" } }, "outputs": [], @@ -100,10 +100,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:06.246833Z", - "iopub.status.busy": "2024-09-25T08:46:06.246619Z", - "iopub.status.idle": "2024-09-25T08:46:06.737827Z", - "shell.execute_reply": "2024-09-25T08:46:06.737144Z" + "iopub.execute_input": "2024-09-25T09:16:13.660330Z", + "iopub.status.busy": "2024-09-25T09:16:13.659909Z", + "iopub.status.idle": "2024-09-25T09:16:14.161359Z", + "shell.execute_reply": "2024-09-25T09:16:14.160648Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:06.739922Z", - "iopub.status.busy": "2024-09-25T08:46:06.739675Z", - "iopub.status.idle": "2024-09-25T08:46:07.056522Z", - "shell.execute_reply": "2024-09-25T08:46:07.055918Z" + "iopub.execute_input": "2024-09-25T09:16:14.163774Z", + "iopub.status.busy": "2024-09-25T09:16:14.163323Z", + "iopub.status.idle": "2024-09-25T09:16:14.459253Z", + "shell.execute_reply": "2024-09-25T09:16:14.458628Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb index a5e87d836..aa1717910 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb @@ -39,10 +39,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:08.372311Z", - "iopub.status.busy": "2024-09-25T08:46:08.372130Z", - "iopub.status.idle": "2024-09-25T08:46:09.152939Z", - "shell.execute_reply": "2024-09-25T08:46:09.152052Z" + "iopub.execute_input": "2024-09-25T09:16:15.935122Z", + "iopub.status.busy": "2024-09-25T09:16:15.934929Z", + "iopub.status.idle": "2024-09-25T09:16:16.729297Z", + "shell.execute_reply": "2024-09-25T09:16:16.728526Z" } }, "outputs": [], @@ -56,10 +56,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:09.155548Z", - "iopub.status.busy": "2024-09-25T08:46:09.155323Z", - "iopub.status.idle": "2024-09-25T08:46:09.185936Z", - "shell.execute_reply": "2024-09-25T08:46:09.185301Z" + "iopub.execute_input": "2024-09-25T09:16:16.731953Z", + "iopub.status.busy": "2024-09-25T09:16:16.731515Z", + "iopub.status.idle": "2024-09-25T09:16:16.761568Z", + "shell.execute_reply": "2024-09-25T09:16:16.760940Z" } }, "outputs": [], @@ -100,10 +100,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:09.188187Z", - "iopub.status.busy": "2024-09-25T08:46:09.187984Z", - "iopub.status.idle": "2024-09-25T08:46:09.683161Z", - "shell.execute_reply": "2024-09-25T08:46:09.682407Z" + "iopub.execute_input": "2024-09-25T09:16:16.763776Z", + "iopub.status.busy": "2024-09-25T09:16:16.763374Z", + "iopub.status.idle": "2024-09-25T09:16:17.252864Z", + "shell.execute_reply": "2024-09-25T09:16:17.252122Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:09.685164Z", - "iopub.status.busy": "2024-09-25T08:46:09.684923Z", - "iopub.status.idle": "2024-09-25T08:46:09.980506Z", - "shell.execute_reply": "2024-09-25T08:46:09.979804Z" + "iopub.execute_input": "2024-09-25T09:16:17.254944Z", + "iopub.status.busy": "2024-09-25T09:16:17.254691Z", + "iopub.status.idle": "2024-09-25T09:16:17.551078Z", + "shell.execute_reply": "2024-09-25T09:16:17.550481Z" } }, "outputs": [ diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_acc_visitor-members.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_acc_visitor-members.html index 1ce427486..ef3958e24 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_acc_visitor-members.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_acc_visitor-members.html @@ -159,126 +159,128 @@ is_net_event(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected is_net_move(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected is_net_send(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - local_var_type() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - make_symbol(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected - method_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected - mod_filenamenmodl::codegen::CodegenCppVisitorprotected - namespace_name() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - need_semicolon(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic - net_receive_buffering_declaration()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - net_receive_buffering_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_receive_exist() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_receive_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_send_buffer_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nmodl_version() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - node_data_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected - nrn_cur_reduction_loop_required() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - nrn_cur_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nrn_state_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nrn_thread_arguments() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - nrn_thread_internal_arguments() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - num_thread_objects() const noexceptnmodl::codegen::CodegenCoreneuronCppVisitorinlineprotected - object_specifier_mapnmodl::codegen::CodegenCppVisitorprotected - operator_for_d() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - operator_for_rhs() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - optimize_ion_variable_copies() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - optimize_ionvar_copiesnmodl::codegen::CodegenCppVisitorprotected - ParamVector typedefnmodl::codegen::CodegenCppVisitorprotected - position_of_float_var(const std::string &name) const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - position_of_int_var(const std::string &name) const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_abort_routine() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_atomic_reduction_pragma() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_backend_includes() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_backend_info()nmodl::codegen::CodegenCppVisitorprotected - print_before_after_block(const ast::Block *node, size_t block_id)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_channel_iteration_block_parallel_hint(BlockType type, const ast::Block *block) overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_check_table_thread_function()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_codegen_routines() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_common_getters()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_compute_functions() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_coreneuron_includes()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_data_structures(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_deriv_advance_flag_transfer_to_device() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_derivimplicit_kernel(const ast::Block &block)nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_device_atomic_capture_annotation() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_device_stream_wait() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_dt_update_to_device() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected - print_fast_imem_calculation() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_first_pointer_var_index_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_first_random_var_index_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor - print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_function_procedure_helper(const ast::Block &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_function_prototypes() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_function_table_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_function_tables(const ast::FunctionTableBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected - print_g_unused() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_get_memb_list()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_global_function_common_code(BlockType type, const std::string &function_name="") overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_global_method_annotation()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_global_struct_function_table_ptrs()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_variable_device_update_annotation() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_global_variables_for_hoc() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_headers_include() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_initial_block(const ast::InitialBlock *node)nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_instance_struct_copy_to_device() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_instance_struct_delete_from_device() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_instance_struct_transfer_routine_declarations() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_instance_struct_transfer_routines(const std::vector< std::string > &ptr_members) overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_instance_variable_setup()nmodl::codegen::CodegenCoreneuronCppVisitor - print_ion_var_constructor(const std::vector< std::string > &members)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_ion_var_structure()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_ion_variable() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_kernel_data_present_annotation_block_begin() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_kernel_data_present_annotation_block_end() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_mech_type_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_mechanism_global_var_structure(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected - print_mechanism_range_var_structure(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorvirtual - print_mechanism_register() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_memb_list_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_memory_allocation_routine() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected - print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected - print_net_event_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_init()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_init_acc_serial_annotation_block_begin() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_net_init_acc_serial_annotation_block_end() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_net_move_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_receive()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_arg_size_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_buffering(bool need_mech_inst=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_kernel()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_loop_begin()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_receive_loop_end()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_send_buf_count_update_to_device() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_net_send_buf_count_update_to_host() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_net_send_buf_update_to_host() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_net_send_buffering()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_send_buffering_cnt_update() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_net_send_buffering_grow() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_net_send_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_newtonspace_transfer_to_device() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected - print_nrn_alloc() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_constructor() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur_matrix_shadow_reduction() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_nrn_cur_matrix_shadow_update() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual - print_nrn_cur_non_conductance_kernel() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_current(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_destructor() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + is_nrn_pointing(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + local_var_type() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + make_symbol(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected + method_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected + mod_filenamenmodl::codegen::CodegenCppVisitorprotected + namespace_name() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + need_semicolon(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic + net_receive_buffering_declaration()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + net_receive_buffering_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_receive_exist() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_receive_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_send_buffer_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nmodl_version() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + node_data_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected + nrn_cur_reduction_loop_required() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + nrn_cur_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nrn_state_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nrn_thread_arguments() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + nrn_thread_internal_arguments() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + num_thread_objects() const noexceptnmodl::codegen::CodegenCoreneuronCppVisitorinlineprotected + object_specifier_mapnmodl::codegen::CodegenCppVisitorprotected + operator_for_d() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + operator_for_rhs() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + optimize_ion_variable_copies() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + optimize_ionvar_copiesnmodl::codegen::CodegenCppVisitorprotected + ParamVector typedefnmodl::codegen::CodegenCppVisitorprotected + position_of_float_var(const std::string &name) const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + position_of_int_var(const std::string &name) const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_abort_routine() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_atomic_reduction_pragma() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_backend_includes() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_backend_info()nmodl::codegen::CodegenCppVisitorprotected + print_before_after_block(const ast::Block *node, size_t block_id)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_channel_iteration_block_parallel_hint(BlockType type, const ast::Block *block) overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_check_table_thread_function()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_codegen_routines() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_common_getters()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_compute_functions() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_coreneuron_includes()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_data_structures(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_deriv_advance_flag_transfer_to_device() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_derivimplicit_kernel(const ast::Block &block)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_device_atomic_capture_annotation() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_device_stream_wait() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_dt_update_to_device() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected + print_fast_imem_calculation() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_first_pointer_var_index_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_first_random_var_index_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor + print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_function_procedure_helper(const ast::Block &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_function_prototypes() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_function_table_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_function_tables(const ast::FunctionTableBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected + print_g_unused() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_get_memb_list()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_global_function_common_code(BlockType type, const std::string &function_name="") overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_global_method_annotation()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_global_struct_function_table_ptrs()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_variable_device_update_annotation() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_global_variables_for_hoc() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_headers_include() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_initial_block(const ast::InitialBlock *node)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_instance_struct_copy_to_device() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_instance_struct_delete_from_device() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_instance_struct_transfer_routine_declarations() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_instance_struct_transfer_routines(const std::vector< std::string > &ptr_members) overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_instance_variable_setup()nmodl::codegen::CodegenCoreneuronCppVisitor + print_ion_var_constructor(const std::vector< std::string > &members)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_ion_var_structure()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_ion_variable() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_kernel_data_present_annotation_block_begin() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_kernel_data_present_annotation_block_end() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_mech_type_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_mechanism_global_var_structure(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected + print_mechanism_range_var_structure(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorvirtual + print_mechanism_register() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_memb_list_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_memory_allocation_routine() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected + print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected + print_net_event_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_init()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_init_acc_serial_annotation_block_begin() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_net_init_acc_serial_annotation_block_end() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_net_move_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_receive()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_arg_size_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_buffering(bool need_mech_inst=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_kernel()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_loop_begin()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_receive_loop_end()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_send_buf_count_update_to_device() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_net_send_buf_count_update_to_host() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_net_send_buf_update_to_host() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_net_send_buffering()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_send_buffering_cnt_update() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_net_send_buffering_grow() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_net_send_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_newtonspace_transfer_to_device() const overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected + print_nrn_alloc() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_constructor() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur_matrix_shadow_reduction() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_nrn_cur_matrix_shadow_update() overridenmodl::codegen::CodegenAccVisitorprotectedvirtual + print_nrn_cur_non_conductance_kernel() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_current(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_destructor() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_nrn_pointing(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual print_nrn_state() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual print_num_variable_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected print_prcellstate_macros() constnmodl::codegen::CodegenCppVisitorprotected diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_acc_visitor.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_acc_visitor.html index 21508e020..fb4fe4fba 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_acc_visitor.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_acc_visitor.html @@ -572,6 +572,8 @@ bool is_net_send (const std::string &name) const noexcept  Checks if given function name is net_send. More...
  +bool is_nrn_pointing (const std::string &name) const noexcept +  bool is_net_move (const std::string &name) const noexcept  Checks if given function name is net_move. More...
  @@ -625,6 +627,9 @@ virtual void print_function_call (const ast::FunctionCall &node)  Print call to internal or external function. More...
  +virtual void print_nrn_pointing (const ast::FunctionCall &node) + Print nrn_pointing. More...
+  void print_procedure (const ast::ProcedureBlock &node)  Print NMODL procedure in target backend code. More...
  diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor-members.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor-members.html index d691c34c0..5b70d0d09 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor-members.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor-members.html @@ -159,126 +159,128 @@ is_net_event(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected is_net_move(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected is_net_send(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - local_var_type() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - make_symbol(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected - method_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected - mod_filenamenmodl::codegen::CodegenCppVisitorprotected - namespace_name() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - need_semicolon(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic - net_receive_buffering_declaration()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - net_receive_buffering_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_receive_exist() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_receive_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_send_buffer_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nmodl_version() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - node_data_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected - nrn_cur_reduction_loop_required()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - nrn_cur_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nrn_state_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nrn_thread_arguments() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - nrn_thread_internal_arguments() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - num_thread_objects() const noexceptnmodl::codegen::CodegenCoreneuronCppVisitorinlineprotected - object_specifier_mapnmodl::codegen::CodegenCppVisitorprotected - operator_for_d() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - operator_for_rhs() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - optimize_ion_variable_copies() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - optimize_ionvar_copiesnmodl::codegen::CodegenCppVisitorprotected - ParamVector typedefnmodl::codegen::CodegenCppVisitorprotected - position_of_float_var(const std::string &name) const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - position_of_int_var(const std::string &name) const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_abort_routine() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_atomic_reduction_pragma() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_backend_includes()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_backend_info()nmodl::codegen::CodegenCppVisitorprotected - print_before_after_block(const ast::Block *node, size_t block_id)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_channel_iteration_block_parallel_hint(BlockType type, const ast::Block *block)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_check_table_thread_function()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_codegen_routines() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_common_getters()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_compute_functions() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_coreneuron_includes()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_data_structures(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_deriv_advance_flag_transfer_to_device() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_derivimplicit_kernel(const ast::Block &block)nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_device_atomic_capture_annotation() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_device_stream_wait() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_dt_update_to_device() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected - print_fast_imem_calculation() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_first_pointer_var_index_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_first_random_var_index_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor - print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_function_procedure_helper(const ast::Block &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_function_prototypes() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_function_table_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_function_tables(const ast::FunctionTableBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected - print_g_unused() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_get_memb_list()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_global_function_common_code(BlockType type, const std::string &function_name="") overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_global_method_annotation()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_global_struct_function_table_ptrs()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_variable_device_update_annotation()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_global_variables_for_hoc() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_headers_include() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_initial_block(const ast::InitialBlock *node)nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_instance_struct_copy_to_device()nmodl::codegen::CodegenCoreneuronCppVisitorinlineprotectedvirtual - print_instance_struct_delete_from_device()nmodl::codegen::CodegenCoreneuronCppVisitorinlineprotectedvirtual - print_instance_struct_transfer_routine_declarations()nmodl::codegen::CodegenCoreneuronCppVisitorinlineprotectedvirtual - print_instance_struct_transfer_routines(std::vector< std::string > const &)nmodl::codegen::CodegenCoreneuronCppVisitorinlineprotectedvirtual - print_instance_variable_setup()nmodl::codegen::CodegenCoreneuronCppVisitor - print_ion_var_constructor(const std::vector< std::string > &members)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_ion_var_structure()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_ion_variable() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_kernel_data_present_annotation_block_begin()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_kernel_data_present_annotation_block_end()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_mech_type_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_mechanism_global_var_structure(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected - print_mechanism_range_var_structure(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorvirtual - print_mechanism_register() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_memb_list_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_memory_allocation_routine() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected - print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected - print_net_event_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_init()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_init_acc_serial_annotation_block_begin()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_init_acc_serial_annotation_block_end()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_move_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_receive()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_arg_size_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_buffering(bool need_mech_inst=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_kernel()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_receive_loop_begin()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_receive_loop_end()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_send_buf_count_update_to_device() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_send_buf_count_update_to_host() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_send_buf_update_to_host() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_send_buffering()nmodl::codegen::CodegenCoreneuronCppVisitorprotected - print_net_send_buffering_cnt_update() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_send_buffering_grow()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_net_send_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_newtonspace_transfer_to_device() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected - print_nrn_alloc() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_constructor() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur_matrix_shadow_reduction()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur_matrix_shadow_update()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_cur_non_conductance_kernel() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_current(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_destructor() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual - print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + is_nrn_pointing(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + local_var_type() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + make_symbol(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected + method_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected + mod_filenamenmodl::codegen::CodegenCppVisitorprotected + namespace_name() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + need_semicolon(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic + net_receive_buffering_declaration()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + net_receive_buffering_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_receive_exist() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_receive_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_send_buffer_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nmodl_version() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + node_data_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected + nrn_cur_reduction_loop_required()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + nrn_cur_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nrn_state_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nrn_thread_arguments() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + nrn_thread_internal_arguments() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + num_thread_objects() const noexceptnmodl::codegen::CodegenCoreneuronCppVisitorinlineprotected + object_specifier_mapnmodl::codegen::CodegenCppVisitorprotected + operator_for_d() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + operator_for_rhs() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + optimize_ion_variable_copies() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + optimize_ionvar_copiesnmodl::codegen::CodegenCppVisitorprotected + ParamVector typedefnmodl::codegen::CodegenCppVisitorprotected + position_of_float_var(const std::string &name) const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + position_of_int_var(const std::string &name) const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_abort_routine() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_atomic_reduction_pragma() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_backend_includes()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_backend_info()nmodl::codegen::CodegenCppVisitorprotected + print_before_after_block(const ast::Block *node, size_t block_id)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_channel_iteration_block_parallel_hint(BlockType type, const ast::Block *block)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_check_table_thread_function()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_codegen_routines() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_common_getters()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_compute_functions() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_coreneuron_includes()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_data_structures(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_deriv_advance_flag_transfer_to_device() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_derivimplicit_kernel(const ast::Block &block)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_device_atomic_capture_annotation() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_device_stream_wait() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_dt_update_to_device() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected + print_fast_imem_calculation() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_first_pointer_var_index_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_first_random_var_index_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor + print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_function_procedure_helper(const ast::Block &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_function_prototypes() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_function_table_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_function_tables(const ast::FunctionTableBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected + print_g_unused() const overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_get_memb_list()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_global_function_common_code(BlockType type, const std::string &function_name="") overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_global_method_annotation()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_global_struct_function_table_ptrs()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_variable_device_update_annotation()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_global_variables_for_hoc() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_headers_include() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_initial_block(const ast::InitialBlock *node)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_instance_struct_copy_to_device()nmodl::codegen::CodegenCoreneuronCppVisitorinlineprotectedvirtual + print_instance_struct_delete_from_device()nmodl::codegen::CodegenCoreneuronCppVisitorinlineprotectedvirtual + print_instance_struct_transfer_routine_declarations()nmodl::codegen::CodegenCoreneuronCppVisitorinlineprotectedvirtual + print_instance_struct_transfer_routines(std::vector< std::string > const &)nmodl::codegen::CodegenCoreneuronCppVisitorinlineprotectedvirtual + print_instance_variable_setup()nmodl::codegen::CodegenCoreneuronCppVisitor + print_ion_var_constructor(const std::vector< std::string > &members)nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_ion_var_structure()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_ion_variable() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_kernel_data_present_annotation_block_begin()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_kernel_data_present_annotation_block_end()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_mech_type_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_mechanism_global_var_structure(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected + print_mechanism_range_var_structure(bool print_initializers) overridenmodl::codegen::CodegenCoreneuronCppVisitorvirtual + print_mechanism_register() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_memb_list_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_memory_allocation_routine() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected + print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected + print_net_event_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_init()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_init_acc_serial_annotation_block_begin()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_init_acc_serial_annotation_block_end()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_move_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_receive()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_arg_size_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_buffering(bool need_mech_inst=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_kernel()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_receive_loop_begin()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_receive_loop_end()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_send_buf_count_update_to_device() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_send_buf_count_update_to_host() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_send_buf_update_to_host() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_send_buffering()nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_net_send_buffering_cnt_update() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_send_buffering_grow()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_net_send_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_newtonspace_transfer_to_device() constnmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected + print_nrn_alloc() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_constructor() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur_matrix_shadow_reduction()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur_matrix_shadow_update()nmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_cur_non_conductance_kernel() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_current(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_destructor() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual + print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenCoreneuronCppVisitorprotected + print_nrn_pointing(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual print_nrn_state() overridenmodl::codegen::CodegenCoreneuronCppVisitorprotectedvirtual print_num_variable_getter()nmodl::codegen::CodegenCoreneuronCppVisitorprotected print_prcellstate_macros() constnmodl::codegen::CodegenCppVisitorprotected diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor.html index 54e89c9a4..6f21256bd 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor.html @@ -982,6 +982,8 @@ bool is_net_send (const std::string &name) const noexcept  Checks if given function name is net_send. More...
  +bool is_nrn_pointing (const std::string &name) const noexcept +  bool is_net_move (const std::string &name) const noexcept  Checks if given function name is net_move. More...
  @@ -1035,6 +1037,9 @@ virtual void print_function_call (const ast::FunctionCall &node)  Print call to internal or external function. More...
  +virtual void print_nrn_pointing (const ast::FunctionCall &node) + Print nrn_pointing. More...
+  void print_procedure (const ast::ProcedureBlock &node)  Print NMODL procedure in target backend code. More...
  diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor-members.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor-members.html index f3674afcf..5a17158d9 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor-members.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor-members.html @@ -155,73 +155,75 @@ is_net_event(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected is_net_move(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected is_net_send(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - local_var_type() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - make_symbol(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected - method_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected - mod_filenamenmodl::codegen::CodegenCppVisitorprotected - namespace_name()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - need_semicolon(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic - net_receive_buffering_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_receive_exist() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_receive_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_send_buffer_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nmodl_version() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - node_data_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected - nrn_cur_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nrn_state_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nrn_thread_arguments() const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - nrn_thread_internal_arguments()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - object_specifier_mapnmodl::codegen::CodegenCppVisitorprotected - operator_for_d() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - operator_for_rhs() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - optimize_ion_variable_copies() const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - optimize_ionvar_copiesnmodl::codegen::CodegenCppVisitorprotected - ParamVector typedefnmodl::codegen::CodegenCppVisitorprotected - position_of_float_var(const std::string &name) const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - position_of_int_var(const std::string &name) const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_atomic_reduction_pragma()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_backend_info()nmodl::codegen::CodegenCppVisitorprotected - print_codegen_routines()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_compute_functions()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_data_structures(bool print_initializers)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected - print_fast_imem_calculation()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor - print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_function_procedure_helper(const ast::Block &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_function_prototypes()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_function_table_call(const ast::FunctionCall &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_function_tables(const ast::FunctionTableBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected - print_g_unused() const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_global_function_common_code(BlockType type, const std::string &function_name="")=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_global_struct_function_table_ptrs()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_variables_for_hoc()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_headers_include()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_ion_variable()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_mechanism_global_var_structure(bool print_initializers)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected - print_mechanism_range_var_structure(bool print_initializers)=0nmodl::codegen::CodegenCppVisitorpure virtual - print_mechanism_register()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected - print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected - print_net_event_call(const ast::FunctionCall &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_net_move_call(const ast::FunctionCall &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_net_send_call(const ast::FunctionCall &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected - print_nrn_alloc()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_nrn_constructor()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_nrn_cur()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_nrn_cur_kernel(const ast::BreakpointBlock &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_nrn_cur_non_conductance_kernel()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_nrn_current(const ast::BreakpointBlock &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual - print_nrn_destructor()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + is_nrn_pointing(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + local_var_type() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + make_symbol(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected + method_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected + mod_filenamenmodl::codegen::CodegenCppVisitorprotected + namespace_name()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + need_semicolon(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic + net_receive_buffering_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_receive_exist() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_receive_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_send_buffer_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nmodl_version() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + node_data_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected + nrn_cur_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nrn_state_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nrn_thread_arguments() const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + nrn_thread_internal_arguments()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + object_specifier_mapnmodl::codegen::CodegenCppVisitorprotected + operator_for_d() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + operator_for_rhs() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + optimize_ion_variable_copies() const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + optimize_ionvar_copiesnmodl::codegen::CodegenCppVisitorprotected + ParamVector typedefnmodl::codegen::CodegenCppVisitorprotected + position_of_float_var(const std::string &name) const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + position_of_int_var(const std::string &name) const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_atomic_reduction_pragma()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_backend_info()nmodl::codegen::CodegenCppVisitorprotected + print_codegen_routines()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_compute_functions()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_data_structures(bool print_initializers)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected + print_fast_imem_calculation()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor + print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_function_procedure_helper(const ast::Block &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_function_prototypes()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_function_table_call(const ast::FunctionCall &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_function_tables(const ast::FunctionTableBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected + print_g_unused() const =0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_global_function_common_code(BlockType type, const std::string &function_name="")=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_global_struct_function_table_ptrs()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_variables_for_hoc()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_headers_include()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_ion_variable()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_mechanism_global_var_structure(bool print_initializers)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected + print_mechanism_range_var_structure(bool print_initializers)=0nmodl::codegen::CodegenCppVisitorpure virtual + print_mechanism_register()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected + print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected + print_net_event_call(const ast::FunctionCall &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_net_move_call(const ast::FunctionCall &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_net_send_call(const ast::FunctionCall &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected + print_nrn_alloc()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nrn_constructor()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nrn_cur()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nrn_cur_kernel(const ast::BreakpointBlock &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nrn_cur_non_conductance_kernel()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nrn_current(const ast::BreakpointBlock &node)=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nrn_destructor()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual + print_nrn_pointing(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual print_nrn_state()=0nmodl::codegen::CodegenCppVisitorprotectedpure virtual print_prcellstate_macros() constnmodl::codegen::CodegenCppVisitorprotected print_procedure(const ast::ProcedureBlock &node)nmodl::codegen::CodegenCppVisitorprotected diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html index c41330904..0b3c2f451 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html @@ -624,6 +624,8 @@ bool is_net_send (const std::string &name) const noexcept  Checks if given function name is net_send. More...
  +bool is_nrn_pointing (const std::string &name) const noexcept +  bool is_net_move (const std::string &name) const noexcept  Checks if given function name is net_move. More...
  @@ -692,6 +694,9 @@ virtual void print_net_send_call (const ast::FunctionCall &node)=0  Print call to net_send. More...
  +virtual void print_nrn_pointing (const ast::FunctionCall &node) + Print nrn_pointing. More...
+  virtual void print_net_move_call (const ast::FunctionCall &node)=0  Print call to net_move. More...
  @@ -1293,7 +1298,7 @@

Returns
The same string with double-quotes pre- and postfixed
-

Definition at line 1045 of file codegen_cpp_visitor.hpp.

+

Definition at line 1054 of file codegen_cpp_visitor.hpp.

@@ -1535,7 +1540,7 @@

Returns
return a tuple <true, array_length> if variable is an array otherwise <false, 0>
-

Definition at line 1701 of file codegen_cpp_visitor.cpp.

+

Definition at line 1711 of file codegen_cpp_visitor.cpp.

@@ -1563,7 +1568,7 @@

-

Definition at line 1443 of file codegen_cpp_visitor.cpp.

+

Definition at line 1453 of file codegen_cpp_visitor.cpp.

@@ -2063,7 +2068,7 @@

Returns
A vector of float variables
-

Definition at line 1228 of file codegen_cpp_visitor.cpp.

+

Definition at line 1238 of file codegen_cpp_visitor.cpp.

@@ -2137,7 +2142,7 @@

Note
Variables for watch statements : there is one extra variable used in coreneuron compared to actual watch statements for compatibility with neuron (which uses one extra Datum variable)
-

Definition at line 1304 of file codegen_cpp_visitor.cpp.

+

Definition at line 1314 of file codegen_cpp_visitor.cpp.

@@ -2157,7 +2162,7 @@

-

Definition at line 1676 of file codegen_cpp_visitor.cpp.

+

Definition at line 1686 of file codegen_cpp_visitor.cpp.

@@ -2215,7 +2220,7 @@

-

Definition at line 1688 of file codegen_cpp_visitor.cpp.

+

Definition at line 1698 of file codegen_cpp_visitor.cpp.

@@ -2818,7 +2823,7 @@

Returns
True if operator() is const else False
-

Definition at line 669 of file codegen_cpp_visitor.cpp.

+

Definition at line 679 of file codegen_cpp_visitor.cpp.

@@ -2855,7 +2860,7 @@

Returns
true if the function is net_event
-

Definition at line 666 of file codegen_cpp_visitor.hpp.

+

Definition at line 670 of file codegen_cpp_visitor.hpp.

@@ -2892,7 +2897,7 @@

Returns
true if the function is net_move
-

Definition at line 656 of file codegen_cpp_visitor.hpp.

+

Definition at line 660 of file codegen_cpp_visitor.hpp.

@@ -2931,6 +2936,34 @@

Definition at line 646 of file codegen_cpp_visitor.hpp.

+ + + +

◆ is_nrn_pointing()

+ +
+
+ + + + + +
+ + + + + + + + +
bool nmodl::codegen::CodegenCppVisitor::is_nrn_pointing (const std::string & name) const
+ 		+inlineprotectednoexcept
+
+ +

Definition at line 650 of file codegen_cpp_visitor.hpp.

+
@@ -2995,7 +3028,7 @@

Returns
A symbol based on the given name
-

Definition at line 1072 of file codegen_cpp_visitor.hpp.

+

Definition at line 1081 of file codegen_cpp_visitor.hpp.

@@ -3032,7 +3065,7 @@

Returns
The name of the function or procedure postfixed with the model name
-

Definition at line 1055 of file codegen_cpp_visitor.hpp.

+

Definition at line 1064 of file codegen_cpp_visitor.hpp.

@@ -3743,7 +3776,7 @@

Definition at line 786 of file codegen_cpp_visitor.cpp.

+

Definition at line 796 of file codegen_cpp_visitor.cpp.

@@ -3808,7 +3841,7 @@

Definition at line 533 of file codegen_cpp_visitor.cpp.

+

Definition at line 543 of file codegen_cpp_visitor.cpp.

@@ -4024,7 +4057,7 @@

Definition at line 553 of file codegen_cpp_visitor.cpp.

+

Definition at line 563 of file codegen_cpp_visitor.cpp.

@@ -4060,7 +4093,7 @@

Definition at line 712 of file codegen_cpp_visitor.cpp.

+

Definition at line 722 of file codegen_cpp_visitor.cpp.

@@ -4089,7 +4122,7 @@

Definition at line 705 of file codegen_cpp_visitor.cpp.

+

Definition at line 715 of file codegen_cpp_visitor.cpp.

@@ -4403,7 +4436,7 @@

Definition at line 585 of file codegen_cpp_visitor.cpp.

+

Definition at line 595 of file codegen_cpp_visitor.cpp.

@@ -4497,7 +4530,7 @@

Definition at line 621 of file codegen_cpp_visitor.cpp.

+

Definition at line 631 of file codegen_cpp_visitor.cpp.

@@ -4526,7 +4559,7 @@

Definition at line 627 of file codegen_cpp_visitor.cpp.

+

Definition at line 637 of file codegen_cpp_visitor.cpp.

@@ -4668,7 +4701,7 @@

static const double PI = 3.14159;
static const double R = 8.3145;
-

Definition at line 832 of file codegen_cpp_visitor.cpp.

+

Definition at line 842 of file codegen_cpp_visitor.cpp.

@@ -4926,6 +4959,36 @@

nmodl::codegen::CodegenCoreneuronCppVisitor, and nmodl::codegen::CodegenNeuronCppVisitor.

+ + + +

◆ print_nrn_pointing()

+ +
+
+ + + + + +
+ + + + + + + + +
void nmodl::codegen::CodegenCppVisitor::print_nrn_pointing (const ast::FunctionCall & node)
+ 		+protectedvirtual
+
+ +

Print nrn_pointing.

+ +

Definition at line 532 of file codegen_cpp_visitor.cpp.

+
@@ -4982,7 +5045,7 @@

Definition at line 578 of file codegen_cpp_visitor.cpp.

+

Definition at line 588 of file codegen_cpp_visitor.cpp.

@@ -5018,7 +5081,7 @@

Definition at line 528 of file codegen_cpp_visitor.cpp.

+

Definition at line 538 of file codegen_cpp_visitor.cpp.

@@ -5037,7 +5100,7 @@

-

Definition at line 1714 of file codegen_cpp_visitor.cpp.

+

Definition at line 1724 of file codegen_cpp_visitor.cpp.

@@ -5150,7 +5213,7 @@

Definition at line 637 of file codegen_cpp_visitor.cpp.

+

Definition at line 647 of file codegen_cpp_visitor.cpp.

@@ -5178,7 +5241,7 @@

Definition at line 1581 of file codegen_cpp_visitor.cpp.

+

Definition at line 1591 of file codegen_cpp_visitor.cpp.

@@ -5206,7 +5269,7 @@

Definition at line 1472 of file codegen_cpp_visitor.cpp.

+

Definition at line 1482 of file codegen_cpp_visitor.cpp.

@@ -5235,7 +5298,7 @@

-

Definition at line 617 of file codegen_cpp_visitor.cpp.

+

Definition at line 627 of file codegen_cpp_visitor.cpp.

@@ -5473,7 +5536,7 @@

Definition at line 1418 of file codegen_cpp_visitor.cpp.

+

Definition at line 1428 of file codegen_cpp_visitor.cpp.

@@ -5671,7 +5734,7 @@

Definition at line 1152 of file codegen_cpp_visitor.cpp.

+

Definition at line 1162 of file codegen_cpp_visitor.cpp.

@@ -5703,7 +5766,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 998 of file codegen_cpp_visitor.cpp.

+

Definition at line 1008 of file codegen_cpp_visitor.cpp.

@@ -5735,7 +5798,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1016 of file codegen_cpp_visitor.cpp.

+

Definition at line 1026 of file codegen_cpp_visitor.cpp.

@@ -5767,7 +5830,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 877 of file codegen_cpp_visitor.cpp.

+

Definition at line 887 of file codegen_cpp_visitor.cpp.

@@ -5799,7 +5862,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 872 of file codegen_cpp_visitor.cpp.

+

Definition at line 882 of file codegen_cpp_visitor.cpp.

@@ -5831,7 +5894,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1122 of file codegen_cpp_visitor.cpp.

+

Definition at line 1132 of file codegen_cpp_visitor.cpp.

@@ -5863,7 +5926,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1093 of file codegen_cpp_visitor.cpp.

+

Definition at line 1103 of file codegen_cpp_visitor.cpp.

@@ -5895,7 +5958,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 948 of file codegen_cpp_visitor.cpp.

+

Definition at line 958 of file codegen_cpp_visitor.cpp.

@@ -5927,7 +5990,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 956 of file codegen_cpp_visitor.cpp.

+

Definition at line 966 of file codegen_cpp_visitor.cpp.

@@ -5959,7 +6022,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 867 of file codegen_cpp_visitor.cpp.

+

Definition at line 877 of file codegen_cpp_visitor.cpp.

@@ -5991,7 +6054,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 970 of file codegen_cpp_visitor.cpp.

+

Definition at line 980 of file codegen_cpp_visitor.cpp.

@@ -6023,7 +6086,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1036 of file codegen_cpp_visitor.cpp.

+

Definition at line 1046 of file codegen_cpp_visitor.cpp.

@@ -6055,7 +6118,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 935 of file codegen_cpp_visitor.cpp.

+

Definition at line 945 of file codegen_cpp_visitor.cpp.

@@ -6087,7 +6150,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 919 of file codegen_cpp_visitor.cpp.

+

Definition at line 929 of file codegen_cpp_visitor.cpp.

@@ -6119,7 +6182,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 861 of file codegen_cpp_visitor.cpp.

+

Definition at line 871 of file codegen_cpp_visitor.cpp.

@@ -6151,7 +6214,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 929 of file codegen_cpp_visitor.cpp.

+

Definition at line 939 of file codegen_cpp_visitor.cpp.

@@ -6183,7 +6246,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1070 of file codegen_cpp_visitor.cpp.

+

Definition at line 1080 of file codegen_cpp_visitor.cpp.

@@ -6215,7 +6278,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1077 of file codegen_cpp_visitor.cpp.

+

Definition at line 1087 of file codegen_cpp_visitor.cpp.

@@ -6247,7 +6310,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 882 of file codegen_cpp_visitor.cpp.

+

Definition at line 892 of file codegen_cpp_visitor.cpp.

@@ -6279,7 +6342,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 991 of file codegen_cpp_visitor.cpp.

+

Definition at line 1001 of file codegen_cpp_visitor.cpp.

@@ -6311,7 +6374,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 892 of file codegen_cpp_visitor.cpp.

+

Definition at line 902 of file codegen_cpp_visitor.cpp.

@@ -6349,7 +6412,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1466 of file codegen_cpp_visitor.cpp.

+

Definition at line 1476 of file codegen_cpp_visitor.cpp.

@@ -6381,7 +6444,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1062 of file codegen_cpp_visitor.cpp.

+

Definition at line 1072 of file codegen_cpp_visitor.cpp.

@@ -6413,7 +6476,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1082 of file codegen_cpp_visitor.cpp.

+

Definition at line 1092 of file codegen_cpp_visitor.cpp.

@@ -6444,7 +6507,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1031 of file codegen_cpp_visitor.cpp.

+

Definition at line 1041 of file codegen_cpp_visitor.cpp.

@@ -6476,7 +6539,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 852 of file codegen_cpp_visitor.cpp.

+

Definition at line 862 of file codegen_cpp_visitor.cpp.

@@ -6508,7 +6571,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1021 of file codegen_cpp_visitor.cpp.

+

Definition at line 1031 of file codegen_cpp_visitor.cpp.

@@ -6540,7 +6603,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 887 of file codegen_cpp_visitor.cpp.

+

Definition at line 897 of file codegen_cpp_visitor.cpp.

@@ -6572,7 +6635,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1057 of file codegen_cpp_visitor.cpp.

+

Definition at line 1067 of file codegen_cpp_visitor.cpp.

@@ -6603,7 +6666,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 900 of file codegen_cpp_visitor.cpp.

+

Definition at line 910 of file codegen_cpp_visitor.cpp.

@@ -6635,7 +6698,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1041 of file codegen_cpp_visitor.cpp.

+

Definition at line 1051 of file codegen_cpp_visitor.cpp.

@@ -6667,7 +6730,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 962 of file codegen_cpp_visitor.cpp.

+

Definition at line 972 of file codegen_cpp_visitor.cpp.

@@ -6977,7 +7040,7 @@

{CppObjectSpecifier::ThreadLocal, "thread_local"},
{CppObjectSpecifier::Const, "const"}}
-

Definition at line 1419 of file codegen_cpp_visitor.hpp.

+

Definition at line 1428 of file codegen_cpp_visitor.hpp.

diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.js b/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.js index 25d357523..aaa68ccc3 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.js +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.js @@ -52,6 +52,7 @@ var classnmodl_1_1codegen_1_1_codegen_cpp_visitor = [ "is_net_event", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a294f3c4467883beffdc0d6bea67e1741", null ], [ "is_net_move", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a7559257a5ad55a48d1221522838c5daf", null ], [ "is_net_send", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a2ecbf452d80ce4914271469183e2e31c", null ], + [ "is_nrn_pointing", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#ab17aa507fc9629eb122bd46c839e0261", null ], [ "local_var_type", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#ac03f9380fcd4421f95e56f37f0cd00c7", null ], [ "make_symbol", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#abb107f782ba7985c00ac77dc77acd35c", null ], [ "method_name", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a7cb14cb8ebe04982bb17999fa1a2c479", null ], @@ -115,6 +116,7 @@ var classnmodl_1_1codegen_1_1_codegen_cpp_visitor = [ "print_nrn_cur_non_conductance_kernel", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#aaf72cbf7288677fa045647df13322804", null ], [ "print_nrn_current", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a4bf65c93bea904102b63553f3e5dd1b3", null ], [ "print_nrn_destructor", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a481001b393776c233ccdc069916d2d7c", null ], + [ "print_nrn_pointing", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a179ec184fad5533dd35859beea905e37", null ], [ "print_nrn_state", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a2453a1be52f39c3fa9bab2603f1f4773", null ], [ "print_prcellstate_macros", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a522261006f1cc94869ef15cd26b739da", null ], [ "print_procedure", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a60bf374a3063ccd280e46b7af0e48645", null ], diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor-members.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor-members.html index 9e44645df..8efb15e18 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor-members.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor-members.html @@ -160,99 +160,101 @@ is_net_event(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected is_net_move(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected is_net_send(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - local_var_type() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - make_symbol(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected - method_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected - mod_filenamenmodl::codegen::CodegenCppVisitorprotected - namespace_name() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - need_semicolon(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic - net_receive_args()nmodl::codegen::CodegenNeuronCppVisitorprotected - net_receive_buffering_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_receive_exist() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_receive_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - net_send_buffer_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nmodl_version() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - node_data_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected - nrn_cur_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nrn_current_arguments()nmodl::codegen::CodegenNeuronCppVisitorprotected - nrn_current_parameters()nmodl::codegen::CodegenNeuronCppVisitorprotected - nrn_state_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected - nrn_thread_arguments() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - nrn_thread_internal_arguments() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - object_specifier_mapnmodl::codegen::CodegenCppVisitorprotected - operator_for_d() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - operator_for_rhs() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected - optimize_ion_variable_copies() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - optimize_ionvar_copiesnmodl::codegen::CodegenCppVisitorprotected - ParamVector typedefnmodl::codegen::CodegenCppVisitorprotected - position_of_float_var(const std::string &name) const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - position_of_int_var(const std::string &name) const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_atomic_reduction_pragma() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_backend_info()nmodl::codegen::CodegenCppVisitorprotected - print_callable_preamble_from_prop()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_check_table_entrypoint()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_codegen_routines() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_compute_functions() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_data_structures(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected - print_fast_imem_calculation() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor - print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_function_procedure_helper(const ast::Block &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_function_prototypes() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_function_table_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_function_tables(const ast::FunctionTableBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected - print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected - print_g_unused() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_global_function_common_code(BlockType type, const std::string &function_name="") overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_global_macros()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_global_param_default_values()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_global_struct_function_table_ptrs()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_external_access()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual - print_global_variables_for_hoc() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_headers_include() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_hoc_py_wrapper_function_body(const ast::Block *function_or_procedure_block, InterpreterWrapper wrapper_type)nmodl::codegen::CodegenNeuronCppVisitorprotected - print_hoc_py_wrapper_function_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_initial_block(const ast::InitialBlock *node)nmodl::codegen::CodegenNeuronCppVisitorprotected - print_ion_variable() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_macro_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_make_instance() constnmodl::codegen::CodegenNeuronCppVisitorprotected - print_make_node_data() constnmodl::codegen::CodegenNeuronCppVisitorprotected - print_mechanism_global_var_structure(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected - print_mechanism_range_var_structure(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorvirtual - print_mechanism_register() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_mechanism_variables_macros()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected - print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected - print_net_event_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_net_init()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_net_move_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_net_receive()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_net_receive_common_code()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_net_receive_registration()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_net_send_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_neuron_global_variable_declarations()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_neuron_includes()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected - print_node_data_structure(bool print_initializers)nmodl::codegen::CodegenNeuronCppVisitor - print_nrn_alloc() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_constructor() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_constructor_declaration()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_nrn_cur() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_cur_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_cur_non_conductance_kernel() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_current(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_destructor() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_nrn_destructor_declaration()nmodl::codegen::CodegenNeuronCppVisitorprotected - print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenNeuronCppVisitorprotected - print_nrn_jacob()nmodl::codegen::CodegenNeuronCppVisitorprotected + is_nrn_pointing(const std::string &name) const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + local_var_type() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + make_symbol(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected + method_name(const std::string &name) constnmodl::codegen::CodegenCppVisitorinlineprotected + mod_filenamenmodl::codegen::CodegenCppVisitorprotected + namespace_name() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + need_semicolon(const ast::Statement &node)nmodl::codegen::CodegenCppVisitorprotectedstatic + net_receive_args()nmodl::codegen::CodegenNeuronCppVisitorprotected + net_receive_buffering_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_receive_exist() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_receive_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + net_send_buffer_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nmodl_version() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + node_data_struct() constnmodl::codegen::CodegenCppVisitorinlineprotected + nrn_cur_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nrn_current_arguments()nmodl::codegen::CodegenNeuronCppVisitorprotected + nrn_current_parameters()nmodl::codegen::CodegenNeuronCppVisitorprotected + nrn_state_required() const noexceptnmodl::codegen::CodegenCppVisitorprotected + nrn_thread_arguments() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + nrn_thread_internal_arguments() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + object_specifier_mapnmodl::codegen::CodegenCppVisitorprotected + operator_for_d() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + operator_for_rhs() const noexceptnmodl::codegen::CodegenCppVisitorinlineprotected + optimize_ion_variable_copies() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + optimize_ionvar_copiesnmodl::codegen::CodegenCppVisitorprotected + ParamVector typedefnmodl::codegen::CodegenCppVisitorprotected + position_of_float_var(const std::string &name) const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + position_of_int_var(const std::string &name) const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_atomic_reduction_pragma() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_backend_info()nmodl::codegen::CodegenCppVisitorprotected + print_callable_preamble_from_prop()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_check_table_entrypoint()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_codegen_routines() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_compute_functions() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_data_structures(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_eigen_linear_solver(const std::string &float_type, int N)nmodl::codegen::CodegenCppVisitorprotected + print_fast_imem_calculation() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_function(const ast::FunctionBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_function_call(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})nmodl::codegen::CodegenCppVisitor + print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_function_procedure_helper(const ast::Block &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_function_prototypes() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_function_table_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_function_tables(const ast::FunctionTableBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functor_definition(const ast::EigenNewtonSolverBlock &node)nmodl::codegen::CodegenCppVisitorprotected + print_functors_definitions()nmodl::codegen::CodegenCppVisitorprotected + print_g_unused() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_global_function_common_code(BlockType type, const std::string &function_name="") overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_global_macros()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_global_param_default_values()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_global_struct_function_table_ptrs()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_external_access()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_global_var_struct_assertions() constnmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_var_struct_decl()nmodl::codegen::CodegenCppVisitorprotectedvirtual + print_global_variables_for_hoc() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_headers_include() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_hoc_py_wrapper_function_body(const ast::Block *function_or_procedure_block, InterpreterWrapper wrapper_type)nmodl::codegen::CodegenNeuronCppVisitorprotected + print_hoc_py_wrapper_function_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_initial_block(const ast::InitialBlock *node)nmodl::codegen::CodegenNeuronCppVisitorprotected + print_ion_variable() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_macro_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_make_instance() constnmodl::codegen::CodegenNeuronCppVisitorprotected + print_make_node_data() constnmodl::codegen::CodegenNeuronCppVisitorprotected + print_mechanism_global_var_structure(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_mechanism_info()nmodl::codegen::CodegenCppVisitorprotected + print_mechanism_range_var_structure(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorvirtual + print_mechanism_register() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_mechanism_variables_macros()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_namespace_start()nmodl::codegen::CodegenCppVisitorprotected + print_namespace_stop()nmodl::codegen::CodegenCppVisitorprotected + print_net_event_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_net_init()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_net_move_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_net_receive()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_net_receive_common_code()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_net_receive_registration()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_net_send_call(const ast::FunctionCall &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_neuron_global_variable_declarations()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_neuron_includes()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_nmodl_constants()nmodl::codegen::CodegenCppVisitorprotected + print_node_data_structure(bool print_initializers)nmodl::codegen::CodegenNeuronCppVisitor + print_nrn_alloc() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_constructor() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_constructor_declaration()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_nrn_cur() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_cur_kernel(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_cur_non_conductance_kernel() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_current(const ast::BreakpointBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_destructor() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_nrn_destructor_declaration()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenNeuronCppVisitorprotected + print_nrn_jacob()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_nrn_pointing(const ast::FunctionCall &node)nmodl::codegen::CodegenCppVisitorprotectedvirtual print_nrn_state() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual print_point_process_function_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected print_prcellstate_macros() constnmodl::codegen::CodegenCppVisitorprotected diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html index 51ed2b977..19f2466ab 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html @@ -880,6 +880,8 @@ bool is_net_send (const std::string &name) const noexcept  Checks if given function name is net_send. More...
  +bool is_nrn_pointing (const std::string &name) const noexcept +  bool is_net_move (const std::string &name) const noexcept  Checks if given function name is net_move. More...
  @@ -933,6 +935,9 @@ virtual void print_function_call (const ast::FunctionCall &node)  Print call to internal or external function. More...
  +virtual void print_nrn_pointing (const ast::FunctionCall &node) + Print nrn_pointing. More...
+  void print_procedure (const ast::ProcedureBlock &node)  Print NMODL procedure in target backend code. More...
  diff --git a/doxygen/classnmodl_1_1visitor_1_1_semantic_analysis_visitor.html b/doxygen/classnmodl_1_1visitor_1_1_semantic_analysis_visitor.html index 8908d37f2..e1b50a14b 100644 --- a/doxygen/classnmodl_1_1visitor_1_1_semantic_analysis_visitor.html +++ b/doxygen/classnmodl_1_1visitor_1_1_semantic_analysis_visitor.html @@ -717,7 +717,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 258 of file semantic_analysis_visitor.cpp.

+

Definition at line 268 of file semantic_analysis_visitor.cpp.

@@ -819,7 +819,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 282 of file semantic_analysis_visitor.cpp.

+

Definition at line 292 of file semantic_analysis_visitor.cpp.

@@ -853,7 +853,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 269 of file semantic_analysis_visitor.cpp.

+

Definition at line 279 of file semantic_analysis_visitor.cpp.

@@ -887,7 +887,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 304 of file semantic_analysis_visitor.cpp.

+

Definition at line 314 of file semantic_analysis_visitor.cpp.

@@ -921,7 +921,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 316 of file semantic_analysis_visitor.cpp.

+

Definition at line 326 of file semantic_analysis_visitor.cpp.

@@ -1057,7 +1057,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 293 of file semantic_analysis_visitor.cpp.

+

Definition at line 303 of file semantic_analysis_visitor.cpp.

@@ -1092,7 +1092,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 235 of file semantic_analysis_visitor.cpp.

+

Definition at line 245 of file semantic_analysis_visitor.cpp.

diff --git a/doxygen/codegen__acc__visitor_8cpp_source.html b/doxygen/codegen__acc__visitor_8cpp_source.html index 9489ea3c7..0707c38a6 100644 --- a/doxygen/codegen__acc__visitor_8cpp_source.html +++ b/doxygen/codegen__acc__visitor_8cpp_source.html @@ -485,7 +485,7 @@
nmodl::codegen::CodegenAccVisitor::nrn_cur_reduction_loop_required
bool nrn_cur_reduction_loop_required() override
if reduction block in nrn_cur required
Definition: codegen_acc_visitor.cpp:226
nmodl
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
protect_statement.hpp
Auto generated AST classes declaration.
-
nmodl::codegen::naming::NTHREAD_DT_VARIABLE
static constexpr char NTHREAD_DT_VARIABLE[]
dt variable in neuron thread structure
Definition: codegen_naming.hpp:105
+
nmodl::codegen::naming::NTHREAD_DT_VARIABLE
static constexpr char NTHREAD_DT_VARIABLE[]
dt variable in neuron thread structure
Definition: codegen_naming.hpp:108
nmodl::codegen::CodegenAccVisitor::print_device_atomic_capture_annotation
void print_device_atomic_capture_annotation() const override
print atomic capture pragma
Definition: codegen_acc_visitor.cpp:329
nmodl::codegen::CodegenAccVisitor::print_fast_imem_calculation
void print_fast_imem_calculation() override
fast membrane current calculation
Definition: codegen_acc_visitor.cpp:187
nmodl::codegen::CodegenAccVisitor::print_atomic_reduction_pragma
void print_atomic_reduction_pragma() override
atomic update pragma for reduction statements
Definition: codegen_acc_visitor.cpp:58
diff --git a/doxygen/codegen__cpp__visitor_8cpp_source.html b/doxygen/codegen__cpp__visitor_8cpp_source.html index 0e39fb6a3..30370c12e 100644 --- a/doxygen/codegen__cpp__visitor_8cpp_source.html +++ b/doxygen/codegen__cpp__visitor_8cpp_source.html @@ -580,1281 +580,1291 @@
484  function_name = method_name(name);
485  }
486 
-
487  if (is_net_send(name)) {
-
488  print_net_send_call(node);
+
487  if (is_nrn_pointing(name)) {
+
488  print_nrn_pointing(node);
489  return;
490  }
491 
-
492  if (is_net_move(name)) {
-
493  print_net_move_call(node);
+
492  if (is_net_send(name)) {
+
493  print_net_send_call(node);
494  return;
495  }
496 
-
497  if (is_net_event(name)) {
-
498  print_net_event_call(node);
+
497  if (is_net_move(name)) {
+
498  print_net_move_call(node);
499  return;
500  }
501 
-
502  if (is_function_table_call(name)) {
-
503  print_function_table_call(node);
+
502  if (is_net_event(name)) {
+
503  print_net_event_call(node);
504  return;
505  }
506 
-
507  const auto& arguments = node.get_arguments();
-
508  printer->add_text(function_name, '(');
-
509 
-
510  if (defined_method(name)) {
-
511  printer->add_text(internal_method_arguments());
-
512  if (!arguments.empty()) {
-
513  printer->add_text(", ");
-
514  }
-
515  }
-
516 
-
517  // first argument to random functions need to be type casted
-
518  // from void* to nrnran123_State*.
-
519  if (is_random_function && !arguments.empty()) {
-
520  printer->add_text("(nrnran123_State*)");
-
521  }
-
522 
-
523  print_vector_elements(arguments, ", ");
-
524  printer->add_text(')');
-
525 }
-
526 
+
507  if (is_function_table_call(name)) {
+
508  print_function_table_call(node);
+
509  return;
+
510  }
+
511 
+
512  const auto& arguments = node.get_arguments();
+
513  printer->add_text(function_name, '(');
+
514 
+
515  if (defined_method(name)) {
+
516  printer->add_text(internal_method_arguments());
+
517  if (!arguments.empty()) {
+
518  printer->add_text(", ");
+
519  }
+
520  }
+
521 
+
522  // first argument to random functions need to be type casted
+
523  // from void* to nrnran123_State*.
+
524  if (is_random_function && !arguments.empty()) {
+
525  printer->add_text("(nrnran123_State*)");
+
526  }
527 
-
528 void CodegenCppVisitor::print_procedure(const ast::ProcedureBlock& node) {
-
529  print_function_procedure_helper(node);
+
528  print_vector_elements(arguments, ", ");
+
529  printer->add_text(')');
530 }
531 
-
532 
-
533 void CodegenCppVisitor::print_function(const ast::FunctionBlock& node) {
-
534  auto name = node.get_node_name();
-
535 
-
536  // name of return variable
-
537  std::string return_var;
-
538  if (info.function_uses_table(name)) {
-
539  return_var = "ret_f_" + name;
-
540  } else {
-
541  return_var = "ret_" + name;
-
542  }
-
543 
-
544  // first rename return variable name
-
545  auto block = node.get_statement_block().get();
-
546  RenameVisitor v(name, return_var);
-
547  block->accept(v);
-
548 
-
549  print_function_procedure_helper(node);
-
550 }
-
551 
-
552 
-
553 void CodegenCppVisitor::print_function_tables(const ast::FunctionTableBlock& node) {
-
554  auto name = node.get_node_name();
-
555  const auto& p = node.get_parameters();
-
556  auto [params, table_params] = function_table_parameters(node);
-
557  printer->fmt_push_block("double {}({})", method_name(name), get_parameter_str(params));
-
558  printer->fmt_line("double _arg[{}];", p.size());
-
559  for (size_t i = 0; i < p.size(); ++i) {
-
560  printer->fmt_line("_arg[{}] = {};", i, p[i]->get_node_name());
-
561  }
-
562  printer->fmt_line("return hoc_func_table({}, {}, _arg);",
-
563  get_variable_name(std::string("_ptable_" + name), true),
-
564  p.size());
-
565  printer->pop_block();
-
566 
-
567  printer->fmt_push_block("double table_{}({})",
-
568  method_name(name),
-
569  get_parameter_str(table_params));
-
570  printer->fmt_line("hoc_spec_table(&{}, {});",
-
571  get_variable_name(std::string("_ptable_" + name)),
-
572  p.size());
-
573  printer->add_line("return 0.;");
-
574  printer->pop_block();
-
575 }
+
532 void CodegenCppVisitor::print_nrn_pointing(const ast::FunctionCall& node) {
+
533  printer->add_text("nrn_pointing(&");
+
534  print_vector_elements(node.get_arguments(), ", ");
+
535  printer->add_text(")");
+
536 }
+
537 
+
538 void CodegenCppVisitor::print_procedure(const ast::ProcedureBlock& node) {
+
539  print_function_procedure_helper(node);
+
540 }
+
541 
+
542 
+
543 void CodegenCppVisitor::print_function(const ast::FunctionBlock& node) {
+
544  auto name = node.get_node_name();
+
545 
+
546  // name of return variable
+
547  std::string return_var;
+
548  if (info.function_uses_table(name)) {
+
549  return_var = "ret_f_" + name;
+
550  } else {
+
551  return_var = "ret_" + name;
+
552  }
+
553 
+
554  // first rename return variable name
+
555  auto block = node.get_statement_block().get();
+
556  RenameVisitor v(name, return_var);
+
557  block->accept(v);
+
558 
+
559  print_function_procedure_helper(node);
+
560 }
+
561 
+
562 
+
563 void CodegenCppVisitor::print_function_tables(const ast::FunctionTableBlock& node) {
+
564  auto name = node.get_node_name();
+
565  const auto& p = node.get_parameters();
+
566  auto [params, table_params] = function_table_parameters(node);
+
567  printer->fmt_push_block("double {}({})", method_name(name), get_parameter_str(params));
+
568  printer->fmt_line("double _arg[{}];", p.size());
+
569  for (size_t i = 0; i < p.size(); ++i) {
+
570  printer->fmt_line("_arg[{}] = {};", i, p[i]->get_node_name());
+
571  }
+
572  printer->fmt_line("return hoc_func_table({}, {}, _arg);",
+
573  get_variable_name(std::string("_ptable_" + name), true),
+
574  p.size());
+
575  printer->pop_block();
576 
-
577 
-
578 void CodegenCppVisitor::print_prcellstate_macros() const {
-
579  printer->add_line("#ifndef NRN_PRCELLSTATE");
-
580  printer->add_line("#define NRN_PRCELLSTATE 0");
-
581  printer->add_line("#endif");
-
582 }
-
583 
-
584 
-
585 void CodegenCppVisitor::print_mechanism_info() {
-
586  auto variable_printer = [&](const std::vector<SymbolType>& variables) {
-
587  for (const auto& v: variables) {
-
588  auto name = v->get_name();
-
589  if (!info.point_process) {
-
590  name += "_" + info.mod_suffix;
-
591  }
-
592  if (v->is_array()) {
-
593  name += fmt::format("[{}]", v->get_length());
-
594  }
-
595  printer->add_line(add_escape_quote(name), ",");
-
596  }
-
597  };
-
598 
-
599  printer->add_newline(2);
-
600  printer->add_line("/** channel information */");
-
601  printer->fmt_line("static const char *{}[] = {{", get_channel_info_var_name());
-
602  printer->increase_indent();
-
603  printer->add_line(add_escape_quote(nmodl_version()), ",");
-
604  printer->add_line(add_escape_quote(info.mod_suffix), ",");
-
605  variable_printer(info.range_parameter_vars);
-
606  printer->add_line("0,");
-
607  variable_printer(info.range_assigned_vars);
-
608  printer->add_line("0,");
-
609  variable_printer(info.range_state_vars);
-
610  printer->add_line("0,");
-
611  variable_printer(info.pointer_variables);
-
612  printer->add_line("0");
-
613  printer->decrease_indent();
-
614  printer->add_line("};");
-
615 }
-
616 
-
617 void CodegenCppVisitor::print_using_namespace() {
-
618  printer->fmt_line("using namespace {};", namespace_name());
-
619 }
-
620 
-
621 void CodegenCppVisitor::print_namespace_start() {
-
622  printer->add_newline(2);
-
623  printer->fmt_push_block("namespace {}", namespace_name());
-
624 }
-
625 
+
577  printer->fmt_push_block("double table_{}({})",
+
578  method_name(name),
+
579  get_parameter_str(table_params));
+
580  printer->fmt_line("hoc_spec_table(&{}, {});",
+
581  get_variable_name(std::string("_ptable_" + name)),
+
582  p.size());
+
583  printer->add_line("return 0.;");
+
584  printer->pop_block();
+
585 }
+
586 
+
587 
+
588 void CodegenCppVisitor::print_prcellstate_macros() const {
+
589  printer->add_line("#ifndef NRN_PRCELLSTATE");
+
590  printer->add_line("#define NRN_PRCELLSTATE 0");
+
591  printer->add_line("#endif");
+
592 }
+
593 
+
594 
+
595 void CodegenCppVisitor::print_mechanism_info() {
+
596  auto variable_printer = [&](const std::vector<SymbolType>& variables) {
+
597  for (const auto& v: variables) {
+
598  auto name = v->get_name();
+
599  if (!info.point_process) {
+
600  name += "_" + info.mod_suffix;
+
601  }
+
602  if (v->is_array()) {
+
603  name += fmt::format("[{}]", v->get_length());
+
604  }
+
605  printer->add_line(add_escape_quote(name), ",");
+
606  }
+
607  };
+
608 
+
609  printer->add_newline(2);
+
610  printer->add_line("/** channel information */");
+
611  printer->fmt_line("static const char *{}[] = {{", get_channel_info_var_name());
+
612  printer->increase_indent();
+
613  printer->add_line(add_escape_quote(nmodl_version()), ",");
+
614  printer->add_line(add_escape_quote(info.mod_suffix), ",");
+
615  variable_printer(info.range_parameter_vars);
+
616  printer->add_line("0,");
+
617  variable_printer(info.range_assigned_vars);
+
618  printer->add_line("0,");
+
619  variable_printer(info.range_state_vars);
+
620  printer->add_line("0,");
+
621  variable_printer(info.pointer_variables);
+
622  printer->add_line("0");
+
623  printer->decrease_indent();
+
624  printer->add_line("};");
+
625 }
626 
-
627 void CodegenCppVisitor::print_namespace_stop() {
-
628  printer->pop_block();
+
627 void CodegenCppVisitor::print_using_namespace() {
+
628  printer->fmt_line("using namespace {};", namespace_name());
629 }
630 
-
631 
-
632 /****************************************************************************************/
-
633 /* Printing routines for code generation */
-
634 /****************************************************************************************/
+
631 void CodegenCppVisitor::print_namespace_start() {
+
632  printer->add_newline(2);
+
633  printer->fmt_push_block("namespace {}", namespace_name());
+
634 }
635 
636 
-
637 void CodegenCppVisitor::print_statement_block(const ast::StatementBlock& node,
-
638  bool open_brace,
-
639  bool close_brace) {
-
640  if (open_brace) {
-
641  printer->push_block();
-
642  }
-
643 
-
644  const auto& statements = node.get_statements();
-
645  for (const auto& statement: statements) {
-
646  if (statement_to_skip(*statement)) {
-
647  continue;
-
648  }
-
649  /// not necessary to add indent for verbatim block (pretty-printing)
-
650  if (!statement->is_verbatim() && !statement->is_mutex_lock() &&
-
651  !statement->is_mutex_unlock() && !statement->is_protect_statement()) {
-
652  printer->add_indent();
-
653  }
-
654  statement->accept(*this);
-
655  if (need_semicolon(*statement)) {
-
656  printer->add_text(';');
-
657  }
-
658  if (!statement->is_mutex_lock() && !statement->is_mutex_unlock()) {
-
659  printer->add_newline();
-
660  }
-
661  }
-
662 
-
663  if (close_brace) {
-
664  printer->pop_block_nl(0);
-
665  }
-
666 }
-
667 
-
668 
-
669 bool CodegenCppVisitor::is_functor_const(const ast::StatementBlock& variable_block,
-
670  const ast::StatementBlock& functor_block) {
-
671  // Create complete_block with both variable declarations (done in variable_block) and solver
-
672  // part (done in functor_block) to be able to run the SymtabVisitor and DefUseAnalyzeVisitor
-
673  // then and get the proper DUChains for the variables defined in the variable_block
-
674  ast::StatementBlock complete_block(functor_block);
-
675  // Typically variable_block has only one statement, a statement containing the declaration
-
676  // of the local variables
-
677  for (const auto& statement: variable_block.get_statements()) {
-
678  complete_block.insert_statement(complete_block.get_statements().begin(), statement);
-
679  }
-
680 
-
681  // Create Symbol Table for complete_block
-
682  auto model_symbol_table = std::make_shared<symtab::ModelSymbolTable>();
-
683  SymtabVisitor(model_symbol_table.get()).visit_statement_block(complete_block);
-
684  // Initialize DefUseAnalyzeVisitor to generate the DUChains for the variables defined in the
-
685  // variable_block
-
686  DefUseAnalyzeVisitor v(*complete_block.get_symbol_table());
-
687 
-
688  // Check the DUChains for all the variables in the variable_block
-
689  // If variable is defined in complete_block don't add const quilifier in operator()
-
690  auto is_functor_const = true;
-
691  const auto& variables = collect_nodes(variable_block, {ast::AstNodeType::LOCAL_VAR});
-
692  for (const auto& variable: variables) {
-
693  const auto& chain = v.analyze(complete_block, variable->get_node_name());
-
694  is_functor_const = !(chain.eval() == DUState::D || chain.eval() == DUState::LD ||
-
695  chain.eval() == DUState::CD);
-
696  if (!is_functor_const) {
-
697  break;
-
698  }
-
699  }
-
700 
-
701  return is_functor_const;
-
702 }
-
703 
-
704 
-
705 void CodegenCppVisitor::print_functors_definitions() {
-
706  for (const auto& functor_name: info.functor_names) {
-
707  printer->add_newline(2);
-
708  print_functor_definition(*functor_name.first);
+
637 void CodegenCppVisitor::print_namespace_stop() {
+
638  printer->pop_block();
+
639 }
+
640 
+
641 
+
642 /****************************************************************************************/
+
643 /* Printing routines for code generation */
+
644 /****************************************************************************************/
+
645 
+
646 
+
647 void CodegenCppVisitor::print_statement_block(const ast::StatementBlock& node,
+
648  bool open_brace,
+
649  bool close_brace) {
+
650  if (open_brace) {
+
651  printer->push_block();
+
652  }
+
653 
+
654  const auto& statements = node.get_statements();
+
655  for (const auto& statement: statements) {
+
656  if (statement_to_skip(*statement)) {
+
657  continue;
+
658  }
+
659  /// not necessary to add indent for verbatim block (pretty-printing)
+
660  if (!statement->is_verbatim() && !statement->is_mutex_lock() &&
+
661  !statement->is_mutex_unlock() && !statement->is_protect_statement()) {
+
662  printer->add_indent();
+
663  }
+
664  statement->accept(*this);
+
665  if (need_semicolon(*statement)) {
+
666  printer->add_text(';');
+
667  }
+
668  if (!statement->is_mutex_lock() && !statement->is_mutex_unlock()) {
+
669  printer->add_newline();
+
670  }
+
671  }
+
672 
+
673  if (close_brace) {
+
674  printer->pop_block_nl(0);
+
675  }
+
676 }
+
677 
+
678 
+
679 bool CodegenCppVisitor::is_functor_const(const ast::StatementBlock& variable_block,
+
680  const ast::StatementBlock& functor_block) {
+
681  // Create complete_block with both variable declarations (done in variable_block) and solver
+
682  // part (done in functor_block) to be able to run the SymtabVisitor and DefUseAnalyzeVisitor
+
683  // then and get the proper DUChains for the variables defined in the variable_block
+
684  ast::StatementBlock complete_block(functor_block);
+
685  // Typically variable_block has only one statement, a statement containing the declaration
+
686  // of the local variables
+
687  for (const auto& statement: variable_block.get_statements()) {
+
688  complete_block.insert_statement(complete_block.get_statements().begin(), statement);
+
689  }
+
690 
+
691  // Create Symbol Table for complete_block
+
692  auto model_symbol_table = std::make_shared<symtab::ModelSymbolTable>();
+
693  SymtabVisitor(model_symbol_table.get()).visit_statement_block(complete_block);
+
694  // Initialize DefUseAnalyzeVisitor to generate the DUChains for the variables defined in the
+
695  // variable_block
+
696  DefUseAnalyzeVisitor v(*complete_block.get_symbol_table());
+
697 
+
698  // Check the DUChains for all the variables in the variable_block
+
699  // If variable is defined in complete_block don't add const quilifier in operator()
+
700  auto is_functor_const = true;
+
701  const auto& variables = collect_nodes(variable_block, {ast::AstNodeType::LOCAL_VAR});
+
702  for (const auto& variable: variables) {
+
703  const auto& chain = v.analyze(complete_block, variable->get_node_name());
+
704  is_functor_const = !(chain.eval() == DUState::D || chain.eval() == DUState::LD ||
+
705  chain.eval() == DUState::CD);
+
706  if (!is_functor_const) {
+
707  break;
+
708  }
709  }
-
710 }
-
711 
-
712 void CodegenCppVisitor::print_functor_definition(const ast::EigenNewtonSolverBlock& node) {
-
713  // functor that evaluates F(X) and J(X) for
-
714  // Newton solver
-
715  auto float_type = default_float_data_type();
-
716  int N = node.get_n_state_vars()->get_value();
-
717 
-
718  const auto functor_name = info.functor_names[&node];
-
719  printer->fmt_push_block("struct {}", functor_name);
-
720 
-
721  auto params = functor_params();
-
722  for (const auto& param: params) {
-
723  printer->fmt_line("{}{} {};", std::get<0>(param), std::get<1>(param), std::get<3>(param));
-
724  }
-
725 
-
726  if (ion_variable_struct_required()) {
-
727  print_ion_variable();
-
728  }
-
729 
-
730  print_statement_block(*node.get_variable_block(), false, false);
-
731  printer->add_newline();
-
732 
-
733  printer->push_block("void initialize()");
-
734  print_statement_block(*node.get_initialize_block(), false, false);
-
735  printer->pop_block();
-
736  printer->add_newline();
-
737 
-
738  printer->fmt_line("{}({})", functor_name, get_parameter_str(params));
-
739  printer->increase_indent();
-
740  auto initializers = std::vector<std::string>();
-
741  for (const auto& param: params) {
-
742  initializers.push_back(fmt::format("{0}({0})", std::get<3>(param)));
-
743  }
-
744 
-
745  printer->add_multi_line(": " + fmt::format("{}", fmt::join(initializers, ", ")));
-
746  printer->decrease_indent();
-
747  printer->add_line("{}");
-
748 
-
749  printer->add_indent();
-
750 
-
751  const auto& variable_block = *node.get_variable_block();
-
752  const auto& functor_block = *node.get_functor_block();
-
753 
-
754  printer->fmt_text(
-
755  "void operator()(const Eigen::Matrix<{0}, {1}, 1>& nmodl_eigen_xm, Eigen::Matrix<{0}, {1}, "
-
756  "1>& nmodl_eigen_dxm, Eigen::Matrix<{0}, {1}, "
-
757  "1>& nmodl_eigen_fm, "
-
758  "Eigen::Matrix<{0}, {1}, {1}>& nmodl_eigen_jm) {2}",
-
759  float_type,
-
760  N,
-
761  is_functor_const(variable_block, functor_block) ? "const " : "");
-
762  printer->push_block();
-
763  printer->fmt_line("const {}* nmodl_eigen_x = nmodl_eigen_xm.data();", float_type);
-
764  printer->fmt_line("{}* nmodl_eigen_dx = nmodl_eigen_dxm.data();", float_type);
-
765  printer->fmt_line("{}* nmodl_eigen_j = nmodl_eigen_jm.data();", float_type);
-
766  printer->fmt_line("{}* nmodl_eigen_f = nmodl_eigen_fm.data();", float_type);
-
767 
-
768  for (size_t i = 0; i < N; ++i) {
-
769  printer->fmt_line(
-
770  "nmodl_eigen_dx[{0}] = std::max(1e-6, 0.02*std::fabs(nmodl_eigen_x[{0}]));", i);
-
771  }
-
772 
-
773  print_statement_block(functor_block, false, false);
-
774  printer->pop_block();
-
775  printer->add_newline();
-
776 
-
777  // assign newton solver results in matrix X to state vars
-
778  printer->push_block("void finalize()");
-
779  print_statement_block(*node.get_finalize_block(), false, false);
-
780  printer->pop_block();
-
781 
-
782  printer->pop_block(";");
-
783 }
-
784 
-
785 
-
786 void CodegenCppVisitor::print_eigen_linear_solver(const std::string& float_type, int N) {
-
787  if (N <= 4) {
-
788  // Faster compared to LU, given the template specialization in Eigen.
-
789  printer->add_multi_line(R"CODE(
-
790  bool invertible;
-
791  nmodl_eigen_jm.computeInverseWithCheck(nmodl_eigen_jm_inv,invertible);
-
792  nmodl_eigen_xm = nmodl_eigen_jm_inv*nmodl_eigen_fm;
-
793  if (!invertible) assert(false && "Singular or ill-conditioned matrix (Eigen::inverse)!");
-
794  )CODE");
-
795  } else {
-
796  // In Eigen the default storage order is ColMajor.
-
797  // Crout's implementation requires matrices stored in RowMajor order (C++-style arrays).
-
798  // Therefore, the transposeInPlace is critical such that the data() method to give the rows
-
799  // instead of the columns.
-
800  printer->add_line("if (!nmodl_eigen_jm.IsRowMajor) nmodl_eigen_jm.transposeInPlace();");
-
801 
-
802  // pivot vector
-
803  printer->fmt_line("Eigen::Matrix<int, {}, 1> pivot;", N);
-
804  printer->fmt_line("Eigen::Matrix<{0}, {1}, 1> rowmax;", float_type, N);
-
805 
-
806  // In-place LU-Decomposition (Crout Algo) : Jm is replaced by its LU-decomposition
-
807  printer->fmt_line(
-
808  "if (nmodl::crout::Crout<{0}>({1}, nmodl_eigen_jm.data(), pivot.data(), rowmax.data()) "
-
809  "< 0) assert(false && \"Singular or ill-conditioned matrix (nmodl::crout)!\");",
-
810  float_type,
-
811  N);
-
812 
-
813  // Solve the linear system : Forward/Backward substitution part
-
814  printer->fmt_line(
-
815  "nmodl::crout::solveCrout<{0}>({1}, nmodl_eigen_jm.data(), nmodl_eigen_fm.data(), "
-
816  "nmodl_eigen_xm.data(), pivot.data());",
-
817  float_type,
-
818  N);
-
819  }
-
820 }
-
821 
+
710 
+
711  return is_functor_const;
+
712 }
+
713 
+
714 
+
715 void CodegenCppVisitor::print_functors_definitions() {
+
716  for (const auto& functor_name: info.functor_names) {
+
717  printer->add_newline(2);
+
718  print_functor_definition(*functor_name.first);
+
719  }
+
720 }
+
721 
+
722 void CodegenCppVisitor::print_functor_definition(const ast::EigenNewtonSolverBlock& node) {
+
723  // functor that evaluates F(X) and J(X) for
+
724  // Newton solver
+
725  auto float_type = default_float_data_type();
+
726  int N = node.get_n_state_vars()->get_value();
+
727 
+
728  const auto functor_name = info.functor_names[&node];
+
729  printer->fmt_push_block("struct {}", functor_name);
+
730 
+
731  auto params = functor_params();
+
732  for (const auto& param: params) {
+
733  printer->fmt_line("{}{} {};", std::get<0>(param), std::get<1>(param), std::get<3>(param));
+
734  }
+
735 
+
736  if (ion_variable_struct_required()) {
+
737  print_ion_variable();
+
738  }
+
739 
+
740  print_statement_block(*node.get_variable_block(), false, false);
+
741  printer->add_newline();
+
742 
+
743  printer->push_block("void initialize()");
+
744  print_statement_block(*node.get_initialize_block(), false, false);
+
745  printer->pop_block();
+
746  printer->add_newline();
+
747 
+
748  printer->fmt_line("{}({})", functor_name, get_parameter_str(params));
+
749  printer->increase_indent();
+
750  auto initializers = std::vector<std::string>();
+
751  for (const auto& param: params) {
+
752  initializers.push_back(fmt::format("{0}({0})", std::get<3>(param)));
+
753  }
+
754 
+
755  printer->add_multi_line(": " + fmt::format("{}", fmt::join(initializers, ", ")));
+
756  printer->decrease_indent();
+
757  printer->add_line("{}");
+
758 
+
759  printer->add_indent();
+
760 
+
761  const auto& variable_block = *node.get_variable_block();
+
762  const auto& functor_block = *node.get_functor_block();
+
763 
+
764  printer->fmt_text(
+
765  "void operator()(const Eigen::Matrix<{0}, {1}, 1>& nmodl_eigen_xm, Eigen::Matrix<{0}, {1}, "
+
766  "1>& nmodl_eigen_dxm, Eigen::Matrix<{0}, {1}, "
+
767  "1>& nmodl_eigen_fm, "
+
768  "Eigen::Matrix<{0}, {1}, {1}>& nmodl_eigen_jm) {2}",
+
769  float_type,
+
770  N,
+
771  is_functor_const(variable_block, functor_block) ? "const " : "");
+
772  printer->push_block();
+
773  printer->fmt_line("const {}* nmodl_eigen_x = nmodl_eigen_xm.data();", float_type);
+
774  printer->fmt_line("{}* nmodl_eigen_dx = nmodl_eigen_dxm.data();", float_type);
+
775  printer->fmt_line("{}* nmodl_eigen_j = nmodl_eigen_jm.data();", float_type);
+
776  printer->fmt_line("{}* nmodl_eigen_f = nmodl_eigen_fm.data();", float_type);
+
777 
+
778  for (size_t i = 0; i < N; ++i) {
+
779  printer->fmt_line(
+
780  "nmodl_eigen_dx[{0}] = std::max(1e-6, 0.02*std::fabs(nmodl_eigen_x[{0}]));", i);
+
781  }
+
782 
+
783  print_statement_block(functor_block, false, false);
+
784  printer->pop_block();
+
785  printer->add_newline();
+
786 
+
787  // assign newton solver results in matrix X to state vars
+
788  printer->push_block("void finalize()");
+
789  print_statement_block(*node.get_finalize_block(), false, false);
+
790  printer->pop_block();
+
791 
+
792  printer->pop_block(";");
+
793 }
+
794 
+
795 
+
796 void CodegenCppVisitor::print_eigen_linear_solver(const std::string& float_type, int N) {
+
797  if (N <= 4) {
+
798  // Faster compared to LU, given the template specialization in Eigen.
+
799  printer->add_multi_line(R"CODE(
+
800  bool invertible;
+
801  nmodl_eigen_jm.computeInverseWithCheck(nmodl_eigen_jm_inv,invertible);
+
802  nmodl_eigen_xm = nmodl_eigen_jm_inv*nmodl_eigen_fm;
+
803  if (!invertible) assert(false && "Singular or ill-conditioned matrix (Eigen::inverse)!");
+
804  )CODE");
+
805  } else {
+
806  // In Eigen the default storage order is ColMajor.
+
807  // Crout's implementation requires matrices stored in RowMajor order (C++-style arrays).
+
808  // Therefore, the transposeInPlace is critical such that the data() method to give the rows
+
809  // instead of the columns.
+
810  printer->add_line("if (!nmodl_eigen_jm.IsRowMajor) nmodl_eigen_jm.transposeInPlace();");
+
811 
+
812  // pivot vector
+
813  printer->fmt_line("Eigen::Matrix<int, {}, 1> pivot;", N);
+
814  printer->fmt_line("Eigen::Matrix<{0}, {1}, 1> rowmax;", float_type, N);
+
815 
+
816  // In-place LU-Decomposition (Crout Algo) : Jm is replaced by its LU-decomposition
+
817  printer->fmt_line(
+
818  "if (nmodl::crout::Crout<{0}>({1}, nmodl_eigen_jm.data(), pivot.data(), rowmax.data()) "
+
819  "< 0) assert(false && \"Singular or ill-conditioned matrix (nmodl::crout)!\");",
+
820  float_type,
+
821  N);
822 
-
823 /****************************************************************************************/
-
824 /* Main code printing entry points */
-
825 /****************************************************************************************/
-
826 
-
827 
-
828 /**
-
829  * NMODL constants from unit database
-
830  *
-
831  */
-
832 void CodegenCppVisitor::print_nmodl_constants() {
-
833  if (!info.factor_definitions.empty()) {
-
834  printer->add_newline(2);
-
835  printer->add_line("/** constants used in nmodl from UNITS */");
-
836  for (const auto& it: info.factor_definitions) {
-
837  const std::string format_string = "static const double {} = {};";
-
838  printer->fmt_line(format_string, it->get_node_name(), it->get_value()->get_value());
-
839  }
-
840  }
-
841 }
-
842 
-
843 
-
844 /****************************************************************************************/
-
845 /* Overloaded visitor routines */
-
846 /****************************************************************************************/
-
847 
-
848 
-
849 extern const std::regex regex_special_chars{R"([-[\]{}()*+?.,\^$|#\s])"};
-
850 
-
851 
-
852 void CodegenCppVisitor::visit_string(const String& node) {
-
853  std::string name = node.eval();
-
854  if (enable_variable_name_lookup) {
-
855  name = get_variable_name(name);
-
856  }
-
857  printer->add_text(name);
-
858 }
-
859 
-
860 
-
861 void CodegenCppVisitor::visit_integer(const Integer& node) {
-
862  const auto& value = node.get_value();
-
863  printer->add_text(std::to_string(value));
-
864 }
-
865 
-
866 
-
867 void CodegenCppVisitor::visit_float(const Float& node) {
-
868  printer->add_text(format_float_string(node.get_value()));
-
869 }
+
823  // Solve the linear system : Forward/Backward substitution part
+
824  printer->fmt_line(
+
825  "nmodl::crout::solveCrout<{0}>({1}, nmodl_eigen_jm.data(), nmodl_eigen_fm.data(), "
+
826  "nmodl_eigen_xm.data(), pivot.data());",
+
827  float_type,
+
828  N);
+
829  }
+
830 }
+
831 
+
832 
+
833 /****************************************************************************************/
+
834 /* Main code printing entry points */
+
835 /****************************************************************************************/
+
836 
+
837 
+
838 /**
+
839  * NMODL constants from unit database
+
840  *
+
841  */
+
842 void CodegenCppVisitor::print_nmodl_constants() {
+
843  if (!info.factor_definitions.empty()) {
+
844  printer->add_newline(2);
+
845  printer->add_line("/** constants used in nmodl from UNITS */");
+
846  for (const auto& it: info.factor_definitions) {
+
847  const std::string format_string = "static const double {} = {};";
+
848  printer->fmt_line(format_string, it->get_node_name(), it->get_value()->get_value());
+
849  }
+
850  }
+
851 }
+
852 
+
853 
+
854 /****************************************************************************************/
+
855 /* Overloaded visitor routines */
+
856 /****************************************************************************************/
+
857 
+
858 
+
859 extern const std::regex regex_special_chars{R"([-[\]{}()*+?.,\^$|#\s])"};
+
860 
+
861 
+
862 void CodegenCppVisitor::visit_string(const String& node) {
+
863  std::string name = node.eval();
+
864  if (enable_variable_name_lookup) {
+
865  name = get_variable_name(name);
+
866  }
+
867  printer->add_text(name);
+
868 }
+
869 
870 
-
871 
-
872 void CodegenCppVisitor::visit_double(const Double& node) {
-
873  printer->add_text(format_double_string(node.get_value()));
+
871 void CodegenCppVisitor::visit_integer(const Integer& node) {
+
872  const auto& value = node.get_value();
+
873  printer->add_text(std::to_string(value));
874 }
875 
876 
-
877 void CodegenCppVisitor::visit_boolean(const Boolean& node) {
-
878  printer->add_text(std::to_string(static_cast<int>(node.eval())));
+
877 void CodegenCppVisitor::visit_float(const Float& node) {
+
878  printer->add_text(format_float_string(node.get_value()));
879 }
880 
881 
-
882 void CodegenCppVisitor::visit_name(const Name& node) {
-
883  node.visit_children(*this);
+
882 void CodegenCppVisitor::visit_double(const Double& node) {
+
883  printer->add_text(format_double_string(node.get_value()));
884 }
885 
886 
-
887 void CodegenCppVisitor::visit_unit(const ast::Unit& node) {
-
888  // do not print units
+
887 void CodegenCppVisitor::visit_boolean(const Boolean& node) {
+
888  printer->add_text(std::to_string(static_cast<int>(node.eval())));
889 }
890 
891 
-
892 void CodegenCppVisitor::visit_prime_name(const PrimeName& /* node */) {
-
893  throw std::runtime_error("PRIME encountered during code generation, ODEs not solved?");
+
892 void CodegenCppVisitor::visit_name(const Name& node) {
+
893  node.visit_children(*this);
894 }
895 
-
896 
-
897 /**
-
898  * \todo : Validate how @ is being handled in neuron implementation
-
899  */
-
900 void CodegenCppVisitor::visit_var_name(const VarName& node) {
-
901  const auto& name = node.get_name();
-
902  const auto& at_index = node.get_at();
-
903  const auto& index = node.get_index();
-
904  name->accept(*this);
-
905  if (at_index) {
-
906  printer->add_text("@");
-
907  at_index->accept(*this);
-
908  }
-
909  if (index) {
-
910  printer->add_text("[");
-
911  printer->add_text("static_cast<int>(");
-
912  index->accept(*this);
-
913  printer->add_text(")");
-
914  printer->add_text("]");
-
915  }
-
916 }
-
917 
-
918 
-
919 void CodegenCppVisitor::visit_indexed_name(const IndexedName& node) {
-
920  node.get_name()->accept(*this);
-
921  printer->add_text("[");
-
922  printer->add_text("static_cast<int>(");
-
923  node.get_length()->accept(*this);
-
924  printer->add_text(")");
-
925  printer->add_text("]");
+
896 
+
897 void CodegenCppVisitor::visit_unit(const ast::Unit& node) {
+
898  // do not print units
+
899 }
+
900 
+
901 
+
902 void CodegenCppVisitor::visit_prime_name(const PrimeName& /* node */) {
+
903  throw std::runtime_error("PRIME encountered during code generation, ODEs not solved?");
+
904 }
+
905 
+
906 
+
907 /**
+
908  * \todo : Validate how @ is being handled in neuron implementation
+
909  */
+
910 void CodegenCppVisitor::visit_var_name(const VarName& node) {
+
911  const auto& name = node.get_name();
+
912  const auto& at_index = node.get_at();
+
913  const auto& index = node.get_index();
+
914  name->accept(*this);
+
915  if (at_index) {
+
916  printer->add_text("@");
+
917  at_index->accept(*this);
+
918  }
+
919  if (index) {
+
920  printer->add_text("[");
+
921  printer->add_text("static_cast<int>(");
+
922  index->accept(*this);
+
923  printer->add_text(")");
+
924  printer->add_text("]");
+
925  }
926 }
927 
928 
-
929 void CodegenCppVisitor::visit_local_list_statement(const LocalListStatement& node) {
-
930  printer->add_text(local_var_type(), ' ');
-
931  print_vector_elements(node.get_variables(), ", ");
-
932 }
-
933 
-
934 
-
935 void CodegenCppVisitor::visit_if_statement(const IfStatement& node) {
-
936  printer->add_text("if (");
-
937  node.get_condition()->accept(*this);
-
938  printer->add_text(") ");
-
939  node.get_statement_block()->accept(*this);
-
940  print_vector_elements(node.get_elseifs(), "");
-
941  const auto& elses = node.get_elses();
-
942  if (elses) {
-
943  elses->accept(*this);
-
944  }
-
945 }
-
946 
-
947 
-
948 void CodegenCppVisitor::visit_else_if_statement(const ElseIfStatement& node) {
-
949  printer->add_text(" else if (");
-
950  node.get_condition()->accept(*this);
-
951  printer->add_text(") ");
-
952  node.get_statement_block()->accept(*this);
-
953 }
-
954 
-
955 
-
956 void CodegenCppVisitor::visit_else_statement(const ElseStatement& node) {
-
957  printer->add_text(" else ");
-
958  node.visit_children(*this);
-
959 }
-
960 
-
961 
-
962 void CodegenCppVisitor::visit_while_statement(const WhileStatement& node) {
-
963  printer->add_text("while (");
-
964  node.get_condition()->accept(*this);
-
965  printer->add_text(") ");
-
966  node.get_statement_block()->accept(*this);
-
967 }
-
968 
-
969 
-
970 void CodegenCppVisitor::visit_from_statement(const ast::FromStatement& node) {
-
971  auto name = node.get_node_name();
-
972  const auto& from = node.get_from();
-
973  const auto& to = node.get_to();
-
974  const auto& inc = node.get_increment();
-
975  const auto& block = node.get_statement_block();
-
976  printer->fmt_text("for (int {} = ", name);
-
977  from->accept(*this);
-
978  printer->fmt_text("; {} <= ", name);
-
979  to->accept(*this);
-
980  if (inc) {
-
981  printer->fmt_text("; {} += ", name);
-
982  inc->accept(*this);
-
983  } else {
-
984  printer->fmt_text("; {}++", name);
-
985  }
-
986  printer->add_text(") ");
-
987  block->accept(*this);
-
988 }
-
989 
-
990 
-
991 void CodegenCppVisitor::visit_paren_expression(const ParenExpression& node) {
-
992  printer->add_text("(");
-
993  node.get_expression()->accept(*this);
-
994  printer->add_text(")");
-
995 }
-
996 
-
997 
-
998 void CodegenCppVisitor::visit_binary_expression(const BinaryExpression& node) {
-
999  auto op = node.get_op().eval();
-
1000  const auto& lhs = node.get_lhs();
-
1001  const auto& rhs = node.get_rhs();
-
1002  if (op == "^") {
-
1003  printer->add_text("pow(");
-
1004  lhs->accept(*this);
-
1005  printer->add_text(", ");
-
1006  rhs->accept(*this);
-
1007  printer->add_text(")");
-
1008  } else {
-
1009  lhs->accept(*this);
-
1010  printer->add_text(" " + op + " ");
-
1011  rhs->accept(*this);
-
1012  }
-
1013 }
-
1014 
-
1015 
-
1016 void CodegenCppVisitor::visit_binary_operator(const BinaryOperator& node) {
-
1017  printer->add_text(node.eval());
-
1018 }
-
1019 
-
1020 
-
1021 void CodegenCppVisitor::visit_unary_operator(const UnaryOperator& node) {
-
1022  printer->add_text(" " + node.eval());
+
929 void CodegenCppVisitor::visit_indexed_name(const IndexedName& node) {
+
930  node.get_name()->accept(*this);
+
931  printer->add_text("[");
+
932  printer->add_text("static_cast<int>(");
+
933  node.get_length()->accept(*this);
+
934  printer->add_text(")");
+
935  printer->add_text("]");
+
936 }
+
937 
+
938 
+
939 void CodegenCppVisitor::visit_local_list_statement(const LocalListStatement& node) {
+
940  printer->add_text(local_var_type(), ' ');
+
941  print_vector_elements(node.get_variables(), ", ");
+
942 }
+
943 
+
944 
+
945 void CodegenCppVisitor::visit_if_statement(const IfStatement& node) {
+
946  printer->add_text("if (");
+
947  node.get_condition()->accept(*this);
+
948  printer->add_text(") ");
+
949  node.get_statement_block()->accept(*this);
+
950  print_vector_elements(node.get_elseifs(), "");
+
951  const auto& elses = node.get_elses();
+
952  if (elses) {
+
953  elses->accept(*this);
+
954  }
+
955 }
+
956 
+
957 
+
958 void CodegenCppVisitor::visit_else_if_statement(const ElseIfStatement& node) {
+
959  printer->add_text(" else if (");
+
960  node.get_condition()->accept(*this);
+
961  printer->add_text(") ");
+
962  node.get_statement_block()->accept(*this);
+
963 }
+
964 
+
965 
+
966 void CodegenCppVisitor::visit_else_statement(const ElseStatement& node) {
+
967  printer->add_text(" else ");
+
968  node.visit_children(*this);
+
969 }
+
970 
+
971 
+
972 void CodegenCppVisitor::visit_while_statement(const WhileStatement& node) {
+
973  printer->add_text("while (");
+
974  node.get_condition()->accept(*this);
+
975  printer->add_text(") ");
+
976  node.get_statement_block()->accept(*this);
+
977 }
+
978 
+
979 
+
980 void CodegenCppVisitor::visit_from_statement(const ast::FromStatement& node) {
+
981  auto name = node.get_node_name();
+
982  const auto& from = node.get_from();
+
983  const auto& to = node.get_to();
+
984  const auto& inc = node.get_increment();
+
985  const auto& block = node.get_statement_block();
+
986  printer->fmt_text("for (int {} = ", name);
+
987  from->accept(*this);
+
988  printer->fmt_text("; {} <= ", name);
+
989  to->accept(*this);
+
990  if (inc) {
+
991  printer->fmt_text("; {} += ", name);
+
992  inc->accept(*this);
+
993  } else {
+
994  printer->fmt_text("; {}++", name);
+
995  }
+
996  printer->add_text(") ");
+
997  block->accept(*this);
+
998 }
+
999 
+
1000 
+
1001 void CodegenCppVisitor::visit_paren_expression(const ParenExpression& node) {
+
1002  printer->add_text("(");
+
1003  node.get_expression()->accept(*this);
+
1004  printer->add_text(")");
+
1005 }
+
1006 
+
1007 
+
1008 void CodegenCppVisitor::visit_binary_expression(const BinaryExpression& node) {
+
1009  auto op = node.get_op().eval();
+
1010  const auto& lhs = node.get_lhs();
+
1011  const auto& rhs = node.get_rhs();
+
1012  if (op == "^") {
+
1013  printer->add_text("pow(");
+
1014  lhs->accept(*this);
+
1015  printer->add_text(", ");
+
1016  rhs->accept(*this);
+
1017  printer->add_text(")");
+
1018  } else {
+
1019  lhs->accept(*this);
+
1020  printer->add_text(" " + op + " ");
+
1021  rhs->accept(*this);
+
1022  }
1023 }
1024 
-
1025 
-
1026 /**
-
1027  * \details Statement block is top level construct (for every nmodl block).
-
1028  * Sometime we want to analyse ast nodes even if code generation is
-
1029  * false. Hence we visit children even if code generation is false.
-
1030  */
-
1031 void CodegenCppVisitor::visit_statement_block(const StatementBlock& node) {
-
1032  print_statement_block(node);
+
1025 
+
1026 void CodegenCppVisitor::visit_binary_operator(const BinaryOperator& node) {
+
1027  printer->add_text(node.eval());
+
1028 }
+
1029 
+
1030 
+
1031 void CodegenCppVisitor::visit_unary_operator(const UnaryOperator& node) {
+
1032  printer->add_text(" " + node.eval());
1033 }
1034 
-
1035 
-
1036 void CodegenCppVisitor::visit_function_call(const FunctionCall& node) {
-
1037  print_function_call(node);
-
1038 }
-
1039 
-
1040 
-
1041 void CodegenCppVisitor::visit_verbatim(const Verbatim& node) {
-
1042  const auto& text = node.get_statement()->eval();
-
1043  printer->add_line("// VERBATIM");
-
1044  const auto& result = process_verbatim_text(text);
+
1035 
+
1036 /**
+
1037  * \details Statement block is top level construct (for every nmodl block).
+
1038  * Sometime we want to analyse ast nodes even if code generation is
+
1039  * false. Hence we visit children even if code generation is false.
+
1040  */
+
1041 void CodegenCppVisitor::visit_statement_block(const StatementBlock& node) {
+
1042  print_statement_block(node);
+
1043 }
+
1044 
1045 
-
1046  const auto& statements = stringutils::split_string(result, '\n');
-
1047  for (const auto& statement: statements) {
-
1048  const auto& trimed_stmt = stringutils::trim_newline(statement);
-
1049  if (trimed_stmt.find_first_not_of(' ') != std::string::npos) {
-
1050  printer->add_line(trimed_stmt);
-
1051  }
-
1052  }
-
1053  printer->add_line("// ENDVERBATIM");
-
1054 }
+
1046 void CodegenCppVisitor::visit_function_call(const FunctionCall& node) {
+
1047  print_function_call(node);
+
1048 }
+
1049 
+
1050 
+
1051 void CodegenCppVisitor::visit_verbatim(const Verbatim& node) {
+
1052  const auto& text = node.get_statement()->eval();
+
1053  printer->add_line("// VERBATIM");
+
1054  const auto& result = process_verbatim_text(text);
1055 
-
1056 
-
1057 void CodegenCppVisitor::visit_update_dt(const ast::UpdateDt& node) {
-
1058  // dt change statement should be pulled outside already
-
1059 }
-
1060 
-
1061 
-
1062 void CodegenCppVisitor::visit_protect_statement(const ast::ProtectStatement& node) {
-
1063  print_atomic_reduction_pragma();
-
1064  printer->add_indent();
-
1065  node.get_expression()->accept(*this);
-
1066  printer->add_text(";");
-
1067 }
-
1068 
-
1069 
-
1070 void CodegenCppVisitor::visit_mutex_lock(const ast::MutexLock& node) {
-
1071  printer->fmt_line("#pragma omp critical ({})", info.mod_suffix);
-
1072  printer->add_indent();
-
1073  printer->push_block();
-
1074 }
-
1075 
-
1076 
-
1077 void CodegenCppVisitor::visit_mutex_unlock(const ast::MutexUnlock& node) {
-
1078  printer->pop_block();
-
1079 }
-
1080 
-
1081 
-
1082 void CodegenCppVisitor::visit_solution_expression(const SolutionExpression& node) {
-
1083  auto block = node.get_node_to_solve().get();
-
1084  if (block->is_statement_block()) {
-
1085  auto statement_block = dynamic_cast<ast::StatementBlock*>(block);
-
1086  print_statement_block(*statement_block, false, false);
-
1087  } else {
-
1088  block->accept(*this);
-
1089  }
-
1090 }
+
1056  const auto& statements = stringutils::split_string(result, '\n');
+
1057  for (const auto& statement: statements) {
+
1058  const auto& trimed_stmt = stringutils::trim_newline(statement);
+
1059  if (trimed_stmt.find_first_not_of(' ') != std::string::npos) {
+
1060  printer->add_line(trimed_stmt);
+
1061  }
+
1062  }
+
1063  printer->add_line("// ENDVERBATIM");
+
1064 }
+
1065 
+
1066 
+
1067 void CodegenCppVisitor::visit_update_dt(const ast::UpdateDt& node) {
+
1068  // dt change statement should be pulled outside already
+
1069 }
+
1070 
+
1071 
+
1072 void CodegenCppVisitor::visit_protect_statement(const ast::ProtectStatement& node) {
+
1073  print_atomic_reduction_pragma();
+
1074  printer->add_indent();
+
1075  node.get_expression()->accept(*this);
+
1076  printer->add_text(";");
+
1077 }
+
1078 
+
1079 
+
1080 void CodegenCppVisitor::visit_mutex_lock(const ast::MutexLock& node) {
+
1081  printer->fmt_line("#pragma omp critical ({})", info.mod_suffix);
+
1082  printer->add_indent();
+
1083  printer->push_block();
+
1084 }
+
1085 
+
1086 
+
1087 void CodegenCppVisitor::visit_mutex_unlock(const ast::MutexUnlock& node) {
+
1088  printer->pop_block();
+
1089 }
+
1090 
1091 
-
1092 
-
1093 void CodegenCppVisitor::visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock& node) {
-
1094  // solution vector to store copy of state vars for Newton solver
-
1095  printer->add_newline();
-
1096 
-
1097  auto float_type = default_float_data_type();
-
1098  int N = node.get_n_state_vars()->get_value();
-
1099  printer->fmt_line("Eigen::Matrix<{}, {}, 1> nmodl_eigen_xm;", float_type, N);
-
1100  printer->fmt_line("{}* nmodl_eigen_x = nmodl_eigen_xm.data();", float_type);
+
1092 void CodegenCppVisitor::visit_solution_expression(const SolutionExpression& node) {
+
1093  auto block = node.get_node_to_solve().get();
+
1094  if (block->is_statement_block()) {
+
1095  auto statement_block = dynamic_cast<ast::StatementBlock*>(block);
+
1096  print_statement_block(*statement_block, false, false);
+
1097  } else {
+
1098  block->accept(*this);
+
1099  }
+
1100 }
1101 
-
1102  print_statement_block(*node.get_setup_x_block(), false, false);
-
1103 
-
1104  // call newton solver with functor and X matrix that contains state vars
-
1105  printer->add_line("// call newton solver");
-
1106  printer->fmt_line("{} newton_functor({});",
-
1107  info.functor_names[&node],
-
1108  get_arg_str(functor_params()));
-
1109  printer->add_line("newton_functor.initialize();");
-
1110  printer->add_line(
-
1111  "int newton_iterations = nmodl::newton::newton_solver(nmodl_eigen_xm, newton_functor);");
-
1112  printer->add_line(
-
1113  "if (newton_iterations < 0) assert(false && \"Newton solver did not converge!\");");
-
1114 
-
1115  // assign newton solver results in matrix X to state vars
-
1116  print_statement_block(*node.get_update_states_block(), false, false);
-
1117  printer->add_line("newton_functor.initialize(); // TODO mimic calling F again.");
-
1118  printer->add_line("newton_functor.finalize();");
-
1119 }
-
1120 
-
1121 
-
1122 void CodegenCppVisitor::visit_eigen_linear_solver_block(const ast::EigenLinearSolverBlock& node) {
-
1123  printer->add_newline();
+
1102 
+
1103 void CodegenCppVisitor::visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock& node) {
+
1104  // solution vector to store copy of state vars for Newton solver
+
1105  printer->add_newline();
+
1106 
+
1107  auto float_type = default_float_data_type();
+
1108  int N = node.get_n_state_vars()->get_value();
+
1109  printer->fmt_line("Eigen::Matrix<{}, {}, 1> nmodl_eigen_xm;", float_type, N);
+
1110  printer->fmt_line("{}* nmodl_eigen_x = nmodl_eigen_xm.data();", float_type);
+
1111 
+
1112  print_statement_block(*node.get_setup_x_block(), false, false);
+
1113 
+
1114  // call newton solver with functor and X matrix that contains state vars
+
1115  printer->add_line("// call newton solver");
+
1116  printer->fmt_line("{} newton_functor({});",
+
1117  info.functor_names[&node],
+
1118  get_arg_str(functor_params()));
+
1119  printer->add_line("newton_functor.initialize();");
+
1120  printer->add_line(
+
1121  "int newton_iterations = nmodl::newton::newton_solver(nmodl_eigen_xm, newton_functor);");
+
1122  printer->add_line(
+
1123  "if (newton_iterations < 0) assert(false && \"Newton solver did not converge!\");");
1124 
-
1125  const std::string float_type = default_float_data_type();
-
1126  int N = node.get_n_state_vars()->get_value();
-
1127  printer->fmt_line("Eigen::Matrix<{0}, {1}, 1> nmodl_eigen_xm, nmodl_eigen_fm;", float_type, N);
-
1128  printer->fmt_line("Eigen::Matrix<{0}, {1}, {1}> nmodl_eigen_jm;", float_type, N);
-
1129  if (N <= 4) {
-
1130  printer->fmt_line("Eigen::Matrix<{0}, {1}, {1}> nmodl_eigen_jm_inv;", float_type, N);
-
1131  }
-
1132  printer->fmt_line("{}* nmodl_eigen_x = nmodl_eigen_xm.data();", float_type);
-
1133  printer->fmt_line("{}* nmodl_eigen_j = nmodl_eigen_jm.data();", float_type);
-
1134  printer->fmt_line("{}* nmodl_eigen_f = nmodl_eigen_fm.data();", float_type);
-
1135  print_statement_block(*node.get_variable_block(), false, false);
-
1136  print_statement_block(*node.get_initialize_block(), false, false);
-
1137  print_statement_block(*node.get_setup_x_block(), false, false);
-
1138 
-
1139  printer->add_newline();
-
1140  print_eigen_linear_solver(float_type, N);
-
1141  printer->add_newline();
-
1142 
-
1143  print_statement_block(*node.get_update_states_block(), false, false);
-
1144  print_statement_block(*node.get_finalize_block(), false, false);
-
1145 }
-
1146 
-
1147 
-
1148 /**
-
1149  * \details Once variables are populated, update index semantics to register with coreneuron
-
1150  */
-
1151 // NOLINTNEXTLINE(readability-function-cognitive-complexity)
-
1152 void CodegenCppVisitor::update_index_semantics() {
-
1153  int index = 0;
-
1154  info.semantics.clear();
-
1155 
-
1156  if (info.point_process) {
-
1157  info.semantics.emplace_back(index++, naming::AREA_SEMANTIC, 1);
-
1158  info.semantics.emplace_back(index++, naming::POINT_PROCESS_SEMANTIC, 1);
-
1159  }
-
1160  for (const auto& ion: info.ions) {
-
1161  for (auto i = 0; i < ion.reads.size(); ++i) {
-
1162  info.semantics.emplace_back(index++, ion.name + "_ion", 1);
-
1163  }
-
1164  for (const auto& var: ion.writes) {
-
1165  /// add if variable is not present in the read list
-
1166  if (std::find(ion.reads.begin(), ion.reads.end(), var) == ion.reads.end()) {
-
1167  info.semantics.emplace_back(index++, ion.name + "_ion", 1);
-
1168  }
-
1169  if (ion.is_ionic_current(var)) {
-
1170  info.semantics.emplace_back(index++, ion.name + "_ion", 1);
-
1171  }
-
1172  }
-
1173  if (ion.need_style) {
-
1174  info.semantics.emplace_back(index++, fmt::format("{}_ion", ion.name), 1);
-
1175  info.semantics.emplace_back(index++, fmt::format("#{}_ion", ion.name), 1);
-
1176  }
-
1177  }
-
1178  for (auto& var: info.pointer_variables) {
-
1179  if (info.first_pointer_var_index == -1) {
-
1180  info.first_pointer_var_index = index;
-
1181  }
-
1182  int size = var->get_length();
-
1183  if (var->has_any_property(NmodlType::pointer_var)) {
-
1184  info.semantics.emplace_back(index, naming::POINTER_SEMANTIC, size);
-
1185  } else {
-
1186  info.semantics.emplace_back(index, naming::CORE_POINTER_SEMANTIC, size);
-
1187  }
-
1188  index += size;
-
1189  }
-
1190 
-
1191  for (auto& var: info.random_variables) {
-
1192  if (info.first_random_var_index == -1) {
-
1193  info.first_random_var_index = index;
-
1194  }
-
1195  int size = var->get_length();
-
1196  info.semantics.emplace_back(index, naming::RANDOM_SEMANTIC, size);
-
1197  index += size;
-
1198  }
-
1199 
-
1200  if (info.diam_used) {
-
1201  info.semantics.emplace_back(index++, naming::DIAM_VARIABLE, 1);
-
1202  }
-
1203 
-
1204  if (info.area_used) {
-
1205  info.semantics.emplace_back(index++, naming::AREA_VARIABLE, 1);
-
1206  }
-
1207 
-
1208  if (info.net_send_used) {
-
1209  info.semantics.emplace_back(index++, naming::NET_SEND_SEMANTIC, 1);
-
1210  }
-
1211 
-
1212  /*
-
1213  * Number of semantics for watch is one greater than number of
-
1214  * actual watch statements in the mod file
-
1215  */
-
1216  if (!info.watch_statements.empty()) {
-
1217  for (int i = 0; i < info.watch_statements.size() + 1; i++) {
-
1218  info.semantics.emplace_back(index++, naming::WATCH_SEMANTIC, 1);
-
1219  }
+
1125  // assign newton solver results in matrix X to state vars
+
1126  print_statement_block(*node.get_update_states_block(), false, false);
+
1127  printer->add_line("newton_functor.initialize(); // TODO mimic calling F again.");
+
1128  printer->add_line("newton_functor.finalize();");
+
1129 }
+
1130 
+
1131 
+
1132 void CodegenCppVisitor::visit_eigen_linear_solver_block(const ast::EigenLinearSolverBlock& node) {
+
1133  printer->add_newline();
+
1134 
+
1135  const std::string float_type = default_float_data_type();
+
1136  int N = node.get_n_state_vars()->get_value();
+
1137  printer->fmt_line("Eigen::Matrix<{0}, {1}, 1> nmodl_eigen_xm, nmodl_eigen_fm;", float_type, N);
+
1138  printer->fmt_line("Eigen::Matrix<{0}, {1}, {1}> nmodl_eigen_jm;", float_type, N);
+
1139  if (N <= 4) {
+
1140  printer->fmt_line("Eigen::Matrix<{0}, {1}, {1}> nmodl_eigen_jm_inv;", float_type, N);
+
1141  }
+
1142  printer->fmt_line("{}* nmodl_eigen_x = nmodl_eigen_xm.data();", float_type);
+
1143  printer->fmt_line("{}* nmodl_eigen_j = nmodl_eigen_jm.data();", float_type);
+
1144  printer->fmt_line("{}* nmodl_eigen_f = nmodl_eigen_fm.data();", float_type);
+
1145  print_statement_block(*node.get_variable_block(), false, false);
+
1146  print_statement_block(*node.get_initialize_block(), false, false);
+
1147  print_statement_block(*node.get_setup_x_block(), false, false);
+
1148 
+
1149  printer->add_newline();
+
1150  print_eigen_linear_solver(float_type, N);
+
1151  printer->add_newline();
+
1152 
+
1153  print_statement_block(*node.get_update_states_block(), false, false);
+
1154  print_statement_block(*node.get_finalize_block(), false, false);
+
1155 }
+
1156 
+
1157 
+
1158 /**
+
1159  * \details Once variables are populated, update index semantics to register with coreneuron
+
1160  */
+
1161 // NOLINTNEXTLINE(readability-function-cognitive-complexity)
+
1162 void CodegenCppVisitor::update_index_semantics() {
+
1163  int index = 0;
+
1164  info.semantics.clear();
+
1165 
+
1166  if (info.point_process) {
+
1167  info.semantics.emplace_back(index++, naming::AREA_SEMANTIC, 1);
+
1168  info.semantics.emplace_back(index++, naming::POINT_PROCESS_SEMANTIC, 1);
+
1169  }
+
1170  for (const auto& ion: info.ions) {
+
1171  for (auto i = 0; i < ion.reads.size(); ++i) {
+
1172  info.semantics.emplace_back(index++, ion.name + "_ion", 1);
+
1173  }
+
1174  for (const auto& var: ion.writes) {
+
1175  /// add if variable is not present in the read list
+
1176  if (std::find(ion.reads.begin(), ion.reads.end(), var) == ion.reads.end()) {
+
1177  info.semantics.emplace_back(index++, ion.name + "_ion", 1);
+
1178  }
+
1179  if (ion.is_ionic_current(var)) {
+
1180  info.semantics.emplace_back(index++, ion.name + "_ion", 1);
+
1181  }
+
1182  }
+
1183  if (ion.need_style) {
+
1184  info.semantics.emplace_back(index++, fmt::format("{}_ion", ion.name), 1);
+
1185  info.semantics.emplace_back(index++, fmt::format("#{}_ion", ion.name), 1);
+
1186  }
+
1187  }
+
1188  for (auto& var: info.pointer_variables) {
+
1189  if (info.first_pointer_var_index == -1) {
+
1190  info.first_pointer_var_index = index;
+
1191  }
+
1192  int size = var->get_length();
+
1193  if (var->has_any_property(NmodlType::pointer_var)) {
+
1194  info.semantics.emplace_back(index, naming::POINTER_SEMANTIC, size);
+
1195  } else {
+
1196  info.semantics.emplace_back(index, naming::CORE_POINTER_SEMANTIC, size);
+
1197  }
+
1198  index += size;
+
1199  }
+
1200 
+
1201  for (auto& var: info.random_variables) {
+
1202  if (info.first_random_var_index == -1) {
+
1203  info.first_random_var_index = index;
+
1204  }
+
1205  int size = var->get_length();
+
1206  info.semantics.emplace_back(index, naming::RANDOM_SEMANTIC, size);
+
1207  index += size;
+
1208  }
+
1209 
+
1210  if (info.diam_used) {
+
1211  info.semantics.emplace_back(index++, naming::DIAM_VARIABLE, 1);
+
1212  }
+
1213 
+
1214  if (info.area_used) {
+
1215  info.semantics.emplace_back(index++, naming::AREA_VARIABLE, 1);
+
1216  }
+
1217 
+
1218  if (info.net_send_used) {
+
1219  info.semantics.emplace_back(index++, naming::NET_SEND_SEMANTIC, 1);
1220  }
1221 
-
1222  if (info.for_netcon_used) {
-
1223  info.semantics.emplace_back(index++, naming::FOR_NETCON_SEMANTIC, 1);
-
1224  }
-
1225 }
-
1226 
-
1227 
-
1228 std::vector<CodegenCppVisitor::SymbolType> CodegenCppVisitor::get_float_variables() const {
-
1229  // sort with definition order
-
1230  auto comparator = [](const SymbolType& first, const SymbolType& second) -> bool {
-
1231  return first->get_definition_order() < second->get_definition_order();
-
1232  };
-
1233 
-
1234  auto assigned = info.assigned_vars;
-
1235  auto states = info.state_vars;
+
1222  /*
+
1223  * Number of semantics for watch is one greater than number of
+
1224  * actual watch statements in the mod file
+
1225  */
+
1226  if (!info.watch_statements.empty()) {
+
1227  for (int i = 0; i < info.watch_statements.size() + 1; i++) {
+
1228  info.semantics.emplace_back(index++, naming::WATCH_SEMANTIC, 1);
+
1229  }
+
1230  }
+
1231 
+
1232  if (info.for_netcon_used) {
+
1233  info.semantics.emplace_back(index++, naming::FOR_NETCON_SEMANTIC, 1);
+
1234  }
+
1235 }
1236 
-
1237  // each state variable has corresponding Dstate variable
-
1238  for (const auto& state: states) {
-
1239  auto name = "D" + state->get_name();
-
1240  auto symbol = make_symbol(name);
-
1241  if (state->is_array()) {
-
1242  symbol->set_as_array(state->get_length());
-
1243  }
-
1244  symbol->set_definition_order(state->get_definition_order());
-
1245  assigned.push_back(symbol);
-
1246  }
-
1247  std::sort(assigned.begin(), assigned.end(), comparator);
-
1248 
-
1249  auto variables = info.range_parameter_vars;
-
1250  variables.insert(variables.end(),
-
1251  info.range_assigned_vars.begin(),
-
1252  info.range_assigned_vars.end());
-
1253  variables.insert(variables.end(), info.range_state_vars.begin(), info.range_state_vars.end());
-
1254 
-
1255  for (const auto& v: assigned) {
-
1256  auto it = std::find_if(info.external_variables.begin(),
-
1257  info.external_variables.end(),
-
1258  [&v](auto it) { return it->get_name() == get_name(v); });
-
1259 
-
1260  if (it == info.external_variables.end()) {
-
1261  variables.push_back(v);
-
1262  }
-
1263  }
+
1237 
+
1238 std::vector<CodegenCppVisitor::SymbolType> CodegenCppVisitor::get_float_variables() const {
+
1239  // sort with definition order
+
1240  auto comparator = [](const SymbolType& first, const SymbolType& second) -> bool {
+
1241  return first->get_definition_order() < second->get_definition_order();
+
1242  };
+
1243 
+
1244  auto assigned = info.assigned_vars;
+
1245  auto states = info.state_vars;
+
1246 
+
1247  // each state variable has corresponding Dstate variable
+
1248  for (const auto& state: states) {
+
1249  auto name = "D" + state->get_name();
+
1250  auto symbol = make_symbol(name);
+
1251  if (state->is_array()) {
+
1252  symbol->set_as_array(state->get_length());
+
1253  }
+
1254  symbol->set_definition_order(state->get_definition_order());
+
1255  assigned.push_back(symbol);
+
1256  }
+
1257  std::sort(assigned.begin(), assigned.end(), comparator);
+
1258 
+
1259  auto variables = info.range_parameter_vars;
+
1260  variables.insert(variables.end(),
+
1261  info.range_assigned_vars.begin(),
+
1262  info.range_assigned_vars.end());
+
1263  variables.insert(variables.end(), info.range_state_vars.begin(), info.range_state_vars.end());
1264 
-
1265  if (info.vectorize) {
-
1266  variables.push_back(make_symbol(naming::VOLTAGE_UNUSED_VARIABLE));
-
1267  }
-
1268 
-
1269  if (breakpoint_exist()) {
-
1270  std::string name = info.vectorize ? naming::CONDUCTANCE_UNUSED_VARIABLE
-
1271  : naming::CONDUCTANCE_VARIABLE;
-
1272 
-
1273  // make sure conductance variable like `g` is not already defined
-
1274  if (auto r = std::find_if(variables.cbegin(),
-
1275  variables.cend(),
-
1276  [&](const auto& s) { return name == s->get_name(); });
-
1277  r == variables.cend()) {
-
1278  variables.push_back(make_symbol(name));
-
1279  }
-
1280  }
-
1281 
-
1282  if (net_receive_exist()) {
-
1283  variables.push_back(make_symbol(naming::T_SAVE_VARIABLE));
-
1284  }
-
1285 
-
1286  return variables;
-
1287 }
-
1288 
-
1289 
-
1290 /**
-
1291  * IndexVariableInfo has following constructor arguments:
-
1292  * - symbol
-
1293  * - is_vdata (false)
-
1294  * - is_index (false
-
1295  * - is_integer (false)
-
1296  *
-
1297  * Which variables are constant qualified?
-
1298  *
-
1299  * - node area is read only
-
1300  * - read ion variables are read only
-
1301  * - style_ionname is index / offset
-
1302  */
-
1303 // NOLINTNEXTLINE(readability-function-cognitive-complexity)
-
1304 std::vector<IndexVariableInfo> CodegenCppVisitor::get_int_variables() {
-
1305  std::vector<IndexVariableInfo> variables;
-
1306  if (info.point_process) {
-
1307  variables.emplace_back(make_symbol(naming::NODE_AREA_VARIABLE));
-
1308  variables.back().is_constant = true;
-
1309 
-
1310  add_variable_point_process(variables);
-
1311  }
-
1312 
-
1313  for (auto& ion: info.ions) {
-
1314  bool need_style = false;
-
1315  std::unordered_map<std::string, int> ion_vars; // used to keep track of the variables to
-
1316  // not have doubles between read/write. Same
-
1317  // name variables are allowed
-
1318  // See if we need to add extra readion statements to match NEURON with SoA data
-
1319  auto const has_var = [&ion](const char* suffix) -> bool {
-
1320  auto const pred = [name = ion.name + suffix](auto const& x) { return x == name; };
-
1321  return std::any_of(ion.reads.begin(), ion.reads.end(), pred) ||
-
1322  std::any_of(ion.writes.begin(), ion.writes.end(), pred);
-
1323  };
-
1324  auto const add_implicit_read = [&ion](const char* suffix) {
-
1325  auto name = ion.name + suffix;
-
1326  ion.reads.push_back(name);
-
1327  ion.implicit_reads.push_back(std::move(name));
-
1328  };
-
1329  bool const have_ionin{has_var("i")}, have_ionout{has_var("o")};
-
1330  if (have_ionin && !have_ionout) {
-
1331  add_implicit_read("o");
-
1332  } else if (have_ionout && !have_ionin) {
-
1333  add_implicit_read("i");
-
1334  }
-
1335  for (const auto& var: ion.reads) {
-
1336  const std::string name = naming::ION_VARNAME_PREFIX + var;
-
1337  variables.emplace_back(make_symbol(name));
-
1338  variables.back().is_constant = true;
-
1339  ion_vars[name] = static_cast<int>(variables.size() - 1);
-
1340  }
-
1341 
-
1342  /// symbol for di_ion_dv var
-
1343  std::shared_ptr<symtab::Symbol> ion_di_dv_var = nullptr;
-
1344 
-
1345  for (const auto& var: ion.writes) {
+
1265  for (const auto& v: assigned) {
+
1266  auto it = std::find_if(info.external_variables.begin(),
+
1267  info.external_variables.end(),
+
1268  [&v](auto it) { return it->get_name() == get_name(v); });
+
1269 
+
1270  if (it == info.external_variables.end()) {
+
1271  variables.push_back(v);
+
1272  }
+
1273  }
+
1274 
+
1275  if (info.vectorize) {
+
1276  variables.push_back(make_symbol(naming::VOLTAGE_UNUSED_VARIABLE));
+
1277  }
+
1278 
+
1279  if (breakpoint_exist()) {
+
1280  std::string name = info.vectorize ? naming::CONDUCTANCE_UNUSED_VARIABLE
+
1281  : naming::CONDUCTANCE_VARIABLE;
+
1282 
+
1283  // make sure conductance variable like `g` is not already defined
+
1284  if (auto r = std::find_if(variables.cbegin(),
+
1285  variables.cend(),
+
1286  [&](const auto& s) { return name == s->get_name(); });
+
1287  r == variables.cend()) {
+
1288  variables.push_back(make_symbol(name));
+
1289  }
+
1290  }
+
1291 
+
1292  if (net_receive_exist()) {
+
1293  variables.push_back(make_symbol(naming::T_SAVE_VARIABLE));
+
1294  }
+
1295 
+
1296  return variables;
+
1297 }
+
1298 
+
1299 
+
1300 /**
+
1301  * IndexVariableInfo has following constructor arguments:
+
1302  * - symbol
+
1303  * - is_vdata (false)
+
1304  * - is_index (false
+
1305  * - is_integer (false)
+
1306  *
+
1307  * Which variables are constant qualified?
+
1308  *
+
1309  * - node area is read only
+
1310  * - read ion variables are read only
+
1311  * - style_ionname is index / offset
+
1312  */
+
1313 // NOLINTNEXTLINE(readability-function-cognitive-complexity)
+
1314 std::vector<IndexVariableInfo> CodegenCppVisitor::get_int_variables() {
+
1315  std::vector<IndexVariableInfo> variables;
+
1316  if (info.point_process) {
+
1317  variables.emplace_back(make_symbol(naming::NODE_AREA_VARIABLE));
+
1318  variables.back().is_constant = true;
+
1319 
+
1320  add_variable_point_process(variables);
+
1321  }
+
1322 
+
1323  for (auto& ion: info.ions) {
+
1324  bool need_style = false;
+
1325  std::unordered_map<std::string, int> ion_vars; // used to keep track of the variables to
+
1326  // not have doubles between read/write. Same
+
1327  // name variables are allowed
+
1328  // See if we need to add extra readion statements to match NEURON with SoA data
+
1329  auto const has_var = [&ion](const char* suffix) -> bool {
+
1330  auto const pred = [name = ion.name + suffix](auto const& x) { return x == name; };
+
1331  return std::any_of(ion.reads.begin(), ion.reads.end(), pred) ||
+
1332  std::any_of(ion.writes.begin(), ion.writes.end(), pred);
+
1333  };
+
1334  auto const add_implicit_read = [&ion](const char* suffix) {
+
1335  auto name = ion.name + suffix;
+
1336  ion.reads.push_back(name);
+
1337  ion.implicit_reads.push_back(std::move(name));
+
1338  };
+
1339  bool const have_ionin{has_var("i")}, have_ionout{has_var("o")};
+
1340  if (have_ionin && !have_ionout) {
+
1341  add_implicit_read("o");
+
1342  } else if (have_ionout && !have_ionin) {
+
1343  add_implicit_read("i");
+
1344  }
+
1345  for (const auto& var: ion.reads) {
1346  const std::string name = naming::ION_VARNAME_PREFIX + var;
-
1347 
-
1348  const auto ion_vars_it = ion_vars.find(name);
-
1349  if (ion_vars_it != ion_vars.end()) {
-
1350  variables[ion_vars_it->second].is_constant = false;
-
1351  } else {
-
1352  variables.emplace_back(make_symbol(naming::ION_VARNAME_PREFIX + var));
-
1353  }
-
1354  if (ion.is_ionic_current(var)) {
-
1355  ion_di_dv_var = make_symbol(std::string(naming::ION_VARNAME_PREFIX) + "di" +
-
1356  ion.name + "dv");
-
1357  }
-
1358  if (ion.is_intra_cell_conc(var) || ion.is_extra_cell_conc(var)) {
-
1359  need_style = true;
-
1360  }
-
1361  }
-
1362 
-
1363  /// insert after read/write variables but before style ion variable
-
1364  if (ion_di_dv_var != nullptr) {
-
1365  variables.emplace_back(ion_di_dv_var);
-
1366  }
-
1367 
-
1368  if (need_style) {
-
1369  variables.emplace_back(make_symbol(naming::ION_VARNAME_PREFIX + ion.name + "_erev"));
-
1370  variables.emplace_back(make_symbol("style_" + ion.name), false, true);
-
1371  variables.back().is_constant = true;
-
1372  }
-
1373  }
-
1374 
-
1375  for (const auto& var: info.pointer_variables) {
-
1376  auto name = var->get_name();
-
1377  if (var->has_any_property(NmodlType::pointer_var)) {
-
1378  variables.emplace_back(make_symbol(name));
-
1379  } else {
-
1380  variables.emplace_back(make_symbol(name), true);
-
1381  }
-
1382  }
-
1383 
-
1384  for (const auto& var: info.random_variables) {
-
1385  auto name = var->get_name();
-
1386  variables.emplace_back(make_symbol(name), true);
-
1387  variables.back().symbol->add_properties(NmodlType::random_var);
-
1388  }
-
1389 
-
1390  if (info.diam_used) {
-
1391  variables.emplace_back(make_symbol(naming::DIAM_VARIABLE));
+
1347  variables.emplace_back(make_symbol(name));
+
1348  variables.back().is_constant = true;
+
1349  ion_vars[name] = static_cast<int>(variables.size() - 1);
+
1350  }
+
1351 
+
1352  /// symbol for di_ion_dv var
+
1353  std::shared_ptr<symtab::Symbol> ion_di_dv_var = nullptr;
+
1354 
+
1355  for (const auto& var: ion.writes) {
+
1356  const std::string name = naming::ION_VARNAME_PREFIX + var;
+
1357 
+
1358  const auto ion_vars_it = ion_vars.find(name);
+
1359  if (ion_vars_it != ion_vars.end()) {
+
1360  variables[ion_vars_it->second].is_constant = false;
+
1361  } else {
+
1362  variables.emplace_back(make_symbol(naming::ION_VARNAME_PREFIX + var));
+
1363  }
+
1364  if (ion.is_ionic_current(var)) {
+
1365  ion_di_dv_var = make_symbol(std::string(naming::ION_VARNAME_PREFIX) + "di" +
+
1366  ion.name + "dv");
+
1367  }
+
1368  if (ion.is_intra_cell_conc(var) || ion.is_extra_cell_conc(var)) {
+
1369  need_style = true;
+
1370  }
+
1371  }
+
1372 
+
1373  /// insert after read/write variables but before style ion variable
+
1374  if (ion_di_dv_var != nullptr) {
+
1375  variables.emplace_back(ion_di_dv_var);
+
1376  }
+
1377 
+
1378  if (need_style) {
+
1379  variables.emplace_back(make_symbol(naming::ION_VARNAME_PREFIX + ion.name + "_erev"));
+
1380  variables.emplace_back(make_symbol("style_" + ion.name), false, true);
+
1381  variables.back().is_constant = true;
+
1382  }
+
1383  }
+
1384 
+
1385  for (const auto& var: info.pointer_variables) {
+
1386  auto name = var->get_name();
+
1387  if (var->has_any_property(NmodlType::pointer_var)) {
+
1388  variables.emplace_back(make_symbol(name));
+
1389  } else {
+
1390  variables.emplace_back(make_symbol(name), true);
+
1391  }
1392  }
1393 
-
1394  if (info.area_used) {
-
1395  variables.emplace_back(make_symbol(naming::AREA_VARIABLE));
-
1396  }
-
1397 
-
1398  add_variable_tqitem(variables);
-
1399 
-
1400  /**
-
1401  * \note Variables for watch statements : there is one extra variable
-
1402  * used in coreneuron compared to actual watch statements for compatibility
-
1403  * with neuron (which uses one extra Datum variable)
-
1404  */
-
1405  if (!info.watch_statements.empty()) {
-
1406  for (int i = 0; i < info.watch_statements.size() + 1; i++) {
-
1407  variables.emplace_back(make_symbol(fmt::format("watch{}", i)), false, false, true);
-
1408  }
-
1409  }
-
1410 
-
1411  if (info.for_netcon_used) {
-
1412  variables.emplace_back(make_symbol(naming::FOR_NETCON_VARIABLE), false, false, true);
-
1413  }
-
1414  return variables;
-
1415 }
-
1416 
-
1417 
-
1418 void CodegenCppVisitor::setup(const Program& node) {
-
1419  program_symtab = node.get_symbol_table();
+
1394  for (const auto& var: info.random_variables) {
+
1395  auto name = var->get_name();
+
1396  variables.emplace_back(make_symbol(name), true);
+
1397  variables.back().symbol->add_properties(NmodlType::random_var);
+
1398  }
+
1399 
+
1400  if (info.diam_used) {
+
1401  variables.emplace_back(make_symbol(naming::DIAM_VARIABLE));
+
1402  }
+
1403 
+
1404  if (info.area_used) {
+
1405  variables.emplace_back(make_symbol(naming::AREA_VARIABLE));
+
1406  }
+
1407 
+
1408  add_variable_tqitem(variables);
+
1409 
+
1410  /**
+
1411  * \note Variables for watch statements : there is one extra variable
+
1412  * used in coreneuron compared to actual watch statements for compatibility
+
1413  * with neuron (which uses one extra Datum variable)
+
1414  */
+
1415  if (!info.watch_statements.empty()) {
+
1416  for (int i = 0; i < info.watch_statements.size() + 1; i++) {
+
1417  variables.emplace_back(make_symbol(fmt::format("watch{}", i)), false, false, true);
+
1418  }
+
1419  }
1420 
-
1421  CodegenHelperVisitor v;
-
1422  info = v.analyze(node);
-
1423  info.mod_file = mod_filename;
-
1424 
-
1425  if (info.mod_suffix == "") {
-
1426  info.mod_suffix = std::filesystem::path(mod_filename).stem().string();
-
1427  }
-
1428  info.rsuffix = info.point_process ? "" : "_" + info.mod_suffix;
-
1429 
-
1430  if (!info.vectorize) {
-
1431  logger->warn(
-
1432  "CodegenCoreneuronCppVisitor : MOD file uses non-thread safe constructs of NMODL");
-
1433  }
+
1421  if (info.for_netcon_used) {
+
1422  variables.emplace_back(make_symbol(naming::FOR_NETCON_VARIABLE), false, false, true);
+
1423  }
+
1424  return variables;
+
1425 }
+
1426 
+
1427 
+
1428 void CodegenCppVisitor::setup(const Program& node) {
+
1429  program_symtab = node.get_symbol_table();
+
1430 
+
1431  CodegenHelperVisitor v;
+
1432  info = v.analyze(node);
+
1433  info.mod_file = mod_filename;
1434 
-
1435  codegen_float_variables = get_float_variables();
-
1436  codegen_int_variables = get_int_variables();
-
1437 
-
1438  update_index_semantics();
+
1435  if (info.mod_suffix == "") {
+
1436  info.mod_suffix = std::filesystem::path(mod_filename).stem().string();
+
1437  }
+
1438  info.rsuffix = info.point_process ? "" : "_" + info.mod_suffix;
1439 
-
1440  info.semantic_variable_count = int_variables_size();
-
1441 }
-
1442 
-
1443 std::string CodegenCppVisitor::compute_method_name(BlockType type) const {
-
1444  if (type == BlockType::Initial) {
-
1445  return method_name(naming::NRN_INIT_METHOD);
-
1446  }
-
1447  if (type == BlockType::Constructor) {
-
1448  return method_name(naming::NRN_CONSTRUCTOR_METHOD);
-
1449  }
-
1450  if (type == BlockType::Destructor) {
-
1451  return method_name(naming::NRN_DESTRUCTOR_METHOD);
-
1452  }
-
1453  if (type == BlockType::State) {
-
1454  return method_name(naming::NRN_STATE_METHOD);
-
1455  }
-
1456  if (type == BlockType::Equation) {
-
1457  return method_name(naming::NRN_CUR_METHOD);
-
1458  }
-
1459  if (type == BlockType::Watch) {
-
1460  return method_name(naming::NRN_WATCH_CHECK_METHOD);
-
1461  }
-
1462  throw std::logic_error("compute_method_name not implemented");
-
1463 }
-
1464 
-
1465 
-
1466 void CodegenCppVisitor::visit_program(const Program& node) {
-
1467  setup(node);
-
1468  print_codegen_routines();
-
1469 }
-
1470 
-
1471 
-
1472 void CodegenCppVisitor::print_table_replacement_function(const ast::Block& node) {
-
1473  auto name = node.get_node_name();
-
1474  auto statement = get_table_statement(node);
-
1475  auto table_variables = statement->get_table_vars();
-
1476  auto with = statement->get_with()->eval();
-
1477  auto use_table_var = get_variable_name(naming::USE_TABLE_VARIABLE);
-
1478  auto tmin_name = get_variable_name("tmin_" + name);
-
1479  auto mfac_name = get_variable_name("mfac_" + name);
-
1480  auto function_name = method_name("f_" + name);
+
1440  if (!info.vectorize) {
+
1441  logger->warn(
+
1442  "CodegenCoreneuronCppVisitor : MOD file uses non-thread safe constructs of NMODL");
+
1443  }
+
1444 
+
1445  codegen_float_variables = get_float_variables();
+
1446  codegen_int_variables = get_int_variables();
+
1447 
+
1448  update_index_semantics();
+
1449 
+
1450  info.semantic_variable_count = int_variables_size();
+
1451 }
+
1452 
+
1453 std::string CodegenCppVisitor::compute_method_name(BlockType type) const {
+
1454  if (type == BlockType::Initial) {
+
1455  return method_name(naming::NRN_INIT_METHOD);
+
1456  }
+
1457  if (type == BlockType::Constructor) {
+
1458  return method_name(naming::NRN_CONSTRUCTOR_METHOD);
+
1459  }
+
1460  if (type == BlockType::Destructor) {
+
1461  return method_name(naming::NRN_DESTRUCTOR_METHOD);
+
1462  }
+
1463  if (type == BlockType::State) {
+
1464  return method_name(naming::NRN_STATE_METHOD);
+
1465  }
+
1466  if (type == BlockType::Equation) {
+
1467  return method_name(naming::NRN_CUR_METHOD);
+
1468  }
+
1469  if (type == BlockType::Watch) {
+
1470  return method_name(naming::NRN_WATCH_CHECK_METHOD);
+
1471  }
+
1472  throw std::logic_error("compute_method_name not implemented");
+
1473 }
+
1474 
+
1475 
+
1476 void CodegenCppVisitor::visit_program(const Program& node) {
+
1477  setup(node);
+
1478  print_codegen_routines();
+
1479 }
+
1480 
1481 
-
1482  printer->add_newline(2);
-
1483  print_function_declaration(node, name);
-
1484  printer->push_block();
-
1485  {
-
1486  const auto& params = node.get_parameters();
-
1487  printer->fmt_push_block("if ({} == 0)", use_table_var);
-
1488  if (node.is_procedure_block()) {
-
1489  printer->fmt_line("{}({}, {});",
-
1490  function_name,
-
1491  internal_method_arguments(),
-
1492  params[0].get()->get_node_name());
-
1493  printer->add_line("return 0;");
-
1494  } else {
-
1495  printer->fmt_line("return {}({}, {});",
-
1496  function_name,
-
1497  internal_method_arguments(),
-
1498  params[0].get()->get_node_name());
-
1499  }
-
1500  printer->pop_block();
-
1501 
-
1502  printer->fmt_line("double xi = {} * ({} - {});",
-
1503  mfac_name,
-
1504  params[0].get()->get_node_name(),
-
1505  tmin_name);
-
1506  printer->push_block("if (isnan(xi))");
-
1507  if (node.is_procedure_block()) {
-
1508  for (const auto& var: table_variables) {
-
1509  auto var_name = get_variable_name(var->get_node_name());
-
1510  auto [is_array, array_length] = check_if_var_is_array(var->get_node_name());
-
1511  if (is_array) {
-
1512  for (int j = 0; j < array_length; j++) {
-
1513  printer->fmt_line("{}[{}] = xi;", var_name, j);
-
1514  }
-
1515  } else {
-
1516  printer->fmt_line("{} = xi;", var_name);
-
1517  }
-
1518  }
-
1519  printer->add_line("return 0;");
-
1520  } else {
-
1521  printer->add_line("return xi;");
-
1522  }
-
1523  printer->pop_block();
-
1524 
-
1525  printer->fmt_push_block("if (xi <= 0. || xi >= {}.)", with);
-
1526  printer->fmt_line("int index = (xi <= 0.) ? 0 : {};", with);
-
1527  if (node.is_procedure_block()) {
-
1528  for (const auto& variable: table_variables) {
-
1529  auto var_name = variable->get_node_name();
-
1530  auto instance_name = get_variable_name(var_name);
-
1531  auto table_name = get_variable_name("t_" + var_name);
-
1532  auto [is_array, array_length] = check_if_var_is_array(var_name);
-
1533  if (is_array) {
-
1534  for (int j = 0; j < array_length; j++) {
-
1535  printer->fmt_line(
-
1536  "{}[{}] = {}[{}][index];", instance_name, j, table_name, j);
-
1537  }
-
1538  } else {
-
1539  printer->fmt_line("{} = {}[index];", instance_name, table_name);
-
1540  }
-
1541  }
-
1542  printer->add_line("return 0;");
-
1543  } else {
-
1544  auto table_name = get_variable_name("t_" + name);
-
1545  printer->fmt_line("return {}[index];", table_name);
-
1546  }
-
1547  printer->pop_block();
-
1548 
-
1549  printer->add_line("int i = int(xi);");
-
1550  printer->add_line("double theta = xi - double(i);");
-
1551  if (node.is_procedure_block()) {
-
1552  for (const auto& var: table_variables) {
-
1553  auto var_name = var->get_node_name();
-
1554  auto instance_name = get_variable_name(var_name);
-
1555  auto table_name = get_variable_name("t_" + var_name);
-
1556  auto [is_array, array_length] = check_if_var_is_array(var->get_node_name());
-
1557  if (is_array) {
-
1558  for (size_t j = 0; j < array_length; j++) {
-
1559  printer->fmt_line(
-
1560  "{0}[{1}] = {2}[{1}][i] + theta*({2}[{1}][i+1]-{2}[{1}][i]);",
-
1561  instance_name,
-
1562  j,
-
1563  table_name);
-
1564  }
-
1565  } else {
-
1566  printer->fmt_line("{0} = {1}[i] + theta*({1}[i+1]-{1}[i]);",
-
1567  instance_name,
-
1568  table_name);
-
1569  }
-
1570  }
-
1571  printer->add_line("return 0;");
-
1572  } else {
-
1573  auto table_name = get_variable_name("t_" + name);
-
1574  printer->fmt_line("return {0}[i] + theta * ({0}[i+1] - {0}[i]);", table_name);
-
1575  }
-
1576  }
-
1577  printer->pop_block();
-
1578 }
-
1579 
-
1580 
-
1581 void CodegenCppVisitor::print_table_check_function(const Block& node) {
-
1582  auto statement = get_table_statement(node);
-
1583  auto table_variables = statement->get_table_vars();
-
1584  auto depend_variables = statement->get_depend_vars();
-
1585  const auto& from = statement->get_from();
-
1586  const auto& to = statement->get_to();
-
1587  auto name = node.get_node_name();
-
1588  auto internal_params = internal_method_parameters();
-
1589  auto with = statement->get_with()->eval();
-
1590  auto use_table_var = get_variable_name(naming::USE_TABLE_VARIABLE);
-
1591  auto tmin_name = get_variable_name("tmin_" + name);
-
1592  auto mfac_name = get_variable_name("mfac_" + name);
-
1593  auto float_type = default_float_data_type();
-
1594 
-
1595  printer->add_newline(2);
-
1596  printer->fmt_push_block("void {}({})",
-
1597  table_update_function_name(name),
-
1598  get_parameter_str(internal_params));
-
1599  {
-
1600  printer->fmt_push_block("if ({} == 0)", use_table_var);
-
1601  printer->add_line("return;");
-
1602  printer->pop_block();
-
1603 
-
1604  printer->add_line("static bool make_table = true;");
-
1605  for (const auto& variable: depend_variables) {
-
1606  printer->fmt_line("static {} save_{};", float_type, variable->get_node_name());
-
1607  }
-
1608 
-
1609  for (const auto& variable: depend_variables) {
-
1610  const auto& var_name = variable->get_node_name();
-
1611  const auto& instance_name = get_variable_name(var_name);
-
1612  printer->fmt_push_block("if (save_{} != {})", var_name, instance_name);
-
1613  printer->add_line("make_table = true;");
-
1614  printer->pop_block();
-
1615  }
-
1616 
-
1617  printer->push_block("if (make_table)");
-
1618  {
-
1619  printer->add_line("make_table = false;");
-
1620 
-
1621  printer->add_indent();
-
1622  printer->add_text(tmin_name, " = ");
-
1623  from->accept(*this);
-
1624  printer->add_text(';');
-
1625  printer->add_newline();
+
1482 void CodegenCppVisitor::print_table_replacement_function(const ast::Block& node) {
+
1483  auto name = node.get_node_name();
+
1484  auto statement = get_table_statement(node);
+
1485  auto table_variables = statement->get_table_vars();
+
1486  auto with = statement->get_with()->eval();
+
1487  auto use_table_var = get_variable_name(naming::USE_TABLE_VARIABLE);
+
1488  auto tmin_name = get_variable_name("tmin_" + name);
+
1489  auto mfac_name = get_variable_name("mfac_" + name);
+
1490  auto function_name = method_name("f_" + name);
+
1491 
+
1492  printer->add_newline(2);
+
1493  print_function_declaration(node, name);
+
1494  printer->push_block();
+
1495  {
+
1496  const auto& params = node.get_parameters();
+
1497  printer->fmt_push_block("if ({} == 0)", use_table_var);
+
1498  if (node.is_procedure_block()) {
+
1499  printer->fmt_line("{}({}, {});",
+
1500  function_name,
+
1501  internal_method_arguments(),
+
1502  params[0].get()->get_node_name());
+
1503  printer->add_line("return 0;");
+
1504  } else {
+
1505  printer->fmt_line("return {}({}, {});",
+
1506  function_name,
+
1507  internal_method_arguments(),
+
1508  params[0].get()->get_node_name());
+
1509  }
+
1510  printer->pop_block();
+
1511 
+
1512  printer->fmt_line("double xi = {} * ({} - {});",
+
1513  mfac_name,
+
1514  params[0].get()->get_node_name(),
+
1515  tmin_name);
+
1516  printer->push_block("if (isnan(xi))");
+
1517  if (node.is_procedure_block()) {
+
1518  for (const auto& var: table_variables) {
+
1519  auto var_name = get_variable_name(var->get_node_name());
+
1520  auto [is_array, array_length] = check_if_var_is_array(var->get_node_name());
+
1521  if (is_array) {
+
1522  for (int j = 0; j < array_length; j++) {
+
1523  printer->fmt_line("{}[{}] = xi;", var_name, j);
+
1524  }
+
1525  } else {
+
1526  printer->fmt_line("{} = xi;", var_name);
+
1527  }
+
1528  }
+
1529  printer->add_line("return 0;");
+
1530  } else {
+
1531  printer->add_line("return xi;");
+
1532  }
+
1533  printer->pop_block();
+
1534 
+
1535  printer->fmt_push_block("if (xi <= 0. || xi >= {}.)", with);
+
1536  printer->fmt_line("int index = (xi <= 0.) ? 0 : {};", with);
+
1537  if (node.is_procedure_block()) {
+
1538  for (const auto& variable: table_variables) {
+
1539  auto var_name = variable->get_node_name();
+
1540  auto instance_name = get_variable_name(var_name);
+
1541  auto table_name = get_variable_name("t_" + var_name);
+
1542  auto [is_array, array_length] = check_if_var_is_array(var_name);
+
1543  if (is_array) {
+
1544  for (int j = 0; j < array_length; j++) {
+
1545  printer->fmt_line(
+
1546  "{}[{}] = {}[{}][index];", instance_name, j, table_name, j);
+
1547  }
+
1548  } else {
+
1549  printer->fmt_line("{} = {}[index];", instance_name, table_name);
+
1550  }
+
1551  }
+
1552  printer->add_line("return 0;");
+
1553  } else {
+
1554  auto table_name = get_variable_name("t_" + name);
+
1555  printer->fmt_line("return {}[index];", table_name);
+
1556  }
+
1557  printer->pop_block();
+
1558 
+
1559  printer->add_line("int i = int(xi);");
+
1560  printer->add_line("double theta = xi - double(i);");
+
1561  if (node.is_procedure_block()) {
+
1562  for (const auto& var: table_variables) {
+
1563  auto var_name = var->get_node_name();
+
1564  auto instance_name = get_variable_name(var_name);
+
1565  auto table_name = get_variable_name("t_" + var_name);
+
1566  auto [is_array, array_length] = check_if_var_is_array(var->get_node_name());
+
1567  if (is_array) {
+
1568  for (size_t j = 0; j < array_length; j++) {
+
1569  printer->fmt_line(
+
1570  "{0}[{1}] = {2}[{1}][i] + theta*({2}[{1}][i+1]-{2}[{1}][i]);",
+
1571  instance_name,
+
1572  j,
+
1573  table_name);
+
1574  }
+
1575  } else {
+
1576  printer->fmt_line("{0} = {1}[i] + theta*({1}[i+1]-{1}[i]);",
+
1577  instance_name,
+
1578  table_name);
+
1579  }
+
1580  }
+
1581  printer->add_line("return 0;");
+
1582  } else {
+
1583  auto table_name = get_variable_name("t_" + name);
+
1584  printer->fmt_line("return {0}[i] + theta * ({0}[i+1] - {0}[i]);", table_name);
+
1585  }
+
1586  }
+
1587  printer->pop_block();
+
1588 }
+
1589 
+
1590 
+
1591 void CodegenCppVisitor::print_table_check_function(const Block& node) {
+
1592  auto statement = get_table_statement(node);
+
1593  auto table_variables = statement->get_table_vars();
+
1594  auto depend_variables = statement->get_depend_vars();
+
1595  const auto& from = statement->get_from();
+
1596  const auto& to = statement->get_to();
+
1597  auto name = node.get_node_name();
+
1598  auto internal_params = internal_method_parameters();
+
1599  auto with = statement->get_with()->eval();
+
1600  auto use_table_var = get_variable_name(naming::USE_TABLE_VARIABLE);
+
1601  auto tmin_name = get_variable_name("tmin_" + name);
+
1602  auto mfac_name = get_variable_name("mfac_" + name);
+
1603  auto float_type = default_float_data_type();
+
1604 
+
1605  printer->add_newline(2);
+
1606  printer->fmt_push_block("void {}({})",
+
1607  table_update_function_name(name),
+
1608  get_parameter_str(internal_params));
+
1609  {
+
1610  printer->fmt_push_block("if ({} == 0)", use_table_var);
+
1611  printer->add_line("return;");
+
1612  printer->pop_block();
+
1613 
+
1614  printer->add_line("static bool make_table = true;");
+
1615  for (const auto& variable: depend_variables) {
+
1616  printer->fmt_line("static {} save_{};", float_type, variable->get_node_name());
+
1617  }
+
1618 
+
1619  for (const auto& variable: depend_variables) {
+
1620  const auto& var_name = variable->get_node_name();
+
1621  const auto& instance_name = get_variable_name(var_name);
+
1622  printer->fmt_push_block("if (save_{} != {})", var_name, instance_name);
+
1623  printer->add_line("make_table = true;");
+
1624  printer->pop_block();
+
1625  }
1626 
-
1627  printer->add_indent();
-
1628  printer->add_text("double tmax = ");
-
1629  to->accept(*this);
-
1630  printer->add_text(';');
-
1631  printer->add_newline();
-
1632 
-
1633 
-
1634  printer->fmt_line("double dx = (tmax-{}) / {}.;", tmin_name, with);
-
1635  printer->fmt_line("{} = 1./dx;", mfac_name);
+
1627  printer->push_block("if (make_table)");
+
1628  {
+
1629  printer->add_line("make_table = false;");
+
1630 
+
1631  printer->add_indent();
+
1632  printer->add_text(tmin_name, " = ");
+
1633  from->accept(*this);
+
1634  printer->add_text(';');
+
1635  printer->add_newline();
1636 
-
1637  printer->fmt_line("double x = {};", tmin_name);
-
1638  printer->fmt_push_block("for (std::size_t i = 0; i < {}; x += dx, i++)", with + 1);
-
1639  auto function = method_name("f_" + name);
-
1640  if (node.is_procedure_block()) {
-
1641  printer->fmt_line("{}({}, x);", function, internal_method_arguments());
-
1642  for (const auto& variable: table_variables) {
-
1643  auto var_name = variable->get_node_name();
-
1644  auto instance_name = get_variable_name(var_name);
-
1645  auto table_name = get_variable_name("t_" + var_name);
-
1646  auto [is_array, array_length] = check_if_var_is_array(var_name);
-
1647  if (is_array) {
-
1648  for (int j = 0; j < array_length; j++) {
-
1649  printer->fmt_line(
-
1650  "{}[{}][i] = {}[{}];", table_name, j, instance_name, j);
-
1651  }
-
1652  } else {
-
1653  printer->fmt_line("{}[i] = {};", table_name, instance_name);
-
1654  }
-
1655  }
-
1656  } else {
-
1657  auto table_name = get_variable_name("t_" + name);
-
1658  printer->fmt_line("{}[i] = {}({}, x);",
-
1659  table_name,
-
1660  function,
-
1661  internal_method_arguments());
-
1662  }
-
1663  printer->pop_block();
-
1664 
-
1665  for (const auto& variable: depend_variables) {
-
1666  auto var_name = variable->get_node_name();
-
1667  auto instance_name = get_variable_name(var_name);
-
1668  printer->fmt_line("save_{} = {};", var_name, instance_name);
-
1669  }
-
1670  }
-
1671  printer->pop_block();
-
1672  }
-
1673  printer->pop_block();
-
1674 }
-
1675 
-
1676 std::string CodegenCppVisitor::get_object_specifiers(
-
1677  const std::unordered_set<CppObjectSpecifier>& specifiers) {
-
1678  std::string result;
-
1679  for (const auto& specifier: specifiers) {
-
1680  if (!result.empty()) {
-
1681  result += " ";
-
1682  }
-
1683  result += object_specifier_map[specifier];
-
1684  }
-
1685  return result;
-
1686 }
-
1687 
-
1688 const ast::TableStatement* CodegenCppVisitor::get_table_statement(const ast::Block& node) {
-
1689  const auto& table_statements = collect_nodes(node, {AstNodeType::TABLE_STATEMENT});
-
1690 
-
1691  if (table_statements.size() != 1) {
-
1692  auto message = fmt::format("One table statement expected in {} found {}",
-
1693  node.get_node_name(),
-
1694  table_statements.size());
-
1695  throw std::runtime_error(message);
-
1696  }
-
1697  return dynamic_cast<const ast::TableStatement*>(table_statements.front().get());
-
1698 }
-
1699 
+
1637  printer->add_indent();
+
1638  printer->add_text("double tmax = ");
+
1639  to->accept(*this);
+
1640  printer->add_text(';');
+
1641  printer->add_newline();
+
1642 
+
1643 
+
1644  printer->fmt_line("double dx = (tmax-{}) / {}.;", tmin_name, with);
+
1645  printer->fmt_line("{} = 1./dx;", mfac_name);
+
1646 
+
1647  printer->fmt_line("double x = {};", tmin_name);
+
1648  printer->fmt_push_block("for (std::size_t i = 0; i < {}; x += dx, i++)", with + 1);
+
1649  auto function = method_name("f_" + name);
+
1650  if (node.is_procedure_block()) {
+
1651  printer->fmt_line("{}({}, x);", function, internal_method_arguments());
+
1652  for (const auto& variable: table_variables) {
+
1653  auto var_name = variable->get_node_name();
+
1654  auto instance_name = get_variable_name(var_name);
+
1655  auto table_name = get_variable_name("t_" + var_name);
+
1656  auto [is_array, array_length] = check_if_var_is_array(var_name);
+
1657  if (is_array) {
+
1658  for (int j = 0; j < array_length; j++) {
+
1659  printer->fmt_line(
+
1660  "{}[{}][i] = {}[{}];", table_name, j, instance_name, j);
+
1661  }
+
1662  } else {
+
1663  printer->fmt_line("{}[i] = {};", table_name, instance_name);
+
1664  }
+
1665  }
+
1666  } else {
+
1667  auto table_name = get_variable_name("t_" + name);
+
1668  printer->fmt_line("{}[i] = {}({}, x);",
+
1669  table_name,
+
1670  function,
+
1671  internal_method_arguments());
+
1672  }
+
1673  printer->pop_block();
+
1674 
+
1675  for (const auto& variable: depend_variables) {
+
1676  auto var_name = variable->get_node_name();
+
1677  auto instance_name = get_variable_name(var_name);
+
1678  printer->fmt_line("save_{} = {};", var_name, instance_name);
+
1679  }
+
1680  }
+
1681  printer->pop_block();
+
1682  }
+
1683  printer->pop_block();
+
1684 }
+
1685 
+
1686 std::string CodegenCppVisitor::get_object_specifiers(
+
1687  const std::unordered_set<CppObjectSpecifier>& specifiers) {
+
1688  std::string result;
+
1689  for (const auto& specifier: specifiers) {
+
1690  if (!result.empty()) {
+
1691  result += " ";
+
1692  }
+
1693  result += object_specifier_map[specifier];
+
1694  }
+
1695  return result;
+
1696 }
+
1697 
+
1698 const ast::TableStatement* CodegenCppVisitor::get_table_statement(const ast::Block& node) {
+
1699  const auto& table_statements = collect_nodes(node, {AstNodeType::TABLE_STATEMENT});
1700 
-
1701 std::tuple<bool, int> CodegenCppVisitor::check_if_var_is_array(const std::string& name) {
-
1702  auto symbol = program_symtab->lookup_in_scope(name);
-
1703  if (!symbol) {
-
1704  throw std::runtime_error(
-
1705  fmt::format("CodegenCppVisitor:: {} not found in symbol table!", name));
+
1701  if (table_statements.size() != 1) {
+
1702  auto message = fmt::format("One table statement expected in {} found {}",
+
1703  node.get_node_name(),
+
1704  table_statements.size());
+
1705  throw std::runtime_error(message);
1706  }
-
1707  if (symbol->is_array()) {
-
1708  return {true, symbol->get_length()};
-
1709  } else {
-
1710  return {false, 0};
-
1711  }
-
1712 }
-
1713 
-
1714 void CodegenCppVisitor::print_rename_state_vars() const {
-
1715  for (const auto& state: info.state_vars) {
-
1716  auto state_name = state->get_name();
-
1717  auto lhs = get_variable_name(state_name);
-
1718  auto rhs = get_variable_name(state_name + "0");
-
1719 
-
1720  if (state->is_array()) {
-
1721  auto size = state->get_length();
-
1722  for (int i = 0; i < state->get_length(); ++i) {
-
1723  printer->fmt_line("{}[{}] = {};", lhs, i, rhs);
-
1724  }
-
1725  } else {
-
1726  printer->fmt_line("{} = {};", lhs, rhs);
-
1727  }
-
1728  }
-
1729 }
-
1730 } // namespace codegen
-
1731 } // namespace nmodl
+
1707  return dynamic_cast<const ast::TableStatement*>(table_statements.front().get());
+
1708 }
+
1709 
+
1710 
+
1711 std::tuple<bool, int> CodegenCppVisitor::check_if_var_is_array(const std::string& name) {
+
1712  auto symbol = program_symtab->lookup_in_scope(name);
+
1713  if (!symbol) {
+
1714  throw std::runtime_error(
+
1715  fmt::format("CodegenCppVisitor:: {} not found in symbol table!", name));
+
1716  }
+
1717  if (symbol->is_array()) {
+
1718  return {true, symbol->get_length()};
+
1719  } else {
+
1720  return {false, 0};
+
1721  }
+
1722 }
+
1723 
+
1724 void CodegenCppVisitor::print_rename_state_vars() const {
+
1725  for (const auto& state: info.state_vars) {
+
1726  auto state_name = state->get_name();
+
1727  auto lhs = get_variable_name(state_name);
+
1728  auto rhs = get_variable_name(state_name + "0");
+
1729 
+
1730  if (state->is_array()) {
+
1731  auto size = state->get_length();
+
1732  for (int i = 0; i < state->get_length(); ++i) {
+
1733  printer->fmt_line("{}[{}] = {};", lhs, i, rhs);
+
1734  }
+
1735  } else {
+
1736  printer->fmt_line("{} = {};", lhs, rhs);
+
1737  }
+
1738  }
+
1739 }
+
1740 } // namespace codegen
+
1741 } // namespace nmodl
nmodl::ast::FunctionCall::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:7061
nmodl::ast::IndexedName::get_length
std::shared_ptr< Expression > get_length() const noexcept
Getter for member variable IndexedName::length.
Definition: indexed_name.hpp:176
nmodl::codegen::CodegenCppVisitor::table_update_function_name
std::string table_update_function_name(const std::string &block_name) const
The name of the function that updates the table value if the parameters changed.
Definition: codegen_cpp_visitor.cpp:75
-
nmodl::codegen::CodegenCppVisitor::visit_eigen_linear_solver_block
void visit_eigen_linear_solver_block(const ast::EigenLinearSolverBlock &node) override
visit node of type ast::EigenLinearSolverBlock
Definition: codegen_cpp_visitor.cpp:1122
+
nmodl::codegen::CodegenCppVisitor::visit_eigen_linear_solver_block
void visit_eigen_linear_solver_block(const ast::EigenLinearSolverBlock &node) override
visit node of type ast::EigenLinearSolverBlock
Definition: codegen_cpp_visitor.cpp:1132
nmodl::codegen::CodegenCppVisitor::ion_variable_struct_required
bool ion_variable_struct_required() const
Check if a structure for ion variables is required.
Definition: codegen_cpp_visitor.cpp:38
nmodl::codegen::CodegenCppVisitor::need_semicolon
static bool need_semicolon(const ast::Statement &node)
Check if a semicolon is required at the end of given statement.
Definition: codegen_cpp_visitor.cpp:216
-
nmodl::codegen::CodegenCppVisitor::update_index_semantics
void update_index_semantics()
populate all index semantics needed for registration with coreneuron
Definition: codegen_cpp_visitor.cpp:1152
+
nmodl::codegen::CodegenCppVisitor::update_index_semantics
void update_index_semantics()
populate all index semantics needed for registration with coreneuron
Definition: codegen_cpp_visitor.cpp:1162
nmodl::codegen::utils::format_double_string< CodegenCppVisitor >
std::string format_double_string< CodegenCppVisitor >(const std::string &s_value)
Definition: codegen_utils.cpp:24
nmodl::ast::LocalListStatement::get_variables
const LocalVarVector & get_variables() const noexcept
Getter for member variable LocalListStatement::variables.
Definition: local_list_statement.hpp:205
-
nmodl::codegen::CodegenCppVisitor::print_table_replacement_function
void print_table_replacement_function(const ast::Block &)
Print replacement function for function or procedure using table.
Definition: codegen_cpp_visitor.cpp:1472
+
nmodl::codegen::CodegenCppVisitor::print_table_replacement_function
void print_table_replacement_function(const ast::Block &)
Print replacement function for function or procedure using table.
Definition: codegen_cpp_visitor.cpp:1482
-
nmodl::codegen::naming::RANDOM_SEMANTIC
static constexpr char RANDOM_SEMANTIC[]
semantic type for RANDOM variable
Definition: codegen_naming.hpp:129
+
nmodl::codegen::naming::RANDOM_SEMANTIC
static constexpr char RANDOM_SEMANTIC[]
semantic type for RANDOM variable
Definition: codegen_naming.hpp:132
nmodl::ast::Verbatim
Represents a C code block.
Definition: verbatim.hpp:38
-
nmodl::codegen::naming::NET_SEND_SEMANTIC
static constexpr char NET_SEND_SEMANTIC[]
semantic type for net send call
Definition: codegen_naming.hpp:132
-
nmodl::codegen::CodegenCppVisitor::visit_name
void visit_name(const ast::Name &node) override
visit node of type ast::Name
Definition: codegen_cpp_visitor.cpp:882
-
nmodl::codegen::naming::FOR_NETCON_VARIABLE
static constexpr char FOR_NETCON_VARIABLE[]
name of the integer variabe to store FOR_NETCON info.
Definition: codegen_naming.hpp:141
+
nmodl::codegen::naming::NET_SEND_SEMANTIC
static constexpr char NET_SEND_SEMANTIC[]
semantic type for net send call
Definition: codegen_naming.hpp:135
+
nmodl::codegen::CodegenCppVisitor::visit_name
void visit_name(const ast::Name &node) override
visit node of type ast::Name
Definition: codegen_cpp_visitor.cpp:892
+
nmodl::codegen::naming::FOR_NETCON_VARIABLE
static constexpr char FOR_NETCON_VARIABLE[]
name of the integer variabe to store FOR_NETCON info.
Definition: codegen_naming.hpp:144
nmodl::codegen::CodegenCppVisitor::has_parameter_of_name
bool has_parameter_of_name(const T &node, const std::string &name)
Check if function or procedure node has parameter with given name.
Definition: codegen_cpp_visitor.cpp:65
nmodl::codegen::CodegenCppVisitor::int_variables_size
int int_variables_size() const
Number of integer variables in the model.
Definition: codegen_cpp_visitor.cpp:186
nmodl::ast::Name::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:795
nmodl::codegen::CodegenCppVisitor::print_global_struct_function_table_ptrs
virtual void print_global_struct_function_table_ptrs()
Print the entries of for FUNCTION_TABLEs in the global struct.
Definition: codegen_cpp_visitor.cpp:443
-
nmodl::codegen::CodegenCppVisitor::visit_if_statement
void visit_if_statement(const ast::IfStatement &node) override
visit node of type ast::IfStatement
Definition: codegen_cpp_visitor.cpp:935
+
nmodl::codegen::CodegenCppVisitor::visit_if_statement
void visit_if_statement(const ast::IfStatement &node) override
visit node of type ast::IfStatement
Definition: codegen_cpp_visitor.cpp:945
nmodl::codegen::CodegenCppVisitor::ion_write_statements
std::vector< ShadowUseStatement > ion_write_statements(BlockType type)
For a given output block type, return statements for writing back ion variables.
Definition: codegen_cpp_visitor.cpp:297
-
nmodl::codegen::CodegenCppVisitor::visit_else_statement
void visit_else_statement(const ast::ElseStatement &node) override
visit node of type ast::ElseStatement
Definition: codegen_cpp_visitor.cpp:956
+
nmodl::codegen::CodegenCppVisitor::visit_else_statement
void visit_else_statement(const ast::ElseStatement &node) override
visit node of type ast::ElseStatement
Definition: codegen_cpp_visitor.cpp:966
nmodl::codegen::CodegenCppVisitor::breakpoint_exist
bool breakpoint_exist() const noexcept
Check if breakpoint node exist.
Definition: codegen_cpp_visitor.cpp:143
nmodl::visitor::DUState
DUState
Represent a state in Def-Use chain.
Definition: defuse_analyze_visitor.hpp:28
nmodl::codegen::BlockType::Destructor
@ Destructor
destructor block
-
nmodl::codegen::CodegenCppVisitor::print_eigen_linear_solver
void print_eigen_linear_solver(const std::string &float_type, int N)
Print linear solver using Eigen.
Definition: codegen_cpp_visitor.cpp:786
+
nmodl::codegen::CodegenCppVisitor::print_eigen_linear_solver
void print_eigen_linear_solver(const std::string &float_type, int N)
Print linear solver using Eigen.
Definition: codegen_cpp_visitor.cpp:796
nmodl::ast::Double
Represents a double variable.
Definition: double.hpp:53
nmodl::codegen::CodegenCppVisitor::write_ion_variable_name
static std::pair< std::string, std::string > write_ion_variable_name(const std::string &name)
Return ion variable name and corresponding ion write variable name.
Definition: codegen_cpp_visitor.cpp:407
@@ -1862,19 +1872,19 @@
nmodl::codegen::CodegenCppVisitor::net_receive_exist
bool net_receive_exist() const noexcept
Check if net_receive node exist.
Definition: codegen_cpp_visitor.cpp:138
nmodl::codegen::CodegenCppVisitor::SymbolType
std::shared_ptr< symtab::Symbol > SymbolType
Definition: codegen_cpp_visitor.hpp:295
nmodl::codegen::CodegenCppVisitor::get_int_variable_index
int get_int_variable_index(const std::string &var_name)
Definition: codegen_cpp_visitor.cpp:413
-
nmodl::codegen::naming::VOLTAGE_UNUSED_VARIABLE
static constexpr char VOLTAGE_UNUSED_VARIABLE[]
range variable for voltage when unused (for vectorized model)
Definition: codegen_naming.hpp:84
+
nmodl::codegen::naming::VOLTAGE_UNUSED_VARIABLE
static constexpr char VOLTAGE_UNUSED_VARIABLE[]
range variable for voltage when unused (for vectorized model)
Definition: codegen_naming.hpp:87
-
nmodl::codegen::naming::NRN_WATCH_CHECK_METHOD
static constexpr char NRN_WATCH_CHECK_METHOD[]
nrn_watch_check method in generated c++ file
Definition: codegen_naming.hpp:171
-
nmodl::codegen::CodegenCppVisitor::print_procedure
void print_procedure(const ast::ProcedureBlock &node)
Print NMODL procedure in target backend code.
Definition: codegen_cpp_visitor.cpp:528
+
nmodl::codegen::naming::NRN_WATCH_CHECK_METHOD
static constexpr char NRN_WATCH_CHECK_METHOD[]
nrn_watch_check method in generated c++ file
Definition: codegen_naming.hpp:174
+
nmodl::codegen::CodegenCppVisitor::print_procedure
void print_procedure(const ast::ProcedureBlock &node)
Print NMODL procedure in target backend code.
Definition: codegen_cpp_visitor.cpp:538
nmodl::ast::Ast::is_conductance_hint
virtual bool is_conductance_hint() const noexcept
Check if the ast node is an instance of ast::ConductanceHint.
Definition: ast.cpp:224
nmodl::codegen::CodegenCppVisitor::float_variables_size
int float_variables_size() const
Number of float variables in the model.
Definition: codegen_cpp_visitor.cpp:176
nmodl::codegen::CodegenCppVisitor::print_backend_info
void print_backend_info()
Print top file header printed in generated code.
Definition: codegen_cpp_visitor.cpp:423
-
nmodl::codegen::CodegenCppVisitor::visit_from_statement
void visit_from_statement(const ast::FromStatement &node) override
visit node of type ast::FromStatement
Definition: codegen_cpp_visitor.cpp:970
-
nmodl::codegen::CodegenCppVisitor::print_functor_definition
void print_functor_definition(const ast::EigenNewtonSolverBlock &node)
Based on the EigenNewtonSolverBlock passed print the definition needed for its functor.
Definition: codegen_cpp_visitor.cpp:712
+
nmodl::codegen::CodegenCppVisitor::visit_from_statement
void visit_from_statement(const ast::FromStatement &node) override
visit node of type ast::FromStatement
Definition: codegen_cpp_visitor.cpp:980
+
nmodl::codegen::CodegenCppVisitor::print_functor_definition
void print_functor_definition(const ast::EigenNewtonSolverBlock &node)
Based on the EigenNewtonSolverBlock passed print the definition needed for its functor.
Definition: codegen_cpp_visitor.cpp:722
nmodl::codegen::CodegenCppVisitor::print_global_var_struct_assertions
virtual void print_global_var_struct_assertions() const
Print static assertions about the global variable struct.
Definition: codegen_cpp_visitor.cpp:451
-
nmodl::codegen::CodegenCppVisitor::print_mechanism_info
void print_mechanism_info()
Print backend code for byte array that has mechanism information (to be registered with NEURON/CoreNE...
Definition: codegen_cpp_visitor.cpp:585
-
nmodl::codegen::CodegenCppVisitor::visit_eigen_newton_solver_block
void visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock &node) override
visit node of type ast::EigenNewtonSolverBlock
Definition: codegen_cpp_visitor.cpp:1093
-
nmodl::codegen::CodegenCppVisitor::visit_prime_name
void visit_prime_name(const ast::PrimeName &node) override
visit node of type ast::PrimeName
Definition: codegen_cpp_visitor.cpp:892
+
nmodl::codegen::CodegenCppVisitor::print_mechanism_info
void print_mechanism_info()
Print backend code for byte array that has mechanism information (to be registered with NEURON/CoreNE...
Definition: codegen_cpp_visitor.cpp:595
+
nmodl::codegen::CodegenCppVisitor::visit_eigen_newton_solver_block
void visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock &node) override
visit node of type ast::EigenNewtonSolverBlock
Definition: codegen_cpp_visitor.cpp:1103
+
nmodl::codegen::CodegenCppVisitor::visit_prime_name
void visit_prime_name(const ast::PrimeName &node) override
visit node of type ast::PrimeName
Definition: codegen_cpp_visitor.cpp:902
nmodl::ast::EigenNewtonSolverBlock::get_initialize_block
std::shared_ptr< StatementBlock > get_initialize_block() const noexcept
Getter for member variable EigenNewtonSolverBlock::initialize_block.
Definition: eigen_newton_solver_block.hpp:203
@@ -1882,65 +1892,65 @@
nmodl::codegen::MemberType::index
@ index
index / int variables
nmodl::visitor::SymtabVisitor::visit_statement_block
void visit_statement_block(ast::StatementBlock &node) override
visit node of type ast::StatementBlock
Definition: symtab_visitor.cpp:99
nmodl::ast::EigenLinearSolverBlock::get_setup_x_block
std::shared_ptr< StatementBlock > get_setup_x_block() const noexcept
Getter for member variable EigenLinearSolverBlock::setup_x_block.
Definition: eigen_linear_solver_block.hpp:210
-
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:147
+
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:150
nmodl::codegen::utils::format_float_string< CodegenCppVisitor >
std::string format_float_string< CodegenCppVisitor >(const std::string &s_value)
Definition: codegen_utils.cpp:34
nmodl::ast::Integer::get_value
int get_value() const noexcept
Getter for member variable Integer::value.
Definition: integer.hpp:157
nmodl::ast::IndexedName::get_name
std::shared_ptr< Identifier > get_name() const noexcept
Getter for member variable IndexedName::name.
Definition: indexed_name.hpp:167
nmodl::ast::EigenLinearSolverBlock::get_variable_block
std::shared_ptr< StatementBlock > get_variable_block() const noexcept
Getter for member variable EigenLinearSolverBlock::variable_block.
Definition: eigen_linear_solver_block.hpp:192
nmodl::codegen::CodegenCppVisitor::range_variable_setup_required
bool range_variable_setup_required() const noexcept
Check if setup_range_variable function is required.
Definition: codegen_cpp_visitor.cpp:157
nmodl::ast::MutexLock
Represent MUTEXLOCK statement in NMODL.
Definition: mutex_lock.hpp:38
-
nmodl::codegen::CodegenCppVisitor::print_statement_block
void print_statement_block(const ast::StatementBlock &node, bool open_brace=true, bool close_brace=true)
Print any statement block in nmodl with option to (not) print braces.
Definition: codegen_cpp_visitor.cpp:637
+
nmodl::codegen::CodegenCppVisitor::print_statement_block
void print_statement_block(const ast::StatementBlock &node, bool open_brace=true, bool close_brace=true)
Print any statement block in nmodl with option to (not) print braces.
Definition: codegen_cpp_visitor.cpp:647
nmodl::ast::Double::get_value
const std::string & get_value() const noexcept
Getter for member variable Double::value.
Definition: double.hpp:158
nmodl::ast::StatementBlock::insert_statement
StatementVector::const_iterator insert_statement(StatementVector::const_iterator position, const std::shared_ptr< Statement > &n)
Insert member to statements.
Definition: ast.cpp:3130
nmodl::ast::Ast::is_procedure_block
virtual bool is_procedure_block() const noexcept
Check if the ast node is an instance of ast::ProcedureBlock.
Definition: ast.cpp:144
nmodl::ast::TableStatement
Represents TABLE statement in NMODL.
Definition: table_statement.hpp:39
nmodl::ast::Ast::is_protect_statement
virtual bool is_protect_statement() const noexcept
Check if the ast node is an instance of ast::ProtectStatement.
Definition: ast.cpp:228
-
nmodl::codegen::CodegenCppVisitor::visit_binary_expression
void visit_binary_expression(const ast::BinaryExpression &node) override
visit node of type ast::BinaryExpression
Definition: codegen_cpp_visitor.cpp:998
+
nmodl::codegen::CodegenCppVisitor::visit_binary_expression
void visit_binary_expression(const ast::BinaryExpression &node) override
visit node of type ast::BinaryExpression
Definition: codegen_cpp_visitor.cpp:1008
nmodl::ast::VarName
Represents a variable.
Definition: var_name.hpp:43
nmodl::ast::Integer
Represents an integer variable.
Definition: integer.hpp:49
-
nmodl::codegen::CodegenCppVisitor::get_object_specifiers
std::string get_object_specifiers(const std::unordered_set< CppObjectSpecifier > &)
Definition: codegen_cpp_visitor.cpp:1676
-
nmodl::codegen::CodegenCppVisitor::get_float_variables
std::vector< SymbolType > get_float_variables() const
Determine all float variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1228
+
nmodl::codegen::CodegenCppVisitor::get_object_specifiers
std::string get_object_specifiers(const std::unordered_set< CppObjectSpecifier > &)
Definition: codegen_cpp_visitor.cpp:1686
+
nmodl::codegen::CodegenCppVisitor::get_float_variables
std::vector< SymbolType > get_float_variables() const
Determine all float variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1238
nmodl::ast::Ast::is_expression_statement
virtual bool is_expression_statement() const noexcept
Check if the ast node is an instance of ast::ExpressionStatement.
Definition: ast.cpp:226
-
nmodl::codegen::naming::NODE_AREA_VARIABLE
static constexpr char NODE_AREA_VARIABLE[]
inbuilt neuron variable for area of the compartment
Definition: codegen_naming.hpp:63
-
nmodl::codegen::CodegenCppVisitor::print_function_tables
void print_function_tables(const ast::FunctionTableBlock &node)
Print the internal function for FUNCTION_TABLES.
Definition: codegen_cpp_visitor.cpp:553
-
nmodl::codegen::CodegenCppVisitor::visit_paren_expression
void visit_paren_expression(const ast::ParenExpression &node) override
visit node of type ast::ParenExpression
Definition: codegen_cpp_visitor.cpp:991
-
nmodl::codegen::CodegenCppVisitor::print_namespace_start
void print_namespace_start()
Prints the start of the simulator namespace.
Definition: codegen_cpp_visitor.cpp:621
+
nmodl::codegen::naming::NODE_AREA_VARIABLE
static constexpr char NODE_AREA_VARIABLE[]
inbuilt neuron variable for area of the compartment
Definition: codegen_naming.hpp:66
+
nmodl::codegen::CodegenCppVisitor::print_function_tables
void print_function_tables(const ast::FunctionTableBlock &node)
Print the internal function for FUNCTION_TABLES.
Definition: codegen_cpp_visitor.cpp:563
+
nmodl::codegen::CodegenCppVisitor::visit_paren_expression
void visit_paren_expression(const ast::ParenExpression &node) override
visit node of type ast::ParenExpression
Definition: codegen_cpp_visitor.cpp:1001
+
nmodl::codegen::CodegenCppVisitor::print_namespace_start
void print_namespace_start()
Prints the start of the simulator namespace.
Definition: codegen_cpp_visitor.cpp:631
nmodl::visitor::SymtabVisitor
Concrete visitor for constructing symbol table from AST.
Definition: symtab_visitor.hpp:37
nmodl::codegen::CodegenCppVisitor::net_receive_buffering_required
bool net_receive_buffering_required() const noexcept
Check if net receive/send buffering kernels required.
Definition: codegen_cpp_visitor.cpp:120
nmodl::codegen::CodegenCppVisitor::update_if_ion_variable_name
std::string update_if_ion_variable_name(const std::string &name) const
Determine the updated name if the ion variable has been optimized.
Definition: codegen_cpp_visitor.cpp:384
nmodl::ast::ElseStatement::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:9855
nmodl::ast::EigenNewtonSolverBlock::get_n_state_vars
std::shared_ptr< Integer > get_n_state_vars() const noexcept
Getter for member variable EigenNewtonSolverBlock::n_state_vars.
Definition: eigen_newton_solver_block.hpp:185
-
nmodl::codegen::CodegenCppVisitor::print_function
void print_function(const ast::FunctionBlock &node)
Print NMODL function in target backend code.
Definition: codegen_cpp_visitor.cpp:533
+
nmodl::codegen::CodegenCppVisitor::print_function
void print_function(const ast::FunctionBlock &node)
Print NMODL function in target backend code.
Definition: codegen_cpp_visitor.cpp:543
nmodl::ast::VarName::get_index
std::shared_ptr< Expression > get_index() const noexcept
Getter for member variable VarName::index.
Definition: var_name.hpp:182
nmodl::Version::GIT_REVISION
static const std::string GIT_REVISION
git revision id
Definition: config.h:33
nmodl::logger
logger_type logger
Definition: logger.cpp:34
-
nmodl::codegen::CodegenCppVisitor::visit_mutex_unlock
void visit_mutex_unlock(const ast::MutexUnlock &node) override
visit node of type ast::MutexUnlock
Definition: codegen_cpp_visitor.cpp:1077
+
nmodl::codegen::CodegenCppVisitor::visit_mutex_unlock
void visit_mutex_unlock(const ast::MutexUnlock &node) override
visit node of type ast::MutexUnlock
Definition: codegen_cpp_visitor.cpp:1087
nmodl::ast::Verbatim::get_statement
std::shared_ptr< String > get_statement() const noexcept
Getter for member variable Verbatim::statement.
Definition: verbatim.hpp:157
nmodl::visitor::DefUseAnalyzeVisitor
Visitor to return Def-Use chain for a given variable in the block/node
Definition: defuse_analyze_visitor.hpp:214
-
nmodl::codegen::CodegenCppVisitor::visit_unit
void visit_unit(const ast::Unit &node) override
visit node of type ast::Unit
Definition: codegen_cpp_visitor.cpp:887
+
nmodl::codegen::CodegenCppVisitor::visit_unit
void visit_unit(const ast::Unit &node) override
visit node of type ast::Unit
Definition: codegen_cpp_visitor.cpp:897
nmodl::ast::BinaryExpression::get_rhs
std::shared_ptr< Expression > get_rhs() const noexcept
Getter for member variable BinaryExpression::rhs.
Definition: binary_expression.hpp:179
nmodl::ast::EigenNewtonSolverBlock
Represent newton solver solution block based on Eigen.
Definition: eigen_newton_solver_block.hpp:38
nmodl::ast::Boolean::eval
bool eval() const
Return value of the ast node.
Definition: boolean.hpp:243
-
nmodl::codegen::CodegenCppVisitor::visit_update_dt
void visit_update_dt(const ast::UpdateDt &node) override
visit node of type ast::UpdateDt
Definition: codegen_cpp_visitor.cpp:1057
+
nmodl::codegen::CodegenCppVisitor::visit_update_dt
void visit_update_dt(const ast::UpdateDt &node) override
visit node of type ast::UpdateDt
Definition: codegen_cpp_visitor.cpp:1067
codegen_helper_visitor.hpp
Helper visitor to gather AST information to help code generation.
nmodl::ast::FromStatement::get_increment
std::shared_ptr< Expression > get_increment() const noexcept
Getter for member variable FromStatement::increment.
Definition: from_statement.hpp:204
-
nmodl::codegen::naming::CONDUCTANCE_VARIABLE
static constexpr char CONDUCTANCE_VARIABLE[]
range variable for conductance
Definition: codegen_naming.hpp:75
+
nmodl::codegen::naming::CONDUCTANCE_VARIABLE
static constexpr char CONDUCTANCE_VARIABLE[]
range variable for conductance
Definition: codegen_naming.hpp:78
nmodl::ast::VarName::get_at
std::shared_ptr< Integer > get_at() const noexcept
Getter for member variable VarName::at.
Definition: var_name.hpp:173
nmodl::codegen::CodegenCppVisitor::is_function_table_call
bool is_function_table_call(const std::string &name) const
Definition: codegen_cpp_visitor.cpp:169
nmodl::ast::EigenLinearSolverBlock::get_initialize_block
std::shared_ptr< StatementBlock > get_initialize_block() const noexcept
Getter for member variable EigenLinearSolverBlock::initialize_block.
Definition: eigen_linear_solver_block.hpp:201
nmodl::visitor::DefUseAnalyzeVisitor::analyze
DUChain analyze(const ast::Ast &node, const std::string &name)
compute def-use chain for a variable within the node
Definition: defuse_analyze_visitor.cpp:419
nmodl::stringutils::trim_newline
static std::string trim_newline(std::string text)
Definition: string_utils.hpp:83
-
nmodl::codegen::naming::DEFAULT_FLOAT_TYPE
static constexpr char DEFAULT_FLOAT_TYPE[]
default float variable type
Definition: codegen_naming.hpp:108
+
nmodl::codegen::naming::DEFAULT_FLOAT_TYPE
static constexpr char DEFAULT_FLOAT_TYPE[]
default float variable type
Definition: codegen_naming.hpp:111
nmodl::ast::FunctionTableBlock::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:3800
nmodl::ast::EigenLinearSolverBlock::get_update_states_block
std::shared_ptr< StatementBlock > get_update_states_block() const noexcept
Getter for member variable EigenLinearSolverBlock::update_states_block.
Definition: eigen_linear_solver_block.hpp:219
-
nmodl::codegen::CodegenCppVisitor::get_int_variables
std::vector< IndexVariableInfo > get_int_variables()
Determine all int variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1304
+
nmodl::codegen::CodegenCppVisitor::get_int_variables
std::vector< IndexVariableInfo > get_int_variables()
Determine all int variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1314
codegen_cpp_visitor.hpp
Visitor for printing C++ code compatible with legacy api of CoreNEURON
nmodl::ast::StatementBlock::get_statements
const StatementVector & get_statements() const noexcept
Getter for member variable StatementBlock::statements.
Definition: statement_block.hpp:221
-
nmodl::codegen::CodegenCppVisitor::visit_function_call
void visit_function_call(const ast::FunctionCall &node) override
visit node of type ast::FunctionCall
Definition: codegen_cpp_visitor.cpp:1036
+
nmodl::codegen::CodegenCppVisitor::visit_function_call
void visit_function_call(const ast::FunctionCall &node) override
visit node of type ast::FunctionCall
Definition: codegen_cpp_visitor.cpp:1046
nmodl::ast::Block
Base class for all block scoped nodes.
Definition: block.hpp:41
nmodl::ast::IfStatement::get_elseifs
const ElseIfStatementVector & get_elseifs() const noexcept
Getter for member variable IfStatement::elseifs.
Definition: if_statement.hpp:182
nmodl::ast::EigenNewtonSolverBlock::get_setup_x_block
std::shared_ptr< StatementBlock > get_setup_x_block() const noexcept
Getter for member variable EigenNewtonSolverBlock::setup_x_block.
Definition: eigen_newton_solver_block.hpp:212
@@ -1951,21 +1961,21 @@
nmodl::stringutils::trim
static std::string trim(std::string text)
Definition: string_utils.hpp:63
visitor_utils.hpp
Utility functions for visitors implementation.
nmodl::codegen::BlockType::Equation
@ Equation
breakpoint block
-
nmodl::codegen::naming::USE_TABLE_VARIABLE
static constexpr char USE_TABLE_VARIABLE[]
global variable to indicate if table is used
Definition: codegen_naming.hpp:78
+
nmodl::codegen::naming::USE_TABLE_VARIABLE
static constexpr char USE_TABLE_VARIABLE[]
global variable to indicate if table is used
Definition: codegen_naming.hpp:81
nmodl::ast::Float::get_value
const std::string & get_value() const noexcept
Getter for member variable Float::value.
Definition: float.hpp:148
nmodl::ast::EigenLinearSolverBlock::get_finalize_block
std::shared_ptr< StatementBlock > get_finalize_block() const noexcept
Getter for member variable EigenLinearSolverBlock::finalize_block.
Definition: eigen_linear_solver_block.hpp:228
nmodl::ast::Float
Represents a float variable.
Definition: float.hpp:44
nmodl::ast::Ast::is_verbatim
virtual bool is_verbatim() const noexcept
Check if the ast node is an instance of ast::Verbatim.
Definition: ast.cpp:282
nmodl::ast::IndexedName
Represents specific element of an array variable.
Definition: indexed_name.hpp:48
nmodl::ast::String::eval
std::string eval() const
Return value of the ast node.
Definition: string.hpp:237
-
nmodl::codegen::regex_special_chars
const std::regex regex_special_chars
Definition: codegen_cpp_visitor.cpp:849
+
nmodl::codegen::regex_special_chars
const std::regex regex_special_chars
Definition: codegen_cpp_visitor.cpp:859
nmodl::ast::FromStatement::get_from
std::shared_ptr< Expression > get_from() const noexcept
Getter for member variable FromStatement::from.
Definition: from_statement.hpp:186
-
nmodl::codegen::CodegenCppVisitor::setup
void setup(const ast::Program &node)
Setup the target backend code generator.
Definition: codegen_cpp_visitor.cpp:1418
-
nmodl::codegen::CodegenCppVisitor::visit_unary_operator
void visit_unary_operator(const ast::UnaryOperator &node) override
visit node of type ast::UnaryOperator
Definition: codegen_cpp_visitor.cpp:1021
-
nmodl::codegen::naming::POINT_PROCESS_SEMANTIC
static constexpr char POINT_PROCESS_SEMANTIC[]
semantic type for point process variable
Definition: codegen_naming.hpp:120
-
nmodl::codegen::CodegenCppVisitor::visit_mutex_lock
void visit_mutex_lock(const ast::MutexLock &node) override
visit node of type ast::MutexLock
Definition: codegen_cpp_visitor.cpp:1070
-
nmodl::codegen::CodegenCppVisitor::visit_boolean
void visit_boolean(const ast::Boolean &node) override
visit node of type ast::Boolean
Definition: codegen_cpp_visitor.cpp:877
+
nmodl::codegen::CodegenCppVisitor::setup
void setup(const ast::Program &node)
Setup the target backend code generator.
Definition: codegen_cpp_visitor.cpp:1428
+
nmodl::codegen::CodegenCppVisitor::visit_unary_operator
void visit_unary_operator(const ast::UnaryOperator &node) override
visit node of type ast::UnaryOperator
Definition: codegen_cpp_visitor.cpp:1031
+
nmodl::codegen::naming::POINT_PROCESS_SEMANTIC
static constexpr char POINT_PROCESS_SEMANTIC[]
semantic type for point process variable
Definition: codegen_naming.hpp:123
+
nmodl::codegen::CodegenCppVisitor::visit_mutex_lock
void visit_mutex_lock(const ast::MutexLock &node) override
visit node of type ast::MutexLock
Definition: codegen_cpp_visitor.cpp:1080
+
nmodl::codegen::CodegenCppVisitor::visit_boolean
void visit_boolean(const ast::Boolean &node) override
visit node of type ast::Boolean
Definition: codegen_cpp_visitor.cpp:887
nmodl::ast::Ast::is_else_if_statement
virtual bool is_else_if_statement() const noexcept
Check if the ast node is an instance of ast::ElseIfStatement.
Definition: ast.cpp:236
nmodl::codegen::CodegenCppVisitor::nrn_cur_required
bool nrn_cur_required() const noexcept
Check if nrn_cur function is required.
Definition: codegen_cpp_visitor.cpp:133
nmodl::ast::Ast::is_table_statement
virtual bool is_table_statement() const noexcept
Check if the ast node is an instance of ast::TableStatement.
Definition: ast.cpp:258
@@ -1974,28 +1984,30 @@
nmodl::codegen::BlockType::Constructor
@ Constructor
constructor block
nmodl::ast::MutexUnlock
Represent MUTEXUNLOCK statement in NMODL.
Definition: mutex_unlock.hpp:38
nmodl::ast::StatementBlock::get_symbol_table
symtab::SymbolTable * get_symbol_table() const override
Return associated symbol table for the current ast node.
Definition: statement_block.hpp:164
-
nmodl::codegen::CodegenCppVisitor::visit_double
void visit_double(const ast::Double &node) override
visit node of type ast::Double
Definition: codegen_cpp_visitor.cpp:872
-
nmodl::codegen::CodegenCppVisitor::print_using_namespace
void print_using_namespace()
Prints f"using namespace {namespace_name()}".
Definition: codegen_cpp_visitor.cpp:617
+
nmodl::codegen::CodegenCppVisitor::visit_double
void visit_double(const ast::Double &node) override
visit node of type ast::Double
Definition: codegen_cpp_visitor.cpp:882
+
nmodl::codegen::CodegenCppVisitor::print_using_namespace
void print_using_namespace()
Prints f"using namespace {namespace_name()}".
Definition: codegen_cpp_visitor.cpp:627
nmodl::codegen::CodegenCppVisitor::net_send_buffer_required
bool net_send_buffer_required() const noexcept
Check if net_send_buffer is required.
Definition: codegen_cpp_visitor.cpp:110
-
nmodl::codegen::CodegenCppVisitor::visit_float
void visit_float(const ast::Float &node) override
visit node of type ast::Float
Definition: codegen_cpp_visitor.cpp:867
-
nmodl::codegen::CodegenCppVisitor::visit_string
void visit_string(const ast::String &node) override
visit node of type ast::String
Definition: codegen_cpp_visitor.cpp:852
+
nmodl::is_nrn_pointing
bool is_nrn_pointing(const std::string &name)
Is given name nrn_pointing.
Definition: visitor_utils.cpp:295
+
nmodl::codegen::CodegenCppVisitor::visit_float
void visit_float(const ast::Float &node) override
visit node of type ast::Float
Definition: codegen_cpp_visitor.cpp:877
+
nmodl::codegen::CodegenCppVisitor::visit_string
void visit_string(const ast::String &node) override
visit node of type ast::String
Definition: codegen_cpp_visitor.cpp:862
nmodl::codegen::IndexSemantics
Represent semantic information for index variable.
Definition: codegen_info.hpp:270
nmodl::codegen::BlockType::Watch
@ Watch
watch block
nmodl::symtab::syminfo::to_string
std::string to_string(const T &obj)
Definition: symbol_properties.hpp:279
nmodl::ast::Ast::is_block_comment
virtual bool is_block_comment() const noexcept
Check if the ast node is an instance of ast::BlockComment.
Definition: ast.cpp:286
nmodl::codegen::utils::format_float_string
std::string format_float_string(const std::string &s_value)
Handles the float constants format being printed in the generated code.
-
nmodl::codegen::CodegenCppVisitor::visit_solution_expression
void visit_solution_expression(const ast::SolutionExpression &node) override
visit node of type ast::SolutionExpression
Definition: codegen_cpp_visitor.cpp:1082
-
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:144
+
nmodl::codegen::CodegenCppVisitor::visit_solution_expression
void visit_solution_expression(const ast::SolutionExpression &node) override
visit node of type ast::SolutionExpression
Definition: codegen_cpp_visitor.cpp:1092
+
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:147
+
nmodl::codegen::CodegenCppVisitor::print_nrn_pointing
virtual void print_nrn_pointing(const ast::FunctionCall &node)
Print nrn_pointing.
Definition: codegen_cpp_visitor.cpp:532
nmodl::ast::FunctionCall::get_arguments
const ExpressionVector & get_arguments() const noexcept
Getter for member variable FunctionCall::arguments.
Definition: function_call.hpp:166
-
nmodl::codegen::naming::POINTER_SEMANTIC
static constexpr char POINTER_SEMANTIC[]
semantic type for pointer variable
Definition: codegen_naming.hpp:123
+
nmodl::codegen::naming::POINTER_SEMANTIC
static constexpr char POINTER_SEMANTIC[]
semantic type for pointer variable
Definition: codegen_naming.hpp:126
nmodl::codegen::CodegenCppVisitor::print_global_var_struct_decl
virtual void print_global_var_struct_decl()
Instantiate global var instance.
Definition: codegen_cpp_visitor.cpp:464
-
nmodl::codegen::naming::AREA_SEMANTIC
static constexpr char AREA_SEMANTIC[]
semantic type for area variable
Definition: codegen_naming.hpp:117
-
nmodl::codegen::CodegenCppVisitor::visit_var_name
void visit_var_name(const ast::VarName &node) override
Definition: codegen_cpp_visitor.cpp:900
+
nmodl::codegen::naming::AREA_SEMANTIC
static constexpr char AREA_SEMANTIC[]
semantic type for area variable
Definition: codegen_naming.hpp:120
+
nmodl::codegen::CodegenCppVisitor::visit_var_name
void visit_var_name(const ast::VarName &node) override
Definition: codegen_cpp_visitor.cpp:910
nmodl::codegen::CodegenInfo::mod_file
std::string mod_file
name of mod file
Definition: codegen_info.hpp:299
-
nmodl::codegen::CodegenCppVisitor::print_nmodl_constants
void print_nmodl_constants()
Print the nmodl constants used in backend code.
Definition: codegen_cpp_visitor.cpp:832
+
nmodl::codegen::CodegenCppVisitor::print_nmodl_constants
void print_nmodl_constants()
Print the nmodl constants used in backend code.
Definition: codegen_cpp_visitor.cpp:842
nmodl::ast::ParenExpression::get_expression
std::shared_ptr< Expression > get_expression() const noexcept
Getter for member variable ParenExpression::expression.
Definition: paren_expression.hpp:143
nmodl::ast::BinaryExpression::get_op
const BinaryOperator & get_op() const noexcept
Getter for member variable BinaryExpression::op.
Definition: binary_expression.hpp:170
-
nmodl::codegen::CodegenCppVisitor::print_table_check_function
void print_table_check_function(const ast::Block &)
Print check_function() for functions or procedure using table.
Definition: codegen_cpp_visitor.cpp:1581
+
nmodl::codegen::CodegenCppVisitor::print_table_check_function
void print_table_check_function(const ast::Block &)
Print check_function() for functions or procedure using table.
Definition: codegen_cpp_visitor.cpp:1591
nmodl::ast::Ast::is_from_statement
virtual bool is_from_statement() const noexcept
Check if the ast node is an instance of ast::FromStatement.
Definition: ast.cpp:230
nmodl::ast::PrimeName
Represents a prime variable (for ODE)
Definition: prime_name.hpp:48
nmodl::codegen::CodegenCppVisitor::read_ion_variable_name
static std::pair< std::string, std::string > read_ion_variable_name(const std::string &name)
Return ion variable name and corresponding ion read variable name.
Definition: codegen_cpp_visitor.cpp:401
@@ -2003,9 +2015,9 @@
nmodl::ast::ElseIfStatement::get_statement_block
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable ElseIfStatement::statement_block.
Definition: else_if_statement.hpp:168
nmodl::visitor::RenameVisitor
Blindly rename given variable to new name
Definition: rename_visitor.hpp:43
nmodl::codegen::CodegenCppVisitor::get_arg_str
static std::string get_arg_str(const ParamVector &params)
Generate the string representing the parameters in a function call.
Definition: codegen_cpp_visitor.cpp:42
-
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:165
+
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:168
nmodl::ast::UnaryOperator::eval
std::string eval() const
Return enum value in string form.
Definition: unary_operator.hpp:214
-
nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
Definition: codegen_naming.hpp:199
+
nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
Definition: codegen_naming.hpp:202
codegen_utils.hpp
Implement utility functions for codegen visitors.
nmodl::ast::Boolean
Represents a boolean variable.
Definition: boolean.hpp:42
@@ -2014,18 +2026,18 @@
nmodl::ast::AstNodeType::LOCAL_VAR
@ LOCAL_VAR
type of ast::LocalVar
nmodl::codegen::CodegenHelperVisitor::analyze
codegen::CodegenInfo analyze(const ast::Program &node)
run visitor and return information for code generation
Definition: codegen_helper_visitor.cpp:818
nmodl::ast::WhileStatement::get_statement_block
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable WhileStatement::statement_block.
Definition: while_statement.hpp:168
-
nmodl::codegen::CodegenCppVisitor::visit_integer
void visit_integer(const ast::Integer &node) override
visit node of type ast::Integer
Definition: codegen_cpp_visitor.cpp:861
+
nmodl::codegen::CodegenCppVisitor::visit_integer
void visit_integer(const ast::Integer &node) override
visit node of type ast::Integer
Definition: codegen_cpp_visitor.cpp:871
nmodl::ast::EigenLinearSolverBlock
Represent linear solver solution block based on Eigen.
Definition: eigen_linear_solver_block.hpp:38
nmodl::collect_nodes
std::vector< std::shared_ptr< const ast::Ast > > collect_nodes(const ast::Ast &node, const std::vector< ast::AstNodeType > &types)
traverse node recursively and collect nodes of given types
Definition: visitor_utils.cpp:205
defuse_analyze_visitor.hpp
Visitor to return Def-Use chain for a given variable in the block/node
nmodl::ast::FunctionBlock::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:3963
nmodl::ast::UpdateDt
Statement to indicate a change in timestep in a given block.
Definition: update_dt.hpp:38
nmodl::ast::EigenNewtonSolverBlock::get_functor_block
std::shared_ptr< StatementBlock > get_functor_block() const noexcept
Getter for member variable EigenNewtonSolverBlock::functor_block.
Definition: eigen_newton_solver_block.hpp:221
-
nmodl::codegen::CodegenCppVisitor::get_table_statement
const ast::TableStatement * get_table_statement(const ast::Block &)
Definition: codegen_cpp_visitor.cpp:1688
+
nmodl::codegen::CodegenCppVisitor::get_table_statement
const ast::TableStatement * get_table_statement(const ast::Block &)
Definition: codegen_cpp_visitor.cpp:1698
nmodl::codegen::CodegenCppVisitor::format_float_string
std::string format_float_string(const std::string &value)
Convert a given float value to its string representation.
Definition: codegen_cpp_visitor.cpp:205
-
nmodl::codegen::CodegenCppVisitor::check_if_var_is_array
std::tuple< bool, int > check_if_var_is_array(const std::string &name)
Check if the given name exist in the symbol.
Definition: codegen_cpp_visitor.cpp:1701
-
nmodl::codegen::CodegenCppVisitor::is_functor_const
bool is_functor_const(const ast::StatementBlock &variable_block, const ast::StatementBlock &functor_block)
Checks whether the functor_block generated by sympy solver modifies any variable outside its scope.
Definition: codegen_cpp_visitor.cpp:669
+
nmodl::codegen::CodegenCppVisitor::check_if_var_is_array
std::tuple< bool, int > check_if_var_is_array(const std::string &name)
Check if the given name exist in the symbol.
Definition: codegen_cpp_visitor.cpp:1711
+
nmodl::codegen::CodegenCppVisitor::is_functor_const
bool is_functor_const(const ast::StatementBlock &variable_block, const ast::StatementBlock &functor_block)
Checks whether the functor_block generated by sympy solver modifies any variable outside its scope.
Definition: codegen_cpp_visitor.cpp:679
nmodl::ast::SolutionExpression::get_node_to_solve
std::shared_ptr< Expression > get_node_to_solve() const noexcept
Getter for member variable SolutionExpression::node_to_solve.
Definition: solution_expression.hpp:154
nmodl::stringutils::split_string
static std::vector< std::string > split_string(const std::string &text, char delimiter)
Split a text in a list of words, using a given delimiter character.
Definition: string_utils.hpp:116
nmodl::codegen::CodegenCppVisitor::get_parameter_str
static std::string get_parameter_str(const ParamVector &params)
Generate the string representing the procedure parameter declaration.
Definition: codegen_cpp_visitor.cpp:51
@@ -2034,14 +2046,14 @@
nmodl::ast::Ast::is_unit_state
virtual bool is_unit_state() const noexcept
Check if the ast node is an instance of ast::UnitState.
Definition: ast.cpp:210
nmodl::symtab::syminfo::NmodlType
NmodlType
NMODL variable properties.
Definition: symbol_properties.hpp:116
nmodl::codegen::CodegenCppVisitor::net_receive_required
bool net_receive_required() const noexcept
Check if net_receive function is required.
Definition: codegen_cpp_visitor.cpp:148
-
nmodl::codegen::naming::CORE_POINTER_SEMANTIC
static constexpr char CORE_POINTER_SEMANTIC[]
semantic type for core pointer variable
Definition: codegen_naming.hpp:126
+
nmodl::codegen::naming::CORE_POINTER_SEMANTIC
static constexpr char CORE_POINTER_SEMANTIC[]
semantic type for core pointer variable
Definition: codegen_naming.hpp:129
nmodl::ast::EigenNewtonSolverBlock::get_variable_block
std::shared_ptr< StatementBlock > get_variable_block() const noexcept
Getter for member variable EigenNewtonSolverBlock::variable_block.
Definition: eigen_newton_solver_block.hpp:194
-
nmodl::codegen::CodegenCppVisitor::visit_local_list_statement
void visit_local_list_statement(const ast::LocalListStatement &node) override
visit node of type ast::LocalListStatement
Definition: codegen_cpp_visitor.cpp:929
-
nmodl::codegen::CodegenCppVisitor::visit_protect_statement
void visit_protect_statement(const ast::ProtectStatement &node) override
visit node of type ast::ProtectStatement
Definition: codegen_cpp_visitor.cpp:1062
+
nmodl::codegen::CodegenCppVisitor::visit_local_list_statement
void visit_local_list_statement(const ast::LocalListStatement &node) override
visit node of type ast::LocalListStatement
Definition: codegen_cpp_visitor.cpp:939
+
nmodl::codegen::CodegenCppVisitor::visit_protect_statement
void visit_protect_statement(const ast::ProtectStatement &node) override
visit node of type ast::ProtectStatement
Definition: codegen_cpp_visitor.cpp:1072
nmodl::codegen::ShadowUseStatement
Represents ion write statement during code generation.
Definition: codegen_cpp_visitor.hpp:166
-
nmodl::codegen::naming::WATCH_SEMANTIC
static constexpr char WATCH_SEMANTIC[]
semantic type for watch statement
Definition: codegen_naming.hpp:135
+
nmodl::codegen::naming::WATCH_SEMANTIC
static constexpr char WATCH_SEMANTIC[]
semantic type for watch statement
Definition: codegen_naming.hpp:138
nmodl::ast::BinaryOperator
Operator used in ast::BinaryExpression.
Definition: binary_operator.hpp:38
nmodl::codegen::CodegenCppVisitor::defined_method
bool defined_method(const std::string &name) const
Check if given method is defined in this model.
Definition: codegen_cpp_visitor.cpp:163
nmodl::ast::ElseIfStatement::get_condition
std::shared_ptr< Expression > get_condition() const noexcept
Getter for member variable ElseIfStatement::condition.
Definition: else_if_statement.hpp:159
@@ -2054,61 +2066,61 @@
nmodl::codegen::BlockType
BlockType
Helper to represent various block types.
Definition: codegen_cpp_visitor.hpp:56
nmodl::ast::VarName::get_name
std::shared_ptr< Identifier > get_name() const noexcept
Getter for member variable VarName::name.
Definition: var_name.hpp:164
nmodl::ast::Program::get_symbol_table
symtab::SymbolTable * get_symbol_table() const override
Return associated symbol table for the current ast node.
Definition: program.hpp:153
-
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:162
+
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:165
nmodl::codegen::CodegenCppVisitor::breakpoint_current
std::string breakpoint_current(std::string current) const
Determine the variable name for the "current" used in breakpoint block taking into account intermedia...
Definition: codegen_cpp_visitor.cpp:362
-
nmodl::codegen::CodegenCppVisitor::visit_binary_operator
void visit_binary_operator(const ast::BinaryOperator &node) override
visit node of type ast::BinaryOperator
Definition: codegen_cpp_visitor.cpp:1016
+
nmodl::codegen::CodegenCppVisitor::visit_binary_operator
void visit_binary_operator(const ast::BinaryOperator &node) override
visit node of type ast::BinaryOperator
Definition: codegen_cpp_visitor.cpp:1026
config.h
Version information and units file path.
nmodl::ast::Ast::is_solve_block
virtual bool is_solve_block() const noexcept
Check if the ast node is an instance of ast::SolveBlock.
Definition: ast.cpp:148
-
nmodl::codegen::CodegenCppVisitor::visit_else_if_statement
void visit_else_if_statement(const ast::ElseIfStatement &node) override
visit node of type ast::ElseIfStatement
Definition: codegen_cpp_visitor.cpp:948
+
nmodl::codegen::CodegenCppVisitor::visit_else_if_statement
void visit_else_if_statement(const ast::ElseIfStatement &node) override
visit node of type ast::ElseIfStatement
Definition: codegen_cpp_visitor.cpp:958
nmodl::ast::IfStatement::get_elses
std::shared_ptr< ElseStatement > get_elses() const noexcept
Getter for member variable IfStatement::elses.
Definition: if_statement.hpp:191
nmodl::ast::BinaryExpression::get_lhs
std::shared_ptr< Expression > get_lhs() const noexcept
Getter for member variable BinaryExpression::lhs.
Definition: binary_expression.hpp:161
nmodl::ast::Ast::is_line_comment
virtual bool is_line_comment() const noexcept
Check if the ast node is an instance of ast::LineComment.
Definition: ast.cpp:284
-
nmodl::codegen::CodegenCppVisitor::compute_method_name
std::string compute_method_name(BlockType type) const
Definition: codegen_cpp_visitor.cpp:1443
-
nmodl::codegen::naming::AREA_VARIABLE
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Definition: codegen_naming.hpp:66
+
nmodl::codegen::CodegenCppVisitor::compute_method_name
std::string compute_method_name(BlockType type) const
Definition: codegen_cpp_visitor.cpp:1453
+
nmodl::codegen::naming::AREA_VARIABLE
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Definition: codegen_naming.hpp:69
nmodl::ast::Name
Represents a name.
Definition: name.hpp:44
nmodl::ast::Ast::is_while_statement
virtual bool is_while_statement() const noexcept
Check if the ast node is an instance of ast::WhileStatement.
Definition: ast.cpp:232
-
nmodl::codegen::CodegenCppVisitor::visit_program
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
Definition: codegen_cpp_visitor.cpp:1466
+
nmodl::codegen::CodegenCppVisitor::visit_program
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
Definition: codegen_cpp_visitor.cpp:1476
nmodl::ast::Ast::is_else_statement
virtual bool is_else_statement() const noexcept
Check if the ast node is an instance of ast::ElseStatement.
Definition: ast.cpp:238
nmodl::ast::FromStatement::get_statement_block
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable FromStatement::statement_block.
Definition: from_statement.hpp:213
nmodl::ast::Program
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
-
nmodl::codegen::CodegenCppVisitor::visit_indexed_name
void visit_indexed_name(const ast::IndexedName &node) override
visit node of type ast::IndexedName
Definition: codegen_cpp_visitor.cpp:919
+
nmodl::codegen::CodegenCppVisitor::visit_indexed_name
void visit_indexed_name(const ast::IndexedName &node) override
visit node of type ast::IndexedName
Definition: codegen_cpp_visitor.cpp:929
nmodl::ast::FromStatement::get_to
std::shared_ptr< Expression > get_to() const noexcept
Getter for member variable FromStatement::to.
Definition: from_statement.hpp:195
-
nmodl::codegen::naming::T_SAVE_VARIABLE
static constexpr char T_SAVE_VARIABLE[]
variable t indicating last execution time of net receive block
Definition: codegen_naming.hpp:87
-
nmodl::codegen::CodegenCppVisitor::print_prcellstate_macros
void print_prcellstate_macros() const
Print declaration of macro NRN_PRCELLSTATE for debugging.
Definition: codegen_cpp_visitor.cpp:578
-
nmodl::codegen::naming::FOR_NETCON_SEMANTIC
static constexpr char FOR_NETCON_SEMANTIC[]
semantic type for for_netcon statement
Definition: codegen_naming.hpp:138
+
nmodl::codegen::naming::T_SAVE_VARIABLE
static constexpr char T_SAVE_VARIABLE[]
variable t indicating last execution time of net receive block
Definition: codegen_naming.hpp:90
+
nmodl::codegen::CodegenCppVisitor::print_prcellstate_macros
void print_prcellstate_macros() const
Print declaration of macro NRN_PRCELLSTATE for debugging.
Definition: codegen_cpp_visitor.cpp:588
+
nmodl::codegen::naming::FOR_NETCON_SEMANTIC
static constexpr char FOR_NETCON_SEMANTIC[]
semantic type for for_netcon statement
Definition: codegen_naming.hpp:141
nmodl::ast::EigenNewtonSolverBlock::get_update_states_block
std::shared_ptr< StatementBlock > get_update_states_block() const noexcept
Getter for member variable EigenNewtonSolverBlock::update_states_block.
Definition: eigen_newton_solver_block.hpp:230
nmodl::codegen::utils::format_double_string
std::string format_double_string(const std::string &s_value)
Handles the double constants format being printed in the generated code.
- +
rename_visitor.hpp
Blindly rename given variable to new name
nmodl::codegen::BlockType::State
@ State
derivative block
nmodl::codegen::CodegenCppVisitor::nrn_state_required
bool nrn_state_required() const noexcept
Check if nrn_state function is required.
Definition: codegen_cpp_visitor.cpp:125
-
nmodl::codegen::naming::DIAM_VARIABLE
static constexpr char DIAM_VARIABLE[]
inbuilt neuron variable for diameter of the compartment
Definition: codegen_naming.hpp:60
+
nmodl::codegen::naming::DIAM_VARIABLE
static constexpr char DIAM_VARIABLE[]
inbuilt neuron variable for diameter of the compartment
Definition: codegen_naming.hpp:63
symtab_visitor.hpp
THIS FILE IS GENERATED AT BUILD TIME AND SHALL NOT BE EDITED.
nmodl::ast::Block::get_parameters
virtual const ArgumentVector & get_parameters() const
Definition: block.hpp:50
-
nmodl::codegen::CodegenCppVisitor::visit_verbatim
void visit_verbatim(const ast::Verbatim &node) override
visit node of type ast::Verbatim
Definition: codegen_cpp_visitor.cpp:1041
+
nmodl::codegen::CodegenCppVisitor::visit_verbatim
void visit_verbatim(const ast::Verbatim &node) override
visit node of type ast::Verbatim
Definition: codegen_cpp_visitor.cpp:1051
nmodl::ast::BinaryExpression
Represents binary expression in the NMODL.
Definition: binary_expression.hpp:52
-
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:150
-
nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
range variable when conductance is not used (for vectorized model)
Definition: codegen_naming.hpp:81
+
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:153
+
nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
range variable when conductance is not used (for vectorized model)
Definition: codegen_naming.hpp:84
nmodl::codegen::BlockType::Initial
@ Initial
initial block
nmodl::codegen::CodegenCppVisitor::statement_to_skip
static bool statement_to_skip(const ast::Statement &node)
Check if given statement should be skipped during code generation.
Definition: codegen_cpp_visitor.cpp:86
nmodl::codegen::CodegenCppVisitor::ion_read_statements
std::vector< std::string > ion_read_statements(BlockType type) const
For a given output block type, return statements for all read ion variables.
Definition: codegen_cpp_visitor.cpp:251
-
nmodl::codegen::CodegenCppVisitor::print_functors_definitions
void print_functors_definitions()
Print all Newton functor structs.
Definition: codegen_cpp_visitor.cpp:705
+
nmodl::codegen::CodegenCppVisitor::print_functors_definitions
void print_functors_definitions()
Print all Newton functor structs.
Definition: codegen_cpp_visitor.cpp:715
nmodl::ast::EigenNewtonSolverBlock::get_finalize_block
std::shared_ptr< StatementBlock > get_finalize_block() const noexcept
Getter for member variable EigenNewtonSolverBlock::finalize_block.
Definition: eigen_newton_solver_block.hpp:239
nmodl::codegen::CodegenCppVisitor::format_double_string
std::string format_double_string(const std::string &value)
Convert a given double value to its string representation.
Definition: codegen_cpp_visitor.cpp:200
nmodl::codegen::get_index_from_name
int get_index_from_name(const std::vector< T > &variables, const std::string &name)
Definition: codegen_cpp_visitor.hpp:181
-
nmodl::codegen::CodegenCppVisitor::print_namespace_stop
void print_namespace_stop()
Prints the end of the simulator namespace.
Definition: codegen_cpp_visitor.cpp:627
+
nmodl::codegen::CodegenCppVisitor::print_namespace_stop
void print_namespace_stop()
Prints the end of the simulator namespace.
Definition: codegen_cpp_visitor.cpp:637
nmodl::ast::Ast::get_node_name
virtual std::string get_node_name() const
Return name of of the node.
Definition: ast.cpp:28
nmodl::ast::ProtectStatement::get_expression
std::shared_ptr< Expression > get_expression() const noexcept
Getter for member variable ProtectStatement::expression.
Definition: protect_statement.hpp:157
nmodl::ast::String
Represents a string.
Definition: string.hpp:52
all.hpp
Auto generated AST classes declaration.
nmodl::ast::FromStatement::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:9196
-
nmodl::codegen::CodegenCppVisitor::visit_while_statement
void visit_while_statement(const ast::WhileStatement &node) override
visit node of type ast::WhileStatement
Definition: codegen_cpp_visitor.cpp:962
+
nmodl::codegen::CodegenCppVisitor::visit_while_statement
void visit_while_statement(const ast::WhileStatement &node) override
visit node of type ast::WhileStatement
Definition: codegen_cpp_visitor.cpp:972
nmodl::codegen::CodegenCppVisitor::ParamVector
std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
A vector of parameters represented by a 4-tuple of strings:
Definition: codegen_cpp_visitor.hpp:307
-
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:180
+
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:183
nmodl::ast::WhileStatement::get_condition
std::shared_ptr< Expression > get_condition() const noexcept
Getter for member variable WhileStatement::condition.
Definition: while_statement.hpp:159
-
nmodl::codegen::CodegenCppVisitor::visit_statement_block
void visit_statement_block(const ast::StatementBlock &node) override
Definition: codegen_cpp_visitor.cpp:1031
+
nmodl::codegen::CodegenCppVisitor::visit_statement_block
void visit_statement_block(const ast::StatementBlock &node) override
Definition: codegen_cpp_visitor.cpp:1041
nmodl::codegen::CodegenCppVisitor::print_nrn_constructor
virtual void print_nrn_constructor()=0
Print nrn_constructor function definition.
nmodl::codegen::CodegenCppVisitor::table_update_function_name
std::string table_update_function_name(const std::string &block_name) const
The name of the function that updates the table value if the parameters changed.
Definition: codegen_cpp_visitor.cpp:75
-
nmodl::codegen::CodegenCppVisitor::visit_eigen_linear_solver_block
void visit_eigen_linear_solver_block(const ast::EigenLinearSolverBlock &node) override
visit node of type ast::EigenLinearSolverBlock
Definition: codegen_cpp_visitor.cpp:1122
+
nmodl::codegen::CodegenCppVisitor::visit_eigen_linear_solver_block
void visit_eigen_linear_solver_block(const ast::EigenLinearSolverBlock &node) override
visit node of type ast::EigenLinearSolverBlock
Definition: codegen_cpp_visitor.cpp:1132
nmodl::codegen::CodegenCppVisitor::ion_variable_struct_required
bool ion_variable_struct_required() const
Check if a structure for ion variables is required.
Definition: codegen_cpp_visitor.cpp:38
nmodl::utils::is_last
bool is_last(Iter iter, const Cont &cont)
Check if the iterator is pointing to last element in the container.
Definition: common_utils.hpp:37
nmodl::codegen::get_length
int get_length(const std::shared_ptr< symtab::Symbol > &sym)
Definition: codegen_cpp_visitor.hpp:193
nmodl::codegen::CodegenCppVisitor::need_semicolon
static bool need_semicolon(const ast::Statement &node)
Check if a semicolon is required at the end of given statement.
Definition: codegen_cpp_visitor.cpp:216
-
nmodl::codegen::CodegenCppVisitor::update_index_semantics
void update_index_semantics()
populate all index semantics needed for registration with coreneuron
Definition: codegen_cpp_visitor.cpp:1152
-
nmodl::codegen::CodegenCppVisitor::print_table_replacement_function
void print_table_replacement_function(const ast::Block &)
Print replacement function for function or procedure using table.
Definition: codegen_cpp_visitor.cpp:1472
+
nmodl::codegen::CodegenCppVisitor::update_index_semantics
void update_index_semantics()
populate all index semantics needed for registration with coreneuron
Definition: codegen_cpp_visitor.cpp:1162
+
nmodl::codegen::CodegenCppVisitor::print_table_replacement_function
void print_table_replacement_function(const ast::Block &)
Print replacement function for function or procedure using table.
Definition: codegen_cpp_visitor.cpp:1482
nmodl::codegen::CodegenCppVisitor::register_mechanism_arguments
virtual std::string register_mechanism_arguments() const =0
Arguments for register_mech or point_register_mech function.
nmodl::codegen::CodegenCppVisitor::function_table_parameters
virtual std::pair< ParamVector, ParamVector > function_table_parameters(const ast::FunctionTableBlock &node)=0
Parameters of the function itself "{}" and "table_{}".
nmodl::codegen::CodegenCppVisitor::print_g_unused
virtual void print_g_unused() const =0
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
nmodl::codegen::IndexVariableInfo::is_index
bool is_index
if this is pure index (e.g.
Definition: codegen_cpp_visitor.hpp:137
nmodl::ast::Verbatim
Represents a C code block.
Definition: verbatim.hpp:38
-
nmodl::codegen::CodegenCppVisitor::visit_name
void visit_name(const ast::Name &node) override
visit node of type ast::Name
Definition: codegen_cpp_visitor.cpp:882
+
nmodl::codegen::CodegenCppVisitor::visit_name
void visit_name(const ast::Name &node) override
visit node of type ast::Name
Definition: codegen_cpp_visitor.cpp:892
nmodl::codegen::CodegenCppVisitor::has_parameter_of_name
bool has_parameter_of_name(const T &node, const std::string &name)
Check if function or procedure node has parameter with given name.
Definition: codegen_cpp_visitor.cpp:65
nmodl::codegen::CodegenCppVisitor::int_variables_size
int int_variables_size() const
Number of integer variables in the model.
Definition: codegen_cpp_visitor.cpp:186
nmodl::codegen::CodegenCppVisitor::print_sdlists_init
virtual void print_sdlists_init(bool print_initializers)=0
nmodl::codegen::CodegenCppVisitor::print_global_struct_function_table_ptrs
virtual void print_global_struct_function_table_ptrs()
Print the entries of for FUNCTION_TABLEs in the global struct.
Definition: codegen_cpp_visitor.cpp:443
-
nmodl::codegen::CodegenCppVisitor::visit_if_statement
void visit_if_statement(const ast::IfStatement &node) override
visit node of type ast::IfStatement
Definition: codegen_cpp_visitor.cpp:935
+
nmodl::codegen::CodegenCppVisitor::visit_if_statement
void visit_if_statement(const ast::IfStatement &node) override
visit node of type ast::IfStatement
Definition: codegen_cpp_visitor.cpp:945
nmodl::codegen::CppObjectSpecifier
CppObjectSpecifier
various specifiers (mostly for function codegen)
Definition: codegen_cpp_visitor.hpp:107
nmodl::codegen::MemberType::global
@ global
global variables
nmodl::codegen::CodegenCppVisitor::ion_write_statements
std::vector< ShadowUseStatement > ion_write_statements(BlockType type)
For a given output block type, return statements for writing back ion variables.
Definition: codegen_cpp_visitor.cpp:297
-
nmodl::codegen::CodegenCppVisitor::visit_else_statement
void visit_else_statement(const ast::ElseStatement &node) override
visit node of type ast::ElseStatement
Definition: codegen_cpp_visitor.cpp:956
+
nmodl::codegen::CodegenCppVisitor::visit_else_statement
void visit_else_statement(const ast::ElseStatement &node) override
visit node of type ast::ElseStatement
Definition: codegen_cpp_visitor.cpp:966
nmodl::codegen::IndexVariableInfo
Helper to represent information about index/int variables.
Definition: codegen_cpp_visitor.hpp:127
nmodl::codegen::CodegenCppVisitor::breakpoint_exist
bool breakpoint_exist() const noexcept
Check if breakpoint node exist.
Definition: codegen_cpp_visitor.cpp:143
nmodl::visitor::ConstAstVisitor
Concrete constant visitor for all AST classes.
Definition: ast_visitor.hpp:166
nmodl::codegen::CodegenCppVisitor::print_nrn_current
virtual void print_nrn_current(const ast::BreakpointBlock &node)=0
Print the nrn_current kernel.
nmodl::codegen::BlockType::Destructor
@ Destructor
destructor block
-
nmodl::codegen::naming::DEFAULT_LOCAL_VAR_TYPE
static constexpr char DEFAULT_LOCAL_VAR_TYPE[]
default local variable type
Definition: codegen_naming.hpp:111
-
nmodl::codegen::CodegenCppVisitor::print_eigen_linear_solver
void print_eigen_linear_solver(const std::string &float_type, int N)
Print linear solver using Eigen.
Definition: codegen_cpp_visitor.cpp:786
+
nmodl::codegen::naming::DEFAULT_LOCAL_VAR_TYPE
static constexpr char DEFAULT_LOCAL_VAR_TYPE[]
default local variable type
Definition: codegen_naming.hpp:114
+
nmodl::codegen::CodegenCppVisitor::print_eigen_linear_solver
void print_eigen_linear_solver(const std::string &float_type, int N)
Print linear solver using Eigen.
Definition: codegen_cpp_visitor.cpp:796
nmodl::codegen::IndexVariableInfo::symbol
const std::shared_ptr< symtab::Symbol > symbol
symbol for the variable
Definition: codegen_cpp_visitor.hpp:129
nmodl::codegen::CodegenCppVisitor::info
codegen::CodegenInfo info
All ast information for code generation.
Definition: codegen_cpp_visitor.hpp:341
nmodl::codegen::CodegenCppVisitor::print_atomic_reduction_pragma
virtual void print_atomic_reduction_pragma()=0
Print atomic update pragma for reduction statements.
@@ -1749,21 +1758,21 @@
nmodl::codegen::MemberType::thread
@ thread
thread variables
nmodl::codegen::CodegenCppVisitor::optimize_ion_variable_copies
virtual bool optimize_ion_variable_copies() const =0
Check if ion variable copies should be avoided.
-
nmodl::codegen::CodegenCppVisitor::print_procedure
void print_procedure(const ast::ProcedureBlock &node)
Print NMODL procedure in target backend code.
Definition: codegen_cpp_visitor.cpp:528
+
nmodl::codegen::CodegenCppVisitor::print_procedure
void print_procedure(const ast::ProcedureBlock &node)
Print NMODL procedure in target backend code.
Definition: codegen_cpp_visitor.cpp:538
nmodl::codegen::CodegenCppVisitor::nmodl_version
std::string nmodl_version() const noexcept
Return Nmodl language version.
Definition: codegen_cpp_visitor.hpp:413
nmodl::codegen::CodegenCppVisitor::printing_top_verbatim_blocks
bool printing_top_verbatim_blocks
true if currently printing top level verbatim blocks
Definition: codegen_cpp_visitor.hpp:390
nmodl::codegen::CodegenCppVisitor::float_variables_size
int float_variables_size() const
Number of float variables in the model.
Definition: codegen_cpp_visitor.cpp:176
nmodl::codegen::IndexVariableInfo::is_constant
bool is_constant
if the variable is qualified as constant (this is property of IndexVariable)
Definition: codegen_cpp_visitor.hpp:144
nmodl::codegen::CodegenCppVisitor::print_backend_info
void print_backend_info()
Print top file header printed in generated code.
Definition: codegen_cpp_visitor.cpp:423
-
nmodl::codegen::CodegenCppVisitor::visit_from_statement
void visit_from_statement(const ast::FromStatement &node) override
visit node of type ast::FromStatement
Definition: codegen_cpp_visitor.cpp:970
-
nmodl::codegen::CodegenCppVisitor::print_functor_definition
void print_functor_definition(const ast::EigenNewtonSolverBlock &node)
Based on the EigenNewtonSolverBlock passed print the definition needed for its functor.
Definition: codegen_cpp_visitor.cpp:712
+
nmodl::codegen::CodegenCppVisitor::visit_from_statement
void visit_from_statement(const ast::FromStatement &node) override
visit node of type ast::FromStatement
Definition: codegen_cpp_visitor.cpp:980
+
nmodl::codegen::CodegenCppVisitor::print_functor_definition
void print_functor_definition(const ast::EigenNewtonSolverBlock &node)
Based on the EigenNewtonSolverBlock passed print the definition needed for its functor.
Definition: codegen_cpp_visitor.cpp:722
nmodl::codegen::CodegenCppVisitor::print_global_var_struct_assertions
virtual void print_global_var_struct_assertions() const
Print static assertions about the global variable struct.
Definition: codegen_cpp_visitor.cpp:451
nmodl::codegen::CodegenCppVisitor::printing_net_init
bool printing_net_init
true if currently initial block of net_receive being printed
Definition: codegen_cpp_visitor.hpp:384
-
nmodl::codegen::CodegenCppVisitor::print_mechanism_info
void print_mechanism_info()
Print backend code for byte array that has mechanism information (to be registered with NEURON/CoreNE...
Definition: codegen_cpp_visitor.cpp:585
-
nmodl::codegen::CodegenCppVisitor::visit_eigen_newton_solver_block
void visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock &node) override
visit node of type ast::EigenNewtonSolverBlock
Definition: codegen_cpp_visitor.cpp:1093
+
nmodl::codegen::CodegenCppVisitor::print_mechanism_info
void print_mechanism_info()
Print backend code for byte array that has mechanism information (to be registered with NEURON/CoreNE...
Definition: codegen_cpp_visitor.cpp:595
+
nmodl::codegen::CodegenCppVisitor::visit_eigen_newton_solver_block
void visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock &node) override
visit node of type ast::EigenNewtonSolverBlock
Definition: codegen_cpp_visitor.cpp:1103
nmodl::codegen::CodegenCppVisitor::print_global_function_common_code
virtual void print_global_function_common_code(BlockType type, const std::string &function_name="")=0
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
nmodl::codegen::CodegenCppVisitor::print_standard_includes
virtual void print_standard_includes()=0
Print standard C/C++ includes.
-
nmodl::codegen::CodegenCppVisitor::visit_prime_name
void visit_prime_name(const ast::PrimeName &node) override
visit node of type ast::PrimeName
Definition: codegen_cpp_visitor.cpp:892
+
nmodl::codegen::CodegenCppVisitor::visit_prime_name
void visit_prime_name(const ast::PrimeName &node) override
visit node of type ast::PrimeName
Definition: codegen_cpp_visitor.cpp:902
nmodl::codegen::CodegenCppVisitor::print_nrn_cur_non_conductance_kernel
virtual void print_nrn_cur_non_conductance_kernel()=0
Print the nrn_cur kernel without NMODL conductance keyword provisions.
nmodl::codegen::CppObjectSpecifier::Friend
@ Friend
nmodl::codegen::CodegenCppVisitor::print_function_procedure_helper
virtual void print_function_procedure_helper(const ast::Block &node)=0
Common helper function to help printing function or procedure blocks.
@@ -1778,47 +1787,47 @@
nmodl::codegen::CodegenCppVisitor::nrn_thread_arguments
virtual std::string nrn_thread_arguments() const =0
Arguments for "_threadargs_" macro in neuron implementation.
nmodl::codegen::CodegenCppVisitor::range_variable_setup_required
bool range_variable_setup_required() const noexcept
Check if setup_range_variable function is required.
Definition: codegen_cpp_visitor.cpp:157
nmodl::ast::MutexLock
Represent MUTEXLOCK statement in NMODL.
Definition: mutex_lock.hpp:38
-
nmodl::codegen::CodegenCppVisitor::print_statement_block
void print_statement_block(const ast::StatementBlock &node, bool open_brace=true, bool close_brace=true)
Print any statement block in nmodl with option to (not) print braces.
Definition: codegen_cpp_visitor.cpp:637
+
nmodl::codegen::CodegenCppVisitor::print_statement_block
void print_statement_block(const ast::StatementBlock &node, bool open_brace=true, bool close_brace=true)
Print any statement block in nmodl with option to (not) print braces.
Definition: codegen_cpp_visitor.cpp:647
nmodl::codegen::get_prefixsum_from_name
int get_prefixsum_from_name(const std::vector< T > &variables, const std::string &name)
Definition: codegen_cpp_visitor.hpp:202
nmodl::codegen::CodegenCppVisitor::global_variable_name
virtual std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const =0
Determine the variable name for a global variable given its symbol.
nmodl::ast::TableStatement
Represents TABLE statement in NMODL.
Definition: table_statement.hpp:39
-
nmodl::codegen::CodegenCppVisitor::visit_binary_expression
void visit_binary_expression(const ast::BinaryExpression &node) override
visit node of type ast::BinaryExpression
Definition: codegen_cpp_visitor.cpp:998
+
nmodl::codegen::CodegenCppVisitor::visit_binary_expression
void visit_binary_expression(const ast::BinaryExpression &node) override
visit node of type ast::BinaryExpression
Definition: codegen_cpp_visitor.cpp:1008
nmodl::ast::VarName
Represents a variable.
Definition: var_name.hpp:43
nmodl::ast::Integer
Represents an integer variable.
Definition: integer.hpp:49
nmodl::codegen::BlockType::BlockTypeEnd
@ BlockTypeEnd
fake ending block type for loops on the enums. Keep it at the end
-
nmodl::codegen::CodegenCppVisitor::get_object_specifiers
std::string get_object_specifiers(const std::unordered_set< CppObjectSpecifier > &)
Definition: codegen_cpp_visitor.cpp:1676
-
nmodl::codegen::CodegenCppVisitor::get_float_variables
std::vector< SymbolType > get_float_variables() const
Determine all float variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1228
+
nmodl::codegen::CodegenCppVisitor::get_object_specifiers
std::string get_object_specifiers(const std::unordered_set< CppObjectSpecifier > &)
Definition: codegen_cpp_visitor.cpp:1686
+
nmodl::codegen::CodegenCppVisitor::get_float_variables
std::vector< SymbolType > get_float_variables() const
Determine all float variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1238
nmodl::codegen::CodegenCppVisitor::print_net_move_call
virtual void print_net_move_call(const ast::FunctionCall &node)=0
Print call to net_move.
nmodl::codegen::CodegenCppVisitor::default_int_data_type
const char * default_int_data_type() const noexcept
Default data type for integer (offset) elements.
Definition: codegen_cpp_visitor.hpp:500
nmodl::codegen::CodegenInfo::mod_suffix
std::string mod_suffix
name of the suffix
Definition: codegen_info.hpp:302
-
nmodl::codegen::CodegenCppVisitor::print_function_tables
void print_function_tables(const ast::FunctionTableBlock &node)
Print the internal function for FUNCTION_TABLES.
Definition: codegen_cpp_visitor.cpp:553
+
nmodl::codegen::CodegenCppVisitor::print_function_tables
void print_function_tables(const ast::FunctionTableBlock &node)
Print the internal function for FUNCTION_TABLES.
Definition: codegen_cpp_visitor.cpp:563
nmodl::codegen::CodegenInfo
Represent information collected from AST for code generation.
Definition: codegen_info.hpp:297
-
nmodl::codegen::CodegenCppVisitor::visit_paren_expression
void visit_paren_expression(const ast::ParenExpression &node) override
visit node of type ast::ParenExpression
Definition: codegen_cpp_visitor.cpp:991
-
nmodl::codegen::CodegenCppVisitor::print_namespace_start
void print_namespace_start()
Prints the start of the simulator namespace.
Definition: codegen_cpp_visitor.cpp:621
+
nmodl::codegen::CodegenCppVisitor::visit_paren_expression
void visit_paren_expression(const ast::ParenExpression &node) override
visit node of type ast::ParenExpression
Definition: codegen_cpp_visitor.cpp:1001
+
nmodl::codegen::CodegenCppVisitor::print_namespace_start
void print_namespace_start()
Prints the start of the simulator namespace.
Definition: codegen_cpp_visitor.cpp:631
nmodl::codegen::CodegenCppVisitor::default_float_data_type
const char * default_float_data_type() const noexcept
Default data type for floating point elements.
Definition: codegen_cpp_visitor.hpp:484
nmodl::codegen::CodegenCppVisitor::net_receive_buffering_required
bool net_receive_buffering_required() const noexcept
Check if net receive/send buffering kernels required.
Definition: codegen_cpp_visitor.cpp:120
nmodl::codegen::CodegenCppVisitor::update_if_ion_variable_name
std::string update_if_ion_variable_name(const std::string &name) const
Determine the updated name if the ion variable has been optimized.
Definition: codegen_cpp_visitor.cpp:384
-
nmodl::codegen::CodegenCppVisitor::print_function
void print_function(const ast::FunctionBlock &node)
Print NMODL function in target backend code.
Definition: codegen_cpp_visitor.cpp:533
+
nmodl::codegen::CodegenCppVisitor::print_function
void print_function(const ast::FunctionBlock &node)
Print NMODL function in target backend code.
Definition: codegen_cpp_visitor.cpp:543
nmodl::codegen::CodegenCppVisitor::print_nrn_cur_conductance_kernel
virtual void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node)=0
Print the nrn_cur kernel with NMODL conductance keyword provisions.
-
nmodl::codegen::CodegenCppVisitor::visit_mutex_unlock
void visit_mutex_unlock(const ast::MutexUnlock &node) override
visit node of type ast::MutexUnlock
Definition: codegen_cpp_visitor.cpp:1077
+
nmodl::codegen::CodegenCppVisitor::visit_mutex_unlock
void visit_mutex_unlock(const ast::MutexUnlock &node) override
visit node of type ast::MutexUnlock
Definition: codegen_cpp_visitor.cpp:1087
nmodl::codegen::IndexVariableInfo::is_integer
bool is_integer
if this is an integer (e.g.
Definition: codegen_cpp_visitor.hpp:141
nmodl::codegen::CodegenCppVisitor::int_variable_name
virtual std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const =0
Determine the name of an int variable given its symbol.
-
nmodl::codegen::CodegenCppVisitor::visit_unit
void visit_unit(const ast::Unit &node) override
visit node of type ast::Unit
Definition: codegen_cpp_visitor.cpp:887
-
nmodl::codegen::CodegenCppVisitor::object_specifier_map
std::unordered_map< CppObjectSpecifier, std::string > object_specifier_map
Definition: codegen_cpp_visitor.hpp:1419
+
nmodl::codegen::CodegenCppVisitor::visit_unit
void visit_unit(const ast::Unit &node) override
visit node of type ast::Unit
Definition: codegen_cpp_visitor.cpp:897
+
nmodl::codegen::CodegenCppVisitor::object_specifier_map
std::unordered_map< CppObjectSpecifier, std::string > object_specifier_map
Definition: codegen_cpp_visitor.hpp:1428
nmodl::ast::EigenNewtonSolverBlock
Represent newton solver solution block based on Eigen.
Definition: eigen_newton_solver_block.hpp:38
-
nmodl::codegen::CodegenCppVisitor::visit_update_dt
void visit_update_dt(const ast::UpdateDt &node) override
visit node of type ast::UpdateDt
Definition: codegen_cpp_visitor.cpp:1057
-
nmodl::codegen::CodegenCppVisitor::print_vector_elements
void print_vector_elements(const std::vector< T > &elements, const std::string &separator, const std::string &prefix="")
Print the items in a vector as a list.
Definition: codegen_cpp_visitor.hpp:1549
+
nmodl::codegen::CodegenCppVisitor::visit_update_dt
void visit_update_dt(const ast::UpdateDt &node) override
visit node of type ast::UpdateDt
Definition: codegen_cpp_visitor.cpp:1067
+
nmodl::codegen::CodegenCppVisitor::print_vector_elements
void print_vector_elements(const std::vector< T > &elements, const std::string &separator, const std::string &prefix="")
Print the items in a vector as a list.
Definition: codegen_cpp_visitor.hpp:1558
nmodl::codegen::CodegenCppVisitor::is_function_table_call
bool is_function_table_call(const std::string &name) const
Definition: codegen_cpp_visitor.cpp:169
nmodl::codegen::IndexVariableInfo::IndexVariableInfo
IndexVariableInfo(std::shared_ptr< symtab::Symbol > symbol, bool is_vdata=false, bool is_index=false, bool is_integer=false)
Definition: codegen_cpp_visitor.hpp:146
nmodl::codegen::CodegenCppVisitor::add_variable_point_process
virtual void add_variable_point_process(std::vector< IndexVariableInfo > &variables)=0
Add the variable point_process during get_int_variables.
-
nmodl::codegen::naming::DEFAULT_FLOAT_TYPE
static constexpr char DEFAULT_FLOAT_TYPE[]
default float variable type
Definition: codegen_naming.hpp:108
-
nmodl::codegen::CodegenCppVisitor::get_int_variables
std::vector< IndexVariableInfo > get_int_variables()
Determine all int variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1304
+
nmodl::codegen::naming::DEFAULT_FLOAT_TYPE
static constexpr char DEFAULT_FLOAT_TYPE[]
default float variable type
Definition: codegen_naming.hpp:111
+
nmodl::codegen::CodegenCppVisitor::get_int_variables
std::vector< IndexVariableInfo > get_int_variables()
Determine all int variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1314
codegen_naming.hpp
nmodl::codegen::CodegenCppVisitor::nrn_thread_internal_arguments
virtual std::string nrn_thread_internal_arguments()=0
Arguments for "_threadargs_" macro in neuron implementation.
-
nmodl::codegen::CodegenCppVisitor::visit_function_call
void visit_function_call(const ast::FunctionCall &node) override
visit node of type ast::FunctionCall
Definition: codegen_cpp_visitor.cpp:1036
+
nmodl::codegen::CodegenCppVisitor::visit_function_call
void visit_function_call(const ast::FunctionCall &node) override
visit node of type ast::FunctionCall
Definition: codegen_cpp_visitor.cpp:1046
nmodl::ast::Block
Base class for all block scoped nodes.
Definition: block.hpp:41
nmodl::codegen::CodegenCppVisitor::external_method_parameters
virtual const ParamVector external_method_parameters(bool table=false) noexcept=0
Parameters for functions in generated code that are called back from external code.
nmodl::codegen::CodegenCppVisitor::position_of_int_var
virtual int position_of_int_var(const std::string &name) const =0
Determine the position in the data array for a given int variable.
@@ -1827,7 +1836,7 @@
nmodl::codegen::BlockType::Equation
@ Equation
breakpoint block
nmodl::codegen::MemberType
MemberType
Helper to represent various variables types.
Definition: codegen_cpp_visitor.hpp:91
nmodl::codegen::CodegenCppVisitor::external_method_arguments
virtual const std::string external_method_arguments() noexcept=0
Arguments for external functions called from generated code.
-
nmodl::codegen::CodegenCppVisitor::is_net_move
bool is_net_move(const std::string &name) const noexcept
Checks if given function name is net_move.
Definition: codegen_cpp_visitor.hpp:656
+
nmodl::codegen::CodegenCppVisitor::is_net_move
bool is_net_move(const std::string &name) const noexcept
Checks if given function name is net_move.
Definition: codegen_cpp_visitor.hpp:660
nmodl::ast::Float
Represents a float variable.
Definition: float.hpp:44
nmodl::codegen::CodegenCppVisitor::print_mechanism_global_var_structure
virtual void print_mechanism_global_var_structure(bool print_initializers)=0
Print the structure that wraps all global variables used in the NMODL.
nmodl::ast::BreakpointBlock
Represents a BREAKPOINT block in NMODL.
Definition: breakpoint_block.hpp:53
@@ -1837,11 +1846,11 @@
nmodl::codegen::CodegenCppVisitor::add_variable_tqitem
virtual void add_variable_tqitem(std::vector< IndexVariableInfo > &variables)=0
Add the variable tqitem during get_int_variables.
nmodl::codegen::CodegenCppVisitor::simulator_name
virtual std::string simulator_name()=0
Name of the simulator the code was generated for.
-
nmodl::codegen::CodegenCppVisitor::setup
void setup(const ast::Program &node)
Setup the target backend code generator.
Definition: codegen_cpp_visitor.cpp:1418
-
nmodl::codegen::CodegenCppVisitor::visit_unary_operator
void visit_unary_operator(const ast::UnaryOperator &node) override
visit node of type ast::UnaryOperator
Definition: codegen_cpp_visitor.cpp:1021
-
nmodl::codegen::CodegenCppVisitor::visit_mutex_lock
void visit_mutex_lock(const ast::MutexLock &node) override
visit node of type ast::MutexLock
Definition: codegen_cpp_visitor.cpp:1070
+
nmodl::codegen::CodegenCppVisitor::setup
void setup(const ast::Program &node)
Setup the target backend code generator.
Definition: codegen_cpp_visitor.cpp:1428
+
nmodl::codegen::CodegenCppVisitor::visit_unary_operator
void visit_unary_operator(const ast::UnaryOperator &node) override
visit node of type ast::UnaryOperator
Definition: codegen_cpp_visitor.cpp:1031
+
nmodl::codegen::CodegenCppVisitor::visit_mutex_lock
void visit_mutex_lock(const ast::MutexLock &node) override
visit node of type ast::MutexLock
Definition: codegen_cpp_visitor.cpp:1080
nmodl::codegen::CodegenCppVisitor::print_net_event_call
virtual void print_net_event_call(const ast::FunctionCall &node)=0
Print call to net_event.
-
nmodl::codegen::CodegenCppVisitor::visit_boolean
void visit_boolean(const ast::Boolean &node) override
visit node of type ast::Boolean
Definition: codegen_cpp_visitor.cpp:877
+
nmodl::codegen::CodegenCppVisitor::visit_boolean
void visit_boolean(const ast::Boolean &node) override
visit node of type ast::Boolean
Definition: codegen_cpp_visitor.cpp:887
nmodl::codegen::CodegenCppVisitor::nrn_cur_required
bool nrn_cur_required() const noexcept
Check if nrn_cur function is required.
Definition: codegen_cpp_visitor.cpp:133
nmodl::codegen::CodegenCppVisitor::ion_read_statements_optimized
std::vector< std::string > ion_read_statements_optimized(BlockType type) const
For a given output block type, return minimal statements for all read ion variables.
Definition: codegen_cpp_visitor.cpp:281
@@ -1852,24 +1861,25 @@
nmodl::codegen::CodegenCppVisitor::print_codegen_routines
virtual void print_codegen_routines()=0
Print entry point to code generation.
nmodl::ast::MutexUnlock
Represent MUTEXUNLOCK statement in NMODL.
Definition: mutex_unlock.hpp:38
code_printer.hpp
Helper class for printing C/C++ code.
-
nmodl::codegen::CodegenCppVisitor::visit_double
void visit_double(const ast::Double &node) override
visit node of type ast::Double
Definition: codegen_cpp_visitor.cpp:872
-
nmodl::codegen::CodegenCppVisitor::print_using_namespace
void print_using_namespace()
Prints f"using namespace {namespace_name()}".
Definition: codegen_cpp_visitor.cpp:617
+
nmodl::codegen::CodegenCppVisitor::visit_double
void visit_double(const ast::Double &node) override
visit node of type ast::Double
Definition: codegen_cpp_visitor.cpp:882
+
nmodl::codegen::CodegenCppVisitor::print_using_namespace
void print_using_namespace()
Prints f"using namespace {namespace_name()}".
Definition: codegen_cpp_visitor.cpp:627
nmodl::codegen::CodegenCppVisitor::net_send_buffer_required
bool net_send_buffer_required() const noexcept
Check if net_send_buffer is required.
Definition: codegen_cpp_visitor.cpp:110
nmodl::codegen::naming::NMODL_VERSION
static constexpr char NMODL_VERSION[]
nmodl language version
Definition: codegen_naming.hpp:21
nmodl::codegen::CodegenCppVisitor::codegen_int_variables
std::vector< IndexVariableInfo > codegen_int_variables
All int variables for the model.
Definition: codegen_cpp_visitor.hpp:359
-
nmodl::codegen::CodegenCppVisitor::visit_float
void visit_float(const ast::Float &node) override
visit node of type ast::Float
Definition: codegen_cpp_visitor.cpp:867
-
nmodl::codegen::CodegenCppVisitor::visit_string
void visit_string(const ast::String &node) override
visit node of type ast::String
Definition: codegen_cpp_visitor.cpp:852
+
nmodl::codegen::CodegenCppVisitor::visit_float
void visit_float(const ast::Float &node) override
visit node of type ast::Float
Definition: codegen_cpp_visitor.cpp:877
+
nmodl::codegen::CodegenCppVisitor::visit_string
void visit_string(const ast::String &node) override
visit node of type ast::String
Definition: codegen_cpp_visitor.cpp:862
nmodl::codegen::BlockType::Watch
@ Watch
watch block
nmodl::codegen::BlockType::NetReceive
@ NetReceive
net_receive block
-
nmodl::codegen::CodegenCppVisitor::visit_solution_expression
void visit_solution_expression(const ast::SolutionExpression &node) override
visit node of type ast::SolutionExpression
Definition: codegen_cpp_visitor.cpp:1082
+
nmodl::codegen::CodegenCppVisitor::visit_solution_expression
void visit_solution_expression(const ast::SolutionExpression &node) override
visit node of type ast::SolutionExpression
Definition: codegen_cpp_visitor.cpp:1092
+
nmodl::codegen::CodegenCppVisitor::print_nrn_pointing
virtual void print_nrn_pointing(const ast::FunctionCall &node)
Print nrn_pointing.
Definition: codegen_cpp_visitor.cpp:532
nmodl::codegen::CodegenCppVisitor::local_var_type
const char * local_var_type() const noexcept
Data type for the local variables.
Definition: codegen_cpp_visitor.hpp:468
nmodl::codegen::CodegenCppVisitor::print_global_var_struct_decl
virtual void print_global_var_struct_decl()
Instantiate global var instance.
Definition: codegen_cpp_visitor.cpp:464
nmodl::codegen::CodegenCppVisitor::get_channel_info_var_name
std::string get_channel_info_var_name() const noexcept
Name of channel info variable.
Definition: codegen_cpp_visitor.hpp:524
-
nmodl::codegen::CodegenCppVisitor::visit_var_name
void visit_var_name(const ast::VarName &node) override
Definition: codegen_cpp_visitor.cpp:900
+
nmodl::codegen::CodegenCppVisitor::visit_var_name
void visit_var_name(const ast::VarName &node) override
Definition: codegen_cpp_visitor.cpp:910
nmodl::codegen::CodegenCppVisitor::print_function_table_call
virtual void print_function_table_call(const ast::FunctionCall &node)=0
Print special code when calling FUNCTION_TABLEs.
nmodl::codegen::CppObjectSpecifier::Extern
@ Extern
-
nmodl::codegen::CodegenCppVisitor::print_nmodl_constants
void print_nmodl_constants()
Print the nmodl constants used in backend code.
Definition: codegen_cpp_visitor.cpp:832
-
nmodl::codegen::CodegenCppVisitor::print_table_check_function
void print_table_check_function(const ast::Block &)
Print check_function() for functions or procedure using table.
Definition: codegen_cpp_visitor.cpp:1581
+
nmodl::codegen::CodegenCppVisitor::print_nmodl_constants
void print_nmodl_constants()
Print the nmodl constants used in backend code.
Definition: codegen_cpp_visitor.cpp:842
+
nmodl::codegen::CodegenCppVisitor::print_table_check_function
void print_table_check_function(const ast::Block &)
Print check_function() for functions or procedure using table.
Definition: codegen_cpp_visitor.cpp:1591
nmodl::ast::PrimeName
Represents a prime variable (for ODE)
Definition: prime_name.hpp:48
nmodl::codegen::CodegenCppVisitor::read_ion_variable_name
static std::pair< std::string, std::string > read_ion_variable_name(const std::string &name)
Return ion variable name and corresponding ion read variable name.
Definition: codegen_cpp_visitor.cpp:401
nmodl::codegen::CodegenCppVisitor::get_arg_str
static std::string get_arg_str(const ParamVector &params)
Generate the string representing the parameters in a function call.
Definition: codegen_cpp_visitor.cpp:42
@@ -1877,21 +1887,22 @@
codegen_info.hpp
Various types to store code generation specific information.
nmodl::ast::Boolean
Represents a boolean variable.
Definition: boolean.hpp:42
-
nmodl::codegen::naming::DEFAULT_INTEGER_TYPE
static constexpr char DEFAULT_INTEGER_TYPE[]
default integer variable type
Definition: codegen_naming.hpp:114
+
nmodl::codegen::naming::DEFAULT_INTEGER_TYPE
static constexpr char DEFAULT_INTEGER_TYPE[]
default integer variable type
Definition: codegen_naming.hpp:117
nmodl::codegen::CodegenCppVisitor::print_function_or_procedure
virtual void print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers)=0
Print nmodl function or procedure (common code)
nmodl::symtab::SymbolTable
Represent symbol table for a NMODL block.
Definition: symbol_table.hpp:57
-
nmodl::codegen::CodegenCppVisitor::visit_integer
void visit_integer(const ast::Integer &node) override
visit node of type ast::Integer
Definition: codegen_cpp_visitor.cpp:861
+
nmodl::codegen::CodegenCppVisitor::is_nrn_pointing
bool is_nrn_pointing(const std::string &name) const noexcept
Definition: codegen_cpp_visitor.hpp:650
+
nmodl::codegen::CodegenCppVisitor::visit_integer
void visit_integer(const ast::Integer &node) override
visit node of type ast::Integer
Definition: codegen_cpp_visitor.cpp:871
nmodl::ast::EigenLinearSolverBlock
Represent linear solver solution block based on Eigen.
Definition: eigen_linear_solver_block.hpp:38
nmodl::codegen::CodegenCppVisitor::printing_net_receive
bool printing_net_receive
true if currently net_receive block being printed
Definition: codegen_cpp_visitor.hpp:378
nmodl::codegen::CodegenCppVisitor::process_verbatim_text
virtual std::string process_verbatim_text(std::string const &text)=0
Process a verbatim block for possible variable renaming.
nmodl::ast::UpdateDt
Statement to indicate a change in timestep in a given block.
Definition: update_dt.hpp:38
-
nmodl::codegen::CodegenCppVisitor::get_table_statement
const ast::TableStatement * get_table_statement(const ast::Block &)
Definition: codegen_cpp_visitor.cpp:1688
+
nmodl::codegen::CodegenCppVisitor::get_table_statement
const ast::TableStatement * get_table_statement(const ast::Block &)
Definition: codegen_cpp_visitor.cpp:1698
nmodl::codegen::CodegenCppVisitor::print_global_variables_for_hoc
virtual void print_global_variables_for_hoc()=0
Print byte arrays that register scalar and vector variables for hoc interface.
nmodl::codegen::CppObjectSpecifier::ThreadLocal
@ ThreadLocal
nmodl::codegen::CodegenCppVisitor::format_float_string
std::string format_float_string(const std::string &value)
Convert a given float value to its string representation.
Definition: codegen_cpp_visitor.cpp:205
-
nmodl::codegen::CodegenCppVisitor::check_if_var_is_array
std::tuple< bool, int > check_if_var_is_array(const std::string &name)
Check if the given name exist in the symbol.
Definition: codegen_cpp_visitor.cpp:1701
-
nmodl::codegen::CodegenCppVisitor::is_functor_const
bool is_functor_const(const ast::StatementBlock &variable_block, const ast::StatementBlock &functor_block)
Checks whether the functor_block generated by sympy solver modifies any variable outside its scope.
Definition: codegen_cpp_visitor.cpp:669
+
nmodl::codegen::CodegenCppVisitor::check_if_var_is_array
std::tuple< bool, int > check_if_var_is_array(const std::string &name)
Check if the given name exist in the symbol.
Definition: codegen_cpp_visitor.cpp:1711
+
nmodl::codegen::CodegenCppVisitor::is_functor_const
bool is_functor_const(const ast::StatementBlock &variable_block, const ast::StatementBlock &functor_block)
Checks whether the functor_block generated by sympy solver modifies any variable outside its scope.
Definition: codegen_cpp_visitor.cpp:679
nmodl::codegen::CppObjectSpecifier::Inline
@ Inline
nmodl::codegen::CodegenCppVisitor::get_parameter_str
static std::string get_parameter_str(const ParamVector &params)
Generate the string representing the procedure parameter declaration.
Definition: codegen_cpp_visitor.cpp:51
nmodl::codegen::CodegenCppVisitor::print_nrn_cur
virtual void print_nrn_cur()=0
Print nrn_cur / current update function definition.
@@ -1907,12 +1918,12 @@
nmodl::codegen::CodegenInfo::electrode_current
bool electrode_current
if electrode current specified
Definition: codegen_info.hpp:324
nmodl::codegen::CodegenCppVisitor::internal_method_parameters
virtual ParamVector internal_method_parameters()=0
Parameters for internally defined functions.
nmodl::codegen::CodegenCppVisitor::print_nrn_destructor
virtual void print_nrn_destructor()=0
Print nrn_destructor function definition.
-
nmodl::codegen::CodegenCppVisitor::visit_local_list_statement
void visit_local_list_statement(const ast::LocalListStatement &node) override
visit node of type ast::LocalListStatement
Definition: codegen_cpp_visitor.cpp:929
-
nmodl::codegen::CodegenCppVisitor::visit_protect_statement
void visit_protect_statement(const ast::ProtectStatement &node) override
visit node of type ast::ProtectStatement
Definition: codegen_cpp_visitor.cpp:1062
+
nmodl::codegen::CodegenCppVisitor::visit_local_list_statement
void visit_local_list_statement(const ast::LocalListStatement &node) override
visit node of type ast::LocalListStatement
Definition: codegen_cpp_visitor.cpp:939
+
nmodl::codegen::CodegenCppVisitor::visit_protect_statement
void visit_protect_statement(const ast::ProtectStatement &node) override
visit node of type ast::ProtectStatement
Definition: codegen_cpp_visitor.cpp:1072
nmodl::codegen::ShadowUseStatement
Represents ion write statement during code generation.
Definition: codegen_cpp_visitor.hpp:166
nmodl::codegen::CodegenCppVisitor::print_mechanism_range_var_structure
virtual void print_mechanism_range_var_structure(bool print_initializers)=0
Print the structure that wraps all range and int variables required for the NMODL.
-
nmodl::codegen::CodegenCppVisitor::make_symbol
SymbolType make_symbol(const std::string &name) const
Creates a temporary symbol.
Definition: codegen_cpp_visitor.hpp:1072
+
nmodl::codegen::CodegenCppVisitor::make_symbol
SymbolType make_symbol(const std::string &name) const
Creates a temporary symbol.
Definition: codegen_cpp_visitor.hpp:1081
nmodl::codegen::CodegenCppVisitor::float_type
std::string float_type
Data type of floating point variables.
Definition: codegen_cpp_visitor.hpp:329
nmodl::ast::BinaryOperator
Operator used in ast::BinaryExpression.
Definition: binary_operator.hpp:38
nmodl::codegen::CodegenCppVisitor::defined_method
bool defined_method(const std::string &name) const
Check if given method is defined in this model.
Definition: codegen_cpp_visitor.cpp:163
@@ -1929,36 +1940,37 @@
nmodl::codegen::CodegenCppVisitor::current_watch_statement
int current_watch_statement
Index of watch statement being printed.
Definition: codegen_cpp_visitor.hpp:402
nmodl::codegen::naming::NET_EVENT_METHOD
static constexpr char NET_EVENT_METHOD[]
net_event function call in nmodl
Definition: codegen_naming.hpp:45
nmodl::codegen::CodegenCppVisitor::print_fast_imem_calculation
virtual void print_fast_imem_calculation()=0
Print fast membrane current calculation code.
+
nmodl::codegen::naming::NRN_POINTING_METHOD
static constexpr char NRN_POINTING_METHOD[]
nrn_pointing function in nmodl
Definition: codegen_naming.hpp:54
nmodl::codegen::CodegenCppVisitor::print_mechanism_register
virtual void print_mechanism_register()=0
Print the mechanism registration function.
nmodl::codegen::CodegenCppVisitor::breakpoint_current
std::string breakpoint_current(std::string current) const
Determine the variable name for the "current" used in breakpoint block taking into account intermedia...
Definition: codegen_cpp_visitor.cpp:362
-
nmodl::codegen::CodegenCppVisitor::visit_binary_operator
void visit_binary_operator(const ast::BinaryOperator &node) override
visit node of type ast::BinaryOperator
Definition: codegen_cpp_visitor.cpp:1016
-
nmodl::codegen::CodegenCppVisitor::visit_else_if_statement
void visit_else_if_statement(const ast::ElseIfStatement &node) override
visit node of type ast::ElseIfStatement
Definition: codegen_cpp_visitor.cpp:948
+
nmodl::codegen::CodegenCppVisitor::visit_binary_operator
void visit_binary_operator(const ast::BinaryOperator &node) override
visit node of type ast::BinaryOperator
Definition: codegen_cpp_visitor.cpp:1026
+
nmodl::codegen::CodegenCppVisitor::visit_else_if_statement
void visit_else_if_statement(const ast::ElseIfStatement &node) override
visit node of type ast::ElseIfStatement
Definition: codegen_cpp_visitor.cpp:958
nmodl::codegen::CppObjectSpecifier::Volatile
@ Volatile
nmodl::codegen::CppObjectSpecifier::ExternC
@ ExternC
nmodl::codegen::CodegenCppVisitor
Visitor for printing C++ code compatible with legacy api of CoreNEURON
Definition: codegen_cpp_visitor.hpp:237
nmodl::codegen::CodegenCppVisitor::CodegenCppVisitor
CodegenCppVisitor(std::string mod_filename, std::ostream &stream, std::string float_type, const bool optimize_ionvar_copies, std::unique_ptr< nmodl::utils::Blame > blame=nullptr)
Constructs the C++ code generator visitor.
Definition: codegen_cpp_visitor.hpp:283
nmodl::codegen::CodegenCppVisitor::instance_struct
std::string instance_struct() const
Name of structure that wraps range variables.
Definition: codegen_cpp_visitor.hpp:427
-
nmodl::codegen::CodegenCppVisitor::compute_method_name
std::string compute_method_name(BlockType type) const
Definition: codegen_cpp_visitor.cpp:1443
+
nmodl::codegen::CodegenCppVisitor::compute_method_name
std::string compute_method_name(BlockType type) const
Definition: codegen_cpp_visitor.cpp:1453
nmodl::ast::Name
Represents a name.
Definition: name.hpp:44
-
nmodl::codegen::CodegenCppVisitor::visit_program
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
Definition: codegen_cpp_visitor.cpp:1466
+
nmodl::codegen::CodegenCppVisitor::visit_program
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
Definition: codegen_cpp_visitor.cpp:1476
nmodl::codegen::CodegenCppVisitor::mod_filename
std::string mod_filename
Name of mod file (without .mod suffix)
Definition: codegen_cpp_visitor.hpp:323
nmodl::codegen::CodegenCppVisitor::get_variable_name
virtual std::string get_variable_name(const std::string &name, bool use_instance=true) const =0
Determine variable name in the structure of mechanism properties.
nmodl::ast::Program
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
-
nmodl::codegen::CodegenCppVisitor::visit_indexed_name
void visit_indexed_name(const ast::IndexedName &node) override
visit node of type ast::IndexedName
Definition: codegen_cpp_visitor.cpp:919
+
nmodl::codegen::CodegenCppVisitor::visit_indexed_name
void visit_indexed_name(const ast::IndexedName &node) override
visit node of type ast::IndexedName
Definition: codegen_cpp_visitor.cpp:929
nmodl::codegen::CodegenCppVisitor::operator_for_rhs
const char * operator_for_rhs() const noexcept
Operator for rhs vector update (matrix update)
Definition: codegen_cpp_visitor.hpp:508
-
nmodl::codegen::CodegenCppVisitor::print_prcellstate_macros
void print_prcellstate_macros() const
Print declaration of macro NRN_PRCELLSTATE for debugging.
Definition: codegen_cpp_visitor.cpp:578
+
nmodl::codegen::CodegenCppVisitor::print_prcellstate_macros
void print_prcellstate_macros() const
Print declaration of macro NRN_PRCELLSTATE for debugging.
Definition: codegen_cpp_visitor.cpp:588
nmodl::codegen::CppObjectSpecifier::Static
@ Static
nmodl::codegen::CodegenCppVisitor::printer
std::unique_ptr< CodePrinter > printer
Code printer object for target (C++)
Definition: codegen_cpp_visitor.hpp:317
- +
nmodl::codegen::CodegenCppVisitor::nrn_state_required
bool nrn_state_required() const noexcept
Check if nrn_state function is required.
Definition: codegen_cpp_visitor.cpp:125
nmodl::codegen::BlockType::State
@ State
derivative block
-
nmodl::codegen::CodegenCppVisitor::add_escape_quote
std::string add_escape_quote(const std::string &text) const
Add quotes to string to be output.
Definition: codegen_cpp_visitor.hpp:1045
+
nmodl::codegen::CodegenCppVisitor::add_escape_quote
std::string add_escape_quote(const std::string &text) const
Add quotes to string to be output.
Definition: codegen_cpp_visitor.hpp:1054
nmodl::codegen::CodegenCppVisitor::internal_method_call_encountered
bool internal_method_call_encountered
true if internal method call was encountered while processing verbatim block
Definition: codegen_cpp_visitor.hpp:396
nmodl::codegen::CodegenCppVisitor::print_v_unused
virtual void print_v_unused() const =0
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
-
nmodl::codegen::CodegenCppVisitor::method_name
std::string method_name(const std::string &name) const
Constructs the name of a function or procedure.
Definition: codegen_cpp_visitor.hpp:1055
-
nmodl::codegen::CodegenCppVisitor::visit_verbatim
void visit_verbatim(const ast::Verbatim &node) override
visit node of type ast::Verbatim
Definition: codegen_cpp_visitor.cpp:1041
-
nmodl::codegen::CodegenCppVisitor::is_net_event
bool is_net_event(const std::string &name) const noexcept
Checks if given function name is net_event.
Definition: codegen_cpp_visitor.hpp:666
+
nmodl::codegen::CodegenCppVisitor::method_name
std::string method_name(const std::string &name) const
Constructs the name of a function or procedure.
Definition: codegen_cpp_visitor.hpp:1064
+
nmodl::codegen::CodegenCppVisitor::visit_verbatim
void visit_verbatim(const ast::Verbatim &node) override
visit node of type ast::Verbatim
Definition: codegen_cpp_visitor.cpp:1051
+
nmodl::codegen::CodegenCppVisitor::is_net_event
bool is_net_event(const std::string &name) const noexcept
Checks if given function name is net_event.
Definition: codegen_cpp_visitor.hpp:670
nmodl::ast::BinaryExpression
Represents binary expression in the NMODL.
Definition: binary_expression.hpp:52
nmodl::codegen::CodegenCppVisitor::print_headers_include
virtual void print_headers_include()=0
Print all includes.
@@ -1970,14 +1982,14 @@
nmodl::codegen::CppObjectSpecifier::Virtual
@ Virtual
nmodl::codegen::CodegenCppVisitor::namespace_name
virtual std::string namespace_name()=0
Name of "our" namespace.
nmodl::codegen::CodegenCppVisitor::ion_read_statements
std::vector< std::string > ion_read_statements(BlockType type) const
For a given output block type, return statements for all read ion variables.
Definition: codegen_cpp_visitor.cpp:251
-
nmodl::codegen::CodegenCppVisitor::print_functors_definitions
void print_functors_definitions()
Print all Newton functor structs.
Definition: codegen_cpp_visitor.cpp:705
+
nmodl::codegen::CodegenCppVisitor::print_functors_definitions
void print_functors_definitions()
Print all Newton functor structs.
Definition: codegen_cpp_visitor.cpp:715
nmodl::codegen::BlockType::BeforeAfter
@ BeforeAfter
before / after block
nmodl::codegen::CodegenCppVisitor::print_data_structures
virtual void print_data_structures(bool print_initializers)=0
Print all classes.
nmodl::codegen::CodegenCppVisitor::format_double_string
std::string format_double_string(const std::string &value)
Convert a given double value to its string representation.
Definition: codegen_cpp_visitor.cpp:200
nmodl::ModToken
Represent token returned by scanner.
Definition: modtoken.hpp:50
nmodl::codegen::get_index_from_name
int get_index_from_name(const std::vector< T > &variables, const std::string &name)
Definition: codegen_cpp_visitor.hpp:181
-
nmodl::codegen::CodegenCppVisitor::print_namespace_stop
void print_namespace_stop()
Prints the end of the simulator namespace.
Definition: codegen_cpp_visitor.cpp:627
-
nmodl::codegen::CodegenCppVisitor::print_function_declaration
void print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})
Print prototype declarations of functions or procedures.
Definition: codegen_cpp_visitor.hpp:1569
+
nmodl::codegen::CodegenCppVisitor::print_namespace_stop
void print_namespace_stop()
Prints the end of the simulator namespace.
Definition: codegen_cpp_visitor.cpp:637
+
nmodl::codegen::CodegenCppVisitor::print_function_declaration
void print_function_declaration(const T &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &={ CppObjectSpecifier::Inline})
Print prototype declarations of functions or procedures.
Definition: codegen_cpp_visitor.hpp:1578
nmodl::ast::String
Represents a string.
Definition: string.hpp:52
nmodl::codegen::CodegenCppVisitor::print_nrn_state
virtual void print_nrn_state()=0
Print nrn_state / state update function definition.
nmodl::codegen::CodegenCppVisitor::backend_name
virtual std::string backend_name() const =0
Name of the code generation backend.
@@ -1985,10 +1997,10 @@
nmodl::codegen::CodegenCppVisitor::print_function_prototypes
virtual void print_function_prototypes()=0
Print function and procedures prototype declaration.
nmodl::codegen::naming::NET_SEND_METHOD
static constexpr char NET_SEND_METHOD[]
net_send function call in nmodl
Definition: codegen_naming.hpp:51
nmodl::codegen::CodegenCppVisitor::print_nrn_alloc
virtual void print_nrn_alloc()=0
Print nrn_alloc function definition.
-
nmodl::codegen::CodegenCppVisitor::visit_while_statement
void visit_while_statement(const ast::WhileStatement &node) override
visit node of type ast::WhileStatement
Definition: codegen_cpp_visitor.cpp:962
+
nmodl::codegen::CodegenCppVisitor::visit_while_statement
void visit_while_statement(const ast::WhileStatement &node) override
visit node of type ast::WhileStatement
Definition: codegen_cpp_visitor.cpp:972
nmodl::codegen::MemberType::range
@ range
range / double variables
nmodl::codegen::CodegenCppVisitor::ParamVector
std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
A vector of parameters represented by a 4-tuple of strings:
Definition: codegen_cpp_visitor.hpp:307
-
nmodl::codegen::CodegenCppVisitor::visit_statement_block
void visit_statement_block(const ast::StatementBlock &node) override
Definition: codegen_cpp_visitor.cpp:1031
+
nmodl::codegen::CodegenCppVisitor::visit_statement_block
void visit_statement_block(const ast::StatementBlock &node) override
Definition: codegen_cpp_visitor.cpp:1041
ast_visitor.hpp
Concrete visitor for all AST classes.
diff --git a/doxygen/codegen__helper__visitor_8cpp_source.html b/doxygen/codegen__helper__visitor_8cpp_source.html index 9b6f2a22b..5d711957f 100644 --- a/doxygen/codegen__helper__visitor_8cpp_source.html +++ b/doxygen/codegen__helper__visitor_8cpp_source.html @@ -968,7 +968,7 @@
nmodl::ast::BeforeBlock
Represents a BEFORE block in NMODL.
Definition: before_block.hpp:38
nmodl::codegen::CodegenInfo::num_net_receive_parameters
int num_net_receive_parameters
number of arguments to net_receive block
Definition: codegen_info.hpp:421
nmodl::ast::Verbatim
Represents a C code block.
Definition: verbatim.hpp:38
-
nmodl::codegen::naming::CELSIUS_VARIABLE
static constexpr char CELSIUS_VARIABLE[]
global temperature variable
Definition: codegen_naming.hpp:96
+
nmodl::codegen::naming::CELSIUS_VARIABLE
static constexpr char CELSIUS_VARIABLE[]
global temperature variable
Definition: codegen_naming.hpp:99
nmodl::codegen::CodegenInfo::top_verbatim_blocks
std::vector< ast::Node * > top_verbatim_blocks
all top level verbatim blocks
Definition: codegen_info.hpp:537
nmodl::codegen::CodegenHelperVisitor::visit_eigen_newton_solver_block
void visit_eigen_newton_solver_block(const ast::EigenNewtonSolverBlock &node) override
visit node of type ast::EigenNewtonSolverBlock
Definition: codegen_helper_visitor.cpp:665
nmodl::codegen::CodegenInfo::for_netcon_used
bool for_netcon_used
if for_netcon is used
Definition: codegen_info.hpp:348
@@ -1004,7 +1004,7 @@
nmodl::codegen::CodegenInfo::table_assigned_variables
std::vector< SymbolType > table_assigned_variables
Definition: codegen_info.hpp:516
nmodl::codegen::CodegenInfo::net_send_used
bool net_send_used
if net_send function is used
Definition: codegen_info.hpp:336
nmodl::codegen::Ion::valence
std::optional< double > valence
ion valence
Definition: codegen_info.hpp:67
-
nmodl::codegen::naming::POINT_PROCESS
static constexpr char POINT_PROCESS[]
point process keyword in nmodl
Definition: codegen_naming.hpp:57
+
nmodl::codegen::naming::POINT_PROCESS
static constexpr char POINT_PROCESS[]
point process keyword in nmodl
Definition: codegen_naming.hpp:60
nmodl::codegen::CodegenHelperVisitor::SymbolVectorType
std::vector< std::shared_ptr< symtab::Symbol > > SymbolVectorType
Definition: codegen_helper_visitor.hpp:49
nmodl
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
nmodl::codegen::CodegenHelperVisitor::visit_program
void visit_program(const ast::Program &node) override
visit node of type ast::Program
Definition: codegen_helper_visitor.cpp:799
@@ -1039,7 +1039,7 @@
nmodl::ast::Verbatim::get_statement
std::shared_ptr< String > get_statement() const noexcept
Getter for member variable Verbatim::statement.
Definition: verbatim.hpp:157
nmodl::parser::CDriver
Class that binds all pieces together for parsing C verbatim blocks.
Definition: c11_driver.hpp:37
nmodl::ast::BinaryExpression::get_rhs
std::shared_ptr< Expression > get_rhs() const noexcept
Getter for member variable BinaryExpression::rhs.
Definition: binary_expression.hpp:179
-
nmodl::codegen::naming::ARTIFICIAL_CELL
static constexpr char ARTIFICIAL_CELL[]
artificial cell keyword in nmodl
Definition: codegen_naming.hpp:54
+
nmodl::codegen::naming::ARTIFICIAL_CELL
static constexpr char ARTIFICIAL_CELL[]
artificial cell keyword in nmodl
Definition: codegen_naming.hpp:57
nmodl::ast::EigenNewtonSolverBlock
Represent newton solver solution block based on Eigen.
Definition: eigen_newton_solver_block.hpp:38
codegen_helper_visitor.hpp
Helper visitor to gather AST information to help code generation.
nmodl::codegen::CodegenInfo::table_count
int table_count
number of table statements
Definition: codegen_info.hpp:354
@@ -1146,13 +1146,13 @@
nmodl::codegen::CodegenInfo::prime_variables_by_order
std::vector< SymbolType > prime_variables_by_order
this is the order in which they appear in derivative block this is required while printing them in in...
Definition: codegen_info.hpp:512
nmodl::codegen::CodegenInfo::pointer_variables
std::vector< SymbolType > pointer_variables
pointer or bbcore pointer variables
Definition: codegen_info.hpp:476
nmodl::ast::BinaryExpression::get_lhs
std::shared_ptr< Expression > get_lhs() const noexcept
Getter for member variable BinaryExpression::lhs.
Definition: binary_expression.hpp:161
-
nmodl::codegen::naming::AREA_VARIABLE
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Definition: codegen_naming.hpp:66
+
nmodl::codegen::naming::AREA_VARIABLE
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Definition: codegen_naming.hpp:69
nmodl::ast::Suffix::get_type
std::shared_ptr< Name > get_type() const noexcept
Getter for member variable Suffix::type.
Definition: suffix.hpp:145
nmodl::ast::Program
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
nmodl::codegen::naming::AFTER_CVODE_METHOD
static constexpr char AFTER_CVODE_METHOD[]
cvode method in nmodl
Definition: codegen_naming.hpp:33
nmodl::ast::AfterBlock
Represents a AFTER block in NMODL.
Definition: after_block.hpp:51
nmodl::codegen::CodegenInfo::thread_var_thread_id
int thread_var_thread_id
thread id for thread promoted variables
Definition: codegen_info.hpp:380
-
nmodl::codegen::naming::DIAM_VARIABLE
static constexpr char DIAM_VARIABLE[]
inbuilt neuron variable for diameter of the compartment
Definition: codegen_naming.hpp:60
+
nmodl::codegen::naming::DIAM_VARIABLE
static constexpr char DIAM_VARIABLE[]
inbuilt neuron variable for diameter of the compartment
Definition: codegen_naming.hpp:63
nmodl::ast::ElectrodeCurrent
Represents ELECTRODE_CURRENT variables statement in NMODL.
Definition: electrode_current.hpp:39
nmodl::codegen::CodegenHelperVisitor::visit_initial_block
void visit_initial_block(const ast::InitialBlock &node) override
visit node of type ast::InitialBlock
Definition: codegen_helper_visitor.cpp:584
nmodl::symtab::SymbolTable::lookup
std::shared_ptr< Symbol > lookup(const std::string &name) const
check if symbol with given name exist in the current table (but not in parents)
Definition: symbol_table.hpp:199
diff --git a/doxygen/codegen__info_8hpp_source.html b/doxygen/codegen__info_8hpp_source.html index 4f88c607e..fb6fb819c 100644 --- a/doxygen/codegen__info_8hpp_source.html +++ b/doxygen/codegen__info_8hpp_source.html @@ -857,7 +857,7 @@
nmodl::codegen::Ion::is_ionic_current
bool is_ionic_current(const std::string &text) const
Check if variable name is a ionic current.
Definition: codegen_info.hpp:126
nmodl::codegen::Ion::Ion
Ion(std::string name)
Definition: codegen_info.hpp:74
nmodl::codegen::Ion::intra_conc_pointer_name
std::string intra_conc_pointer_name() const
Definition: codegen_info.hpp:186
-
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:180
+
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:183
-
nmodl::codegen::naming::RANDOM_SEMANTIC
static constexpr char RANDOM_SEMANTIC[]
semantic type for RANDOM variable
Definition: codegen_naming.hpp:129
-
nmodl::codegen::naming::NET_SEND_SEMANTIC
static constexpr char NET_SEND_SEMANTIC[]
semantic type for net send call
Definition: codegen_naming.hpp:132
-
nmodl::codegen::naming::FOR_NETCON_VARIABLE
static constexpr char FOR_NETCON_VARIABLE[]
name of the integer variabe to store FOR_NETCON info.
Definition: codegen_naming.hpp:141
-
nmodl::codegen::naming::CELSIUS_VARIABLE
static constexpr char CELSIUS_VARIABLE[]
global temperature variable
Definition: codegen_naming.hpp:96
-
nmodl::codegen::naming::DEFAULT_LOCAL_VAR_TYPE
static constexpr char DEFAULT_LOCAL_VAR_TYPE[]
default local variable type
Definition: codegen_naming.hpp:111
+
nmodl::codegen::naming::RANDOM_SEMANTIC
static constexpr char RANDOM_SEMANTIC[]
semantic type for RANDOM variable
Definition: codegen_naming.hpp:132
+
nmodl::codegen::naming::NET_SEND_SEMANTIC
static constexpr char NET_SEND_SEMANTIC[]
semantic type for net send call
Definition: codegen_naming.hpp:135
+
nmodl::codegen::naming::FOR_NETCON_VARIABLE
static constexpr char FOR_NETCON_VARIABLE[]
name of the integer variabe to store FOR_NETCON info.
Definition: codegen_naming.hpp:144
+
nmodl::codegen::naming::CELSIUS_VARIABLE
static constexpr char CELSIUS_VARIABLE[]
global temperature variable
Definition: codegen_naming.hpp:99
+
nmodl::codegen::naming::DEFAULT_LOCAL_VAR_TYPE
static constexpr char DEFAULT_LOCAL_VAR_TYPE[]
default local variable type
Definition: codegen_naming.hpp:114
nmodl::codegen::naming::CNEXP_METHOD
static constexpr char CNEXP_METHOD[]
cnexp method in nmodl
Definition: codegen_naming.hpp:30
-
nmodl::codegen::naming::NRN_PRIVATE_DESTRUCTOR_METHOD
constexpr char NRN_PRIVATE_DESTRUCTOR_METHOD[]
nrn_private_destructor method in generated code
Definition: codegen_naming.hpp:156
-
nmodl::codegen::naming::POINT_PROCESS_VARIABLE
static constexpr char POINT_PROCESS_VARIABLE[]
inbuilt neuron variable for point process
Definition: codegen_naming.hpp:69
-
nmodl::codegen::naming::NRN_JACOB_METHOD
static constexpr char NRN_JACOB_METHOD[]
nrn_jacob method in generated code
Definition: codegen_naming.hpp:168
-
nmodl::codegen::naming::NTHREAD_D_SHADOW
static constexpr char NTHREAD_D_SHADOW[]
shadow d variable in neuron thread structure
Definition: codegen_naming.hpp:93
-
nmodl::codegen::naming::VOLTAGE_UNUSED_VARIABLE
static constexpr char VOLTAGE_UNUSED_VARIABLE[]
range variable for voltage when unused (for vectorized model)
Definition: codegen_naming.hpp:84
-
nmodl::codegen::naming::NRN_WATCH_CHECK_METHOD
static constexpr char NRN_WATCH_CHECK_METHOD[]
nrn_watch_check method in generated c++ file
Definition: codegen_naming.hpp:171
-
nmodl::codegen::naming::POINT_PROCESS
static constexpr char POINT_PROCESS[]
point process keyword in nmodl
Definition: codegen_naming.hpp:57
+
nmodl::codegen::naming::NRN_PRIVATE_DESTRUCTOR_METHOD
constexpr char NRN_PRIVATE_DESTRUCTOR_METHOD[]
nrn_private_destructor method in generated code
Definition: codegen_naming.hpp:159
+
nmodl::codegen::naming::POINT_PROCESS_VARIABLE
static constexpr char POINT_PROCESS_VARIABLE[]
inbuilt neuron variable for point process
Definition: codegen_naming.hpp:72
+
nmodl::codegen::naming::NRN_JACOB_METHOD
static constexpr char NRN_JACOB_METHOD[]
nrn_jacob method in generated code
Definition: codegen_naming.hpp:171
+
nmodl::codegen::naming::NTHREAD_D_SHADOW
static constexpr char NTHREAD_D_SHADOW[]
shadow d variable in neuron thread structure
Definition: codegen_naming.hpp:96
+
nmodl::codegen::naming::VOLTAGE_UNUSED_VARIABLE
static constexpr char VOLTAGE_UNUSED_VARIABLE[]
range variable for voltage when unused (for vectorized model)
Definition: codegen_naming.hpp:87
+
nmodl::codegen::naming::NRN_WATCH_CHECK_METHOD
static constexpr char NRN_WATCH_CHECK_METHOD[]
nrn_watch_check method in generated c++ file
Definition: codegen_naming.hpp:174
+
nmodl::codegen::naming::POINT_PROCESS
static constexpr char POINT_PROCESS[]
point process keyword in nmodl
Definition: codegen_naming.hpp:60
nmodl
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
-
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:147
-
nmodl::codegen::naming::NTHREAD_DT_VARIABLE
static constexpr char NTHREAD_DT_VARIABLE[]
dt variable in neuron thread structure
Definition: codegen_naming.hpp:105
-
nmodl::codegen::naming::NODE_AREA_VARIABLE
static constexpr char NODE_AREA_VARIABLE[]
inbuilt neuron variable for area of the compartment
Definition: codegen_naming.hpp:63
-
nmodl::codegen::naming::NRN_ALLOC_METHOD
static constexpr char NRN_ALLOC_METHOD[]
nrn_alloc method in generated code
Definition: codegen_naming.hpp:159
+
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:150
+
nmodl::codegen::naming::NTHREAD_DT_VARIABLE
static constexpr char NTHREAD_DT_VARIABLE[]
dt variable in neuron thread structure
Definition: codegen_naming.hpp:108
+
nmodl::codegen::naming::NODE_AREA_VARIABLE
static constexpr char NODE_AREA_VARIABLE[]
inbuilt neuron variable for area of the compartment
Definition: codegen_naming.hpp:66
+
nmodl::codegen::naming::NRN_ALLOC_METHOD
static constexpr char NRN_ALLOC_METHOD[]
nrn_alloc method in generated code
Definition: codegen_naming.hpp:162
nmodl::codegen::naming::SPARSE_METHOD
static constexpr char SPARSE_METHOD[]
sparse method in nmodl
Definition: codegen_naming.hpp:42
-
nmodl::codegen::naming::ARTIFICIAL_CELL
static constexpr char ARTIFICIAL_CELL[]
artificial cell keyword in nmodl
Definition: codegen_naming.hpp:54
-
nmodl::codegen::naming::CONDUCTANCE_VARIABLE
static constexpr char CONDUCTANCE_VARIABLE[]
range variable for conductance
Definition: codegen_naming.hpp:75
-
nmodl::codegen::naming::DEFAULT_FLOAT_TYPE
static constexpr char DEFAULT_FLOAT_TYPE[]
default float variable type
Definition: codegen_naming.hpp:108
-
nmodl::codegen::naming::NTHREAD_RHS_SHADOW
static constexpr char NTHREAD_RHS_SHADOW[]
shadow rhs variable in neuron thread structure
Definition: codegen_naming.hpp:90
-
nmodl::codegen::naming::USE_TABLE_VARIABLE
static constexpr char USE_TABLE_VARIABLE[]
global variable to indicate if table is used
Definition: codegen_naming.hpp:78
-
nmodl::codegen::naming::POINT_PROCESS_SEMANTIC
static constexpr char POINT_PROCESS_SEMANTIC[]
semantic type for point process variable
Definition: codegen_naming.hpp:120
-
nmodl::codegen::naming::VERBATIM_VARIABLES_MAPPING
static const std::unordered_map< std::string, std::string > VERBATIM_VARIABLES_MAPPING
commonly used variables in verbatim block and how they should be mapped to new code generation backen...
Definition: codegen_naming.hpp:185
+
nmodl::codegen::naming::ARTIFICIAL_CELL
static constexpr char ARTIFICIAL_CELL[]
artificial cell keyword in nmodl
Definition: codegen_naming.hpp:57
+
nmodl::codegen::naming::CONDUCTANCE_VARIABLE
static constexpr char CONDUCTANCE_VARIABLE[]
range variable for conductance
Definition: codegen_naming.hpp:78
+
nmodl::codegen::naming::DEFAULT_FLOAT_TYPE
static constexpr char DEFAULT_FLOAT_TYPE[]
default float variable type
Definition: codegen_naming.hpp:111
+
nmodl::codegen::naming::NTHREAD_RHS_SHADOW
static constexpr char NTHREAD_RHS_SHADOW[]
shadow rhs variable in neuron thread structure
Definition: codegen_naming.hpp:93
+
nmodl::codegen::naming::USE_TABLE_VARIABLE
static constexpr char USE_TABLE_VARIABLE[]
global variable to indicate if table is used
Definition: codegen_naming.hpp:81
+
nmodl::codegen::naming::POINT_PROCESS_SEMANTIC
static constexpr char POINT_PROCESS_SEMANTIC[]
semantic type for point process variable
Definition: codegen_naming.hpp:123
+
nmodl::codegen::naming::VERBATIM_VARIABLES_MAPPING
static const std::unordered_map< std::string, std::string > VERBATIM_VARIABLES_MAPPING
commonly used variables in verbatim block and how they should be mapped to new code generation backen...
Definition: codegen_naming.hpp:188
nmodl::codegen::naming::NMODL_VERSION
static constexpr char NMODL_VERSION[]
nmodl language version
Definition: codegen_naming.hpp:21
-
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:144
-
nmodl::codegen::naming::THREAD_ARGS
static constexpr char THREAD_ARGS[]
verbatim name of the variable for nrn thread arguments
Definition: codegen_naming.hpp:174
-
nmodl::codegen::naming::POINTER_SEMANTIC
static constexpr char POINTER_SEMANTIC[]
semantic type for pointer variable
Definition: codegen_naming.hpp:123
-
nmodl::codegen::naming::AREA_SEMANTIC
static constexpr char AREA_SEMANTIC[]
semantic type for area variable
Definition: codegen_naming.hpp:117
-
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:165
-
nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
Definition: codegen_naming.hpp:199
-
nmodl::codegen::naming::TQITEM_VARIABLE
static constexpr char TQITEM_VARIABLE[]
inbuilt neuron variable for tqitem process
Definition: codegen_naming.hpp:72
-
nmodl::codegen::naming::DEFAULT_INTEGER_TYPE
static constexpr char DEFAULT_INTEGER_TYPE[]
default integer variable type
Definition: codegen_naming.hpp:114
+
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:147
+
nmodl::codegen::naming::THREAD_ARGS
static constexpr char THREAD_ARGS[]
verbatim name of the variable for nrn thread arguments
Definition: codegen_naming.hpp:177
+
nmodl::codegen::naming::POINTER_SEMANTIC
static constexpr char POINTER_SEMANTIC[]
semantic type for pointer variable
Definition: codegen_naming.hpp:126
+
nmodl::codegen::naming::AREA_SEMANTIC
static constexpr char AREA_SEMANTIC[]
semantic type for area variable
Definition: codegen_naming.hpp:120
+
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:168
+
nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
Definition: codegen_naming.hpp:202
+
nmodl::codegen::naming::TQITEM_VARIABLE
static constexpr char TQITEM_VARIABLE[]
inbuilt neuron variable for tqitem process
Definition: codegen_naming.hpp:75
+
nmodl::codegen::naming::DEFAULT_INTEGER_TYPE
static constexpr char DEFAULT_INTEGER_TYPE[]
default integer variable type
Definition: codegen_naming.hpp:117
nmodl::codegen::naming::CVODE_T_V_METHOD
static constexpr char CVODE_T_V_METHOD[]
cvode_t_v method in nmodl
Definition: codegen_naming.hpp:39
-
nmodl::codegen::naming::INST_GLOBAL_MEMBER
static constexpr char INST_GLOBAL_MEMBER[]
instance struct member pointing to the global variable structure
Definition: codegen_naming.hpp:99
-
nmodl::codegen::naming::CORE_POINTER_SEMANTIC
static constexpr char CORE_POINTER_SEMANTIC[]
semantic type for core pointer variable
Definition: codegen_naming.hpp:126
-
nmodl::codegen::naming::WATCH_SEMANTIC
static constexpr char WATCH_SEMANTIC[]
semantic type for watch statement
Definition: codegen_naming.hpp:135
+
nmodl::codegen::naming::INST_GLOBAL_MEMBER
static constexpr char INST_GLOBAL_MEMBER[]
instance struct member pointing to the global variable structure
Definition: codegen_naming.hpp:102
+
nmodl::codegen::naming::CORE_POINTER_SEMANTIC
static constexpr char CORE_POINTER_SEMANTIC[]
semantic type for core pointer variable
Definition: codegen_naming.hpp:129
+
nmodl::codegen::naming::WATCH_SEMANTIC
static constexpr char WATCH_SEMANTIC[]
semantic type for watch statement
Definition: codegen_naming.hpp:138
nmodl::codegen::naming::DERIVIMPLICIT_METHOD
static constexpr char DERIVIMPLICIT_METHOD[]
derivimplicit method in nmodl
Definition: codegen_naming.hpp:24
nmodl::codegen::naming::NET_MOVE_METHOD
static constexpr char NET_MOVE_METHOD[]
net_move function call in nmodl
Definition: codegen_naming.hpp:48
nmodl::codegen::naming::EULER_METHOD
static constexpr char EULER_METHOD[]
euler method in nmodl
Definition: codegen_naming.hpp:27
nmodl::codegen::naming::NET_EVENT_METHOD
static constexpr char NET_EVENT_METHOD[]
net_event function call in nmodl
Definition: codegen_naming.hpp:45
-
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:162
-
nmodl::codegen::naming::AREA_VARIABLE
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Definition: codegen_naming.hpp:66
+
nmodl::codegen::naming::NRN_POINTING_METHOD
static constexpr char NRN_POINTING_METHOD[]
nrn_pointing function in nmodl
Definition: codegen_naming.hpp:54
+
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:165
+
nmodl::codegen::naming::AREA_VARIABLE
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Definition: codegen_naming.hpp:69
nmodl::codegen::naming::AFTER_CVODE_METHOD
static constexpr char AFTER_CVODE_METHOD[]
cvode method in nmodl
Definition: codegen_naming.hpp:33
-
nmodl::codegen::naming::T_SAVE_VARIABLE
static constexpr char T_SAVE_VARIABLE[]
variable t indicating last execution time of net receive block
Definition: codegen_naming.hpp:87
-
nmodl::codegen::naming::FOR_NETCON_SEMANTIC
static constexpr char FOR_NETCON_SEMANTIC[]
semantic type for for_netcon statement
Definition: codegen_naming.hpp:138
-
nmodl::codegen::naming::NTHREAD_T_VARIABLE
static constexpr char NTHREAD_T_VARIABLE[]
t variable in neuron thread structure
Definition: codegen_naming.hpp:102
-
nmodl::codegen::naming::DIAM_VARIABLE
static constexpr char DIAM_VARIABLE[]
inbuilt neuron variable for diameter of the compartment
Definition: codegen_naming.hpp:60
-
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:150
-
nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
range variable when conductance is not used (for vectorized model)
Definition: codegen_naming.hpp:81
-
nmodl::codegen::naming::THREAD_ARGS_PROTO
static constexpr char THREAD_ARGS_PROTO[]
verbatim name of the variable for nrn thread arguments in prototype
Definition: codegen_naming.hpp:177
+
nmodl::codegen::naming::T_SAVE_VARIABLE
static constexpr char T_SAVE_VARIABLE[]
variable t indicating last execution time of net receive block
Definition: codegen_naming.hpp:90
+
nmodl::codegen::naming::FOR_NETCON_SEMANTIC
static constexpr char FOR_NETCON_SEMANTIC[]
semantic type for for_netcon statement
Definition: codegen_naming.hpp:141
+
nmodl::codegen::naming::NTHREAD_T_VARIABLE
static constexpr char NTHREAD_T_VARIABLE[]
t variable in neuron thread structure
Definition: codegen_naming.hpp:105
+
nmodl::codegen::naming::DIAM_VARIABLE
static constexpr char DIAM_VARIABLE[]
inbuilt neuron variable for diameter of the compartment
Definition: codegen_naming.hpp:63
+
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:153
+
nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
range variable when conductance is not used (for vectorized model)
Definition: codegen_naming.hpp:84
+
nmodl::codegen::naming::THREAD_ARGS_PROTO
static constexpr char THREAD_ARGS_PROTO[]
verbatim name of the variable for nrn thread arguments in prototype
Definition: codegen_naming.hpp:180
nmodl::codegen::naming::CVODE_T_METHOD
static constexpr char CVODE_T_METHOD[]
cvode_t method in nmodl
Definition: codegen_naming.hpp:36
-
nmodl::codegen::naming::NRN_PRIVATE_CONSTRUCTOR_METHOD
constexpr char NRN_PRIVATE_CONSTRUCTOR_METHOD[]
nrn_private_constructor method in generated code
Definition: codegen_naming.hpp:153
+
nmodl::codegen::naming::NRN_PRIVATE_CONSTRUCTOR_METHOD
constexpr char NRN_PRIVATE_CONSTRUCTOR_METHOD[]
nrn_private_constructor method in generated code
Definition: codegen_naming.hpp:156
nmodl::codegen::naming::NET_SEND_METHOD
static constexpr char NET_SEND_METHOD[]
net_send function call in nmodl
Definition: codegen_naming.hpp:51
-
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:180
+
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:183
diff --git a/doxygen/functions_u.html b/doxygen/functions_u.html index 73eb4d588..24d8ef8a3 100644 --- a/doxygen/functions_u.html +++ b/doxygen/functions_u.html @@ -242,7 +242,7 @@

- u -

diff --git a/doxygen/group__codegen__backends.html b/doxygen/group__codegen__backends.html index 1ad793b1b..861bc33ab 100644 --- a/doxygen/group__codegen__backends.html +++ b/doxygen/group__codegen__backends.html @@ -216,7 +216,7 @@

Definition at line 1569 of file codegen_cpp_visitor.hpp.

+

Definition at line 1578 of file codegen_cpp_visitor.hpp.

@@ -279,7 +279,7 @@

Definition at line 1549 of file codegen_cpp_visitor.hpp.

+

Definition at line 1558 of file codegen_cpp_visitor.hpp.

diff --git a/doxygen/group__codegen__backends.js b/doxygen/group__codegen__backends.js index 75e30ed8e..3c1c5ad35 100644 --- a/doxygen/group__codegen__backends.js +++ b/doxygen/group__codegen__backends.js @@ -228,6 +228,7 @@ var group__codegen__backends = [ "is_net_event", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a294f3c4467883beffdc0d6bea67e1741", null ], [ "is_net_move", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a7559257a5ad55a48d1221522838c5daf", null ], [ "is_net_send", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a2ecbf452d80ce4914271469183e2e31c", null ], + [ "is_nrn_pointing", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#ab17aa507fc9629eb122bd46c839e0261", null ], [ "local_var_type", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#ac03f9380fcd4421f95e56f37f0cd00c7", null ], [ "make_symbol", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#abb107f782ba7985c00ac77dc77acd35c", null ], [ "method_name", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a7cb14cb8ebe04982bb17999fa1a2c479", null ], @@ -291,6 +292,7 @@ var group__codegen__backends = [ "print_nrn_cur_non_conductance_kernel", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#aaf72cbf7288677fa045647df13322804", null ], [ "print_nrn_current", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a4bf65c93bea904102b63553f3e5dd1b3", null ], [ "print_nrn_destructor", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a481001b393776c233ccdc069916d2d7c", null ], + [ "print_nrn_pointing", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a179ec184fad5533dd35859beea905e37", null ], [ "print_nrn_state", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a2453a1be52f39c3fa9bab2603f1f4773", null ], [ "print_prcellstate_macros", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a522261006f1cc94869ef15cd26b739da", null ], [ "print_procedure", "classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html#a60bf374a3063ccd280e46b7af0e48645", null ], diff --git a/doxygen/implicit__argument__visitor_8cpp_source.html b/doxygen/implicit__argument__visitor_8cpp_source.html index 481789275..0ce9d713e 100644 --- a/doxygen/implicit__argument__visitor_8cpp_source.html +++ b/doxygen/implicit__argument__visitor_8cpp_source.html @@ -157,7 +157,7 @@
nmodl::ast::FunctionCall::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:7061
-
nmodl::codegen::naming::CELSIUS_VARIABLE
static constexpr char CELSIUS_VARIABLE[]
global temperature variable
Definition: codegen_naming.hpp:96
+
nmodl::codegen::naming::CELSIUS_VARIABLE
static constexpr char CELSIUS_VARIABLE[]
global temperature variable
Definition: codegen_naming.hpp:99
implicit_argument_visitor.hpp
Visitor for adding implicit arguments to [Core]NEURON functions.
ast_decl.hpp
THIS FILE IS GENERATED AT BUILD TIME AND SHALL NOT BE EDITED.
nmodl::details::needs_neuron_thread_first_arg
bool needs_neuron_thread_first_arg(const std::string &token)
Checks if token is one of the functions coming from NEURON/CoreNEURON and needs passing NrnThread* as...
Definition: token_mapping.cpp:235
diff --git a/doxygen/namespacemembers_func.html b/doxygen/namespacemembers_func.html index 4fa271394..03d044312 100644 --- a/doxygen/namespacemembers_func.html +++ b/doxygen/namespacemembers_func.html @@ -344,6 +344,9 @@

- i -

  • is_method() : nmodl
    • +
  • is_nrn_pointing() +: nmodl +
  • is_number() : nmodl::visitor
    • diff --git a/doxygen/namespacemembers_i.html b/doxygen/namespacemembers_i.html index 11bb44f83..86c38107a 100644 --- a/doxygen/namespacemembers_i.html +++ b/doxygen/namespacemembers_i.html @@ -150,6 +150,9 @@

    - i -

    • is_method() : nmodl
      • +
    • is_nrn_pointing() +: nmodl +
    • is_number() : nmodl::visitor
      • diff --git a/doxygen/namespacemembers_n.html b/doxygen/namespacemembers_n.html index 35f2e8e7b..09816f2bc 100644 --- a/doxygen/namespacemembers_n.html +++ b/doxygen/namespacemembers_n.html @@ -195,6 +195,9 @@

      - n -

      • NRN_JACOB_METHOD : nmodl::codegen::naming
        • +
      • NRN_POINTING_METHOD +: nmodl::codegen::naming +
      • NRN_PRIVATE_CONSTRUCTOR_METHOD : nmodl::codegen::naming
        • diff --git a/doxygen/namespacemembers_vars.html b/doxygen/namespacemembers_vars.html index d0265d7f8..9a91ce752 100644 --- a/doxygen/namespacemembers_vars.html +++ b/doxygen/namespacemembers_vars.html @@ -295,6 +295,9 @@

        - n -

        • NRN_JACOB_METHOD : nmodl::codegen::naming
          • +
        • NRN_POINTING_METHOD +: nmodl::codegen::naming +
        • NRN_PRIVATE_CONSTRUCTOR_METHOD : nmodl::codegen::naming
          • diff --git a/doxygen/namespacenmodl.html b/doxygen/namespacenmodl.html index 9cba87e18..2d3eb6d5a 100644 --- a/doxygen/namespacenmodl.html +++ b/doxygen/namespacenmodl.html @@ -267,6 +267,9 @@ bool is_random_construct_function (const std::string &name)  Is given name a one of the function for RANDOM construct. More...
            +bool is_nrn_pointing (const std::string &name) + Is given name nrn_pointing. More...
          +  template<typename T > std::enable_if< std::is_base_of< ast::Ast, T >::value, std::string >::type to_nmodl (const std::shared_ptr< T > &node, const std::set< ast::AstNodeType > &exclude_types={})  Given a shared pointer to an AST node, return the NMODL string representation. More...
          @@ -689,6 +692,28 @@

          Definition at line 274 of file token_mapping.cpp.

          + + + +

          ◆ is_nrn_pointing()

          + +
          +
          + + + + + + + + +
          bool nmodl::is_nrn_pointing (const std::string & name)
          +
          + +

          Is given name nrn_pointing.

          + +

          Definition at line 295 of file visitor_utils.cpp.

          +
          diff --git a/doxygen/namespacenmodl_1_1codegen.html b/doxygen/namespacenmodl_1_1codegen.html index 6772fc48f..ceea271aa 100644 --- a/doxygen/namespacenmodl_1_1codegen.html +++ b/doxygen/namespacenmodl_1_1codegen.html @@ -441,7 +441,7 @@

          -

          Definition at line 849 of file codegen_cpp_visitor.cpp.

          +

          Definition at line 859 of file codegen_cpp_visitor.cpp.

          diff --git a/doxygen/namespacenmodl_1_1codegen_1_1naming.html b/doxygen/namespacenmodl_1_1codegen_1_1naming.html index 39154881a..f7403c0ef 100644 --- a/doxygen/namespacenmodl_1_1codegen_1_1naming.html +++ b/doxygen/namespacenmodl_1_1codegen_1_1naming.html @@ -137,6 +137,9 @@ static constexpr char NET_SEND_METHOD [] = "net_send"  net_send function call in nmodl More...
            +static constexpr char NRN_POINTING_METHOD [] = "nrn_pointing" + nrn_pointing function in nmodl More...
          +  static constexpr char ARTIFICIAL_CELL [] = "ARTIFICIAL_CELL"  artificial cell keyword in nmodl More...
            @@ -321,7 +324,7 @@

          Definition at line 117 of file codegen_naming.hpp.

          +

          Definition at line 120 of file codegen_naming.hpp.

          @@ -347,7 +350,7 @@

          Definition at line 66 of file codegen_naming.hpp.

          +

          Definition at line 69 of file codegen_naming.hpp.

          @@ -373,7 +376,7 @@

          Definition at line 54 of file codegen_naming.hpp.

          +

          Definition at line 57 of file codegen_naming.hpp.

          @@ -399,7 +402,7 @@

          Definition at line 96 of file codegen_naming.hpp.

          +

          Definition at line 99 of file codegen_naming.hpp.

          @@ -451,7 +454,7 @@

          Definition at line 81 of file codegen_naming.hpp.

          +

          Definition at line 84 of file codegen_naming.hpp.

          @@ -477,7 +480,7 @@

          Definition at line 75 of file codegen_naming.hpp.

          +

          Definition at line 78 of file codegen_naming.hpp.

          @@ -503,7 +506,7 @@

          Definition at line 126 of file codegen_naming.hpp.

          +

          Definition at line 129 of file codegen_naming.hpp.

          @@ -581,7 +584,7 @@

          Definition at line 108 of file codegen_naming.hpp.

          +

          Definition at line 111 of file codegen_naming.hpp.

          @@ -607,7 +610,7 @@

          Definition at line 114 of file codegen_naming.hpp.

          +

          Definition at line 117 of file codegen_naming.hpp.

          @@ -633,7 +636,7 @@

          Definition at line 111 of file codegen_naming.hpp.

          +

          Definition at line 114 of file codegen_naming.hpp.

          @@ -685,7 +688,7 @@

          Definition at line 60 of file codegen_naming.hpp.

          +

          Definition at line 63 of file codegen_naming.hpp.

          @@ -737,7 +740,7 @@

          Definition at line 138 of file codegen_naming.hpp.

          +

          Definition at line 141 of file codegen_naming.hpp.

          @@ -763,7 +766,7 @@

          Definition at line 141 of file codegen_naming.hpp.

          +

          Definition at line 144 of file codegen_naming.hpp.

          @@ -789,7 +792,7 @@

          Definition at line 99 of file codegen_naming.hpp.

          +

          Definition at line 102 of file codegen_naming.hpp.

          @@ -815,7 +818,7 @@

          Definition at line 180 of file codegen_naming.hpp.

          +

          Definition at line 183 of file codegen_naming.hpp.

          @@ -919,7 +922,7 @@

          Definition at line 132 of file codegen_naming.hpp.

          +

          Definition at line 135 of file codegen_naming.hpp.

          @@ -972,7 +975,7 @@

          Definition at line 63 of file codegen_naming.hpp.

          +

          Definition at line 66 of file codegen_naming.hpp.

          @@ -998,7 +1001,7 @@

          Definition at line 159 of file codegen_naming.hpp.

          +

          Definition at line 162 of file codegen_naming.hpp.

          @@ -1024,7 +1027,7 @@

          Definition at line 147 of file codegen_naming.hpp.

          +

          Definition at line 150 of file codegen_naming.hpp.

          @@ -1050,7 +1053,7 @@

          Definition at line 165 of file codegen_naming.hpp.

          +

          Definition at line 168 of file codegen_naming.hpp.

          @@ -1076,7 +1079,7 @@

          Definition at line 150 of file codegen_naming.hpp.

          +

          Definition at line 153 of file codegen_naming.hpp.

          @@ -1102,7 +1105,7 @@

          Definition at line 144 of file codegen_naming.hpp.

          +

          Definition at line 147 of file codegen_naming.hpp.

          @@ -1128,7 +1131,33 @@

          Definition at line 168 of file codegen_naming.hpp.

          +

          Definition at line 171 of file codegen_naming.hpp.

          + + + + +

          ◆ NRN_POINTING_METHOD

          + +
          +
          + + + + + +
          + + + + +
          constexpr char nmodl::codegen::naming::NRN_POINTING_METHOD[] = "nrn_pointing"
          +           		+staticconstexpr
          +
          + +

          nrn_pointing function in nmodl

          + +

          Definition at line 54 of file codegen_naming.hpp.

          @@ -1154,7 +1183,7 @@

          Definition at line 153 of file codegen_naming.hpp.

          +

          Definition at line 156 of file codegen_naming.hpp.

          @@ -1180,7 +1209,7 @@

          Definition at line 156 of file codegen_naming.hpp.

          +

          Definition at line 159 of file codegen_naming.hpp.

          @@ -1206,7 +1235,7 @@

          Definition at line 162 of file codegen_naming.hpp.

          +

          Definition at line 165 of file codegen_naming.hpp.

          @@ -1232,7 +1261,7 @@

          Definition at line 171 of file codegen_naming.hpp.

          +

          Definition at line 174 of file codegen_naming.hpp.

          @@ -1258,7 +1287,7 @@

          Definition at line 93 of file codegen_naming.hpp.

          +

          Definition at line 96 of file codegen_naming.hpp.

          @@ -1284,7 +1313,7 @@

          Definition at line 105 of file codegen_naming.hpp.

          +

          Definition at line 108 of file codegen_naming.hpp.

          @@ -1310,7 +1339,7 @@

          Definition at line 90 of file codegen_naming.hpp.

          +

          Definition at line 93 of file codegen_naming.hpp.

          @@ -1336,7 +1365,7 @@

          Definition at line 102 of file codegen_naming.hpp.

          +

          Definition at line 105 of file codegen_naming.hpp.

          @@ -1362,7 +1391,7 @@

          Definition at line 57 of file codegen_naming.hpp.

          +

          Definition at line 60 of file codegen_naming.hpp.

          @@ -1388,7 +1417,7 @@

          Definition at line 120 of file codegen_naming.hpp.

          +

          Definition at line 123 of file codegen_naming.hpp.

          @@ -1414,7 +1443,7 @@

          Definition at line 69 of file codegen_naming.hpp.

          +

          Definition at line 72 of file codegen_naming.hpp.

          @@ -1440,7 +1469,7 @@

          Definition at line 123 of file codegen_naming.hpp.

          +

          Definition at line 126 of file codegen_naming.hpp.

          @@ -1472,7 +1501,7 @@

          {"random_ipick", "nrnran123_ipick"},
          {"random_dpick", "nrnran123_dblpick"}}
          -

          Definition at line 199 of file codegen_naming.hpp.

          +

          Definition at line 202 of file codegen_naming.hpp.

          @@ -1498,7 +1527,7 @@

          Definition at line 129 of file codegen_naming.hpp.

          +

          Definition at line 132 of file codegen_naming.hpp.

          @@ -1550,7 +1579,7 @@

          Definition at line 87 of file codegen_naming.hpp.

          +

          Definition at line 90 of file codegen_naming.hpp.

          @@ -1576,7 +1605,7 @@

          Definition at line 174 of file codegen_naming.hpp.

          +

          Definition at line 177 of file codegen_naming.hpp.

          @@ -1602,7 +1631,7 @@

          Definition at line 177 of file codegen_naming.hpp.

          +

          Definition at line 180 of file codegen_naming.hpp.

          @@ -1628,7 +1657,7 @@

          Definition at line 72 of file codegen_naming.hpp.

          +

          Definition at line 75 of file codegen_naming.hpp.

          @@ -1654,7 +1683,7 @@

          Definition at line 78 of file codegen_naming.hpp.

          +

          Definition at line 81 of file codegen_naming.hpp.

          @@ -1691,7 +1720,7 @@

          Definition at line 185 of file codegen_naming.hpp.

          +

          Definition at line 188 of file codegen_naming.hpp.

          @@ -1717,7 +1746,7 @@

          Definition at line 84 of file codegen_naming.hpp.

          +

          Definition at line 87 of file codegen_naming.hpp.

          @@ -1743,7 +1772,7 @@

          Definition at line 135 of file codegen_naming.hpp.

          +

          Definition at line 138 of file codegen_naming.hpp.

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--- a/doxygen/semantic__analysis__visitor_8cpp_source.html +++ b/doxygen/semantic__analysis__visitor_8cpp_source.html @@ -303,138 +303,148 @@
          207  // The first arg of a RANDOM function must be a random_var
          208  // Otherwise it's an error
          209  auto fname = node.get_node_name();
          -
          210  if (is_random_construct_function(fname)) {
          -
          211  const auto& arguments = node.get_arguments();
          -
          212  if (!arguments.empty()) {
          -
          213  auto arg0 = arguments.front();
          -
          214  if (arg0->is_var_name()) {
          -
          215  auto name = arg0->get_node_name();
          -
          216  auto symbol = program_symtab->lookup(name);
          -
          217  if (symbol->has_any_property(symtab::syminfo::NmodlType::random_var)) {
          -
          218  node.visit_children(*this);
          -
          219  return;
          -
          220  }
          -
          221  }
          -
          222  }
          -
          223  auto position = node.get_name()->get_token()->position();
          -
          224  logger->critical(
          -
          225  fmt::format("SemanticAnalysisVisitor :: random function {} at {} :: The first arg must "
          -
          226  "be a random variable",
          -
          227  fname,
          -
          228  position));
          -
          229  check_fail = true;
          -
          230  }
          -
          231  node.visit_children(*this);
          -
          232  /// -->
          -
          233 }
          -
          234 
          -
          235 void SemanticAnalysisVisitor::visit_table_statement(const ast::TableStatement& tableStmt) {
          -
          236  /// <-- This code is for check 1
          -
          237  if ((in_function || in_procedure) && !one_arg_in_procedure_function) {
          -
          238  logger->critical(
          -
          239  "SemanticAnalysisVisitor :: The procedure or function containing the TABLE statement "
          -
          240  "should contains exactly one argument.");
          -
          241  check_fail = true;
          -
          242  }
          -
          243  /// -->
          -
          244  /// <-- This code is for check 3
          -
          245  const auto& table_vars = tableStmt.get_table_vars();
          -
          246  if (in_function && !table_vars.empty()) {
          -
          247  logger->critical(
          -
          248  "SemanticAnalysisVisitor :: TABLE statement in FUNCTION cannot have a table name "
          -
          249  "list.");
          -
          250  }
          -
          251  if (in_procedure && table_vars.empty()) {
          -
          252  logger->critical(
          -
          253  "SemanticAnalysisVisitor :: TABLE statement in PROCEDURE must have a table name list.");
          -
          254  }
          -
          255  /// -->
          -
          256 }
          -
          257 
          -
          258 void SemanticAnalysisVisitor::visit_destructor_block(const ast::DestructorBlock& /* node */) {
          -
          259  /// <-- This code is for check 2
          -
          260  if (!is_point_process) {
          -
          261  logger->warn(
          -
          262  "SemanticAnalysisVisitor :: This mod file is not point process but contains a "
          -
          263  "destructor.");
          -
          264  check_fail = true;
          -
          265  }
          -
          266  /// -->
          -
          267 }
          -
          268 
          -
          269 void SemanticAnalysisVisitor::visit_independent_block(const ast::IndependentBlock& node) {
          -
          270  /// <-- This code is for check 5
          -
          271  for (const auto& n: node.get_variables()) {
          -
          272  if (n->get_value()->get_value() != "t") {
          -
          273  logger->warn(
          -
          274  "SemanticAnalysisVisitor :: '{}' cannot be used as an independent variable, only "
          -
          275  "'t' is allowed.",
          -
          276  n->get_value()->get_value());
          -
          277  }
          -
          278  }
          -
          279  /// -->
          -
          280 }
          -
          281 
          -
          282 void SemanticAnalysisVisitor::visit_function_table_block(const ast::FunctionTableBlock& node) {
          -
          283  /// <-- This code is for check 7
          -
          284  if (node.get_parameters().size() < 1) {
          -
          285  logger->critical(
          -
          286  "SemanticAnalysisVisitor :: Function table '{}' must have one or more arguments.",
          -
          287  node.get_node_name());
          -
          288  check_fail = true;
          -
          289  }
          -
          290  /// -->
          -
          291 }
          -
          292 
          -
          293 void SemanticAnalysisVisitor::visit_protect_statement(const ast::ProtectStatement& /* node */) {
          -
          294  /// <-- This code is for check 6
          -
          295  if (accel_backend) {
          -
          296  logger->error("PROTECT statement is not supported with GPU execution");
          -
          297  }
          -
          298  if (in_mutex) {
          -
          299  logger->warn("SemanticAnalysisVisitor :: Find a PROTECT inside a already locked part.");
          -
          300  }
          -
          301  /// -->
          -
          302 }
          -
          303 
          -
          304 void SemanticAnalysisVisitor::visit_mutex_lock(const ast::MutexLock& /* node */) {
          -
          305  /// <-- This code is for check 6
          -
          306  if (accel_backend) {
          -
          307  logger->error("MUTEXLOCK statement is not supported with GPU execution");
          -
          308  }
          -
          309  if (in_mutex) {
          -
          310  logger->warn("SemanticAnalysisVisitor :: Found a MUTEXLOCK inside an already locked part.");
          -
          311  }
          -
          312  in_mutex = true;
          -
          313  /// -->
          -
          314 }
          -
          315 
          -
          316 void SemanticAnalysisVisitor::visit_mutex_unlock(const ast::MutexUnlock& /* node */) {
          -
          317  /// <-- This code is for check 6
          -
          318  if (accel_backend) {
          -
          319  logger->error("MUTEXUNLOCK statement is not supported with GPU execution");
          -
          320  }
          -
          321  if (!in_mutex) {
          -
          322  logger->warn("SemanticAnalysisVisitor :: Found a MUTEXUNLOCK outside a locked part.");
          -
          323  }
          -
          324  in_mutex = false;
          -
          325  /// -->
          -
          326 }
          -
          327 
          -
          328 } // namespace visitor
          -
          329 } // namespace nmodl
          +
          210  auto position = node.get_name()->get_token()->position();
          +
          211 
          +
          212  if (is_random_construct_function(fname)) {
          +
          213  const auto& arguments = node.get_arguments();
          +
          214  if (!arguments.empty()) {
          +
          215  auto arg0 = arguments.front();
          +
          216  if (arg0->is_var_name()) {
          +
          217  auto name = arg0->get_node_name();
          +
          218  auto symbol = program_symtab->lookup(name);
          +
          219  if (symbol->has_any_property(symtab::syminfo::NmodlType::random_var)) {
          +
          220  node.visit_children(*this);
          +
          221  return;
          +
          222  }
          +
          223  }
          +
          224  }
          +
          225  logger->critical(
          +
          226  fmt::format("SemanticAnalysisVisitor :: random function {} at {} :: The first arg must "
          +
          227  "be a random variable",
          +
          228  fname,
          +
          229  position));
          +
          230  check_fail = true;
          +
          231  }
          +
          232 
          +
          233  if (is_nrn_pointing(fname)) {
          +
          234  if (size_t args_size = node.get_arguments().size(); args_size != 1) {
          +
          235  logger->critical(
          +
          236  fmt::format("nrn_pointing excepts exactly one argument, got: {}", args_size));
          +
          237  check_fail = true;
          +
          238  }
          +
          239  }
          +
          240 
          +
          241  node.visit_children(*this);
          +
          242  /// -->
          +
          243 }
          +
          244 
          +
          245 void SemanticAnalysisVisitor::visit_table_statement(const ast::TableStatement& tableStmt) {
          +
          246  /// <-- This code is for check 1
          +
          247  if ((in_function || in_procedure) && !one_arg_in_procedure_function) {
          +
          248  logger->critical(
          +
          249  "SemanticAnalysisVisitor :: The procedure or function containing the TABLE statement "
          +
          250  "should contains exactly one argument.");
          +
          251  check_fail = true;
          +
          252  }
          +
          253  /// -->
          +
          254  /// <-- This code is for check 3
          +
          255  const auto& table_vars = tableStmt.get_table_vars();
          +
          256  if (in_function && !table_vars.empty()) {
          +
          257  logger->critical(
          +
          258  "SemanticAnalysisVisitor :: TABLE statement in FUNCTION cannot have a table name "
          +
          259  "list.");
          +
          260  }
          +
          261  if (in_procedure && table_vars.empty()) {
          +
          262  logger->critical(
          +
          263  "SemanticAnalysisVisitor :: TABLE statement in PROCEDURE must have a table name list.");
          +
          264  }
          +
          265  /// -->
          +
          266 }
          +
          267 
          +
          268 void SemanticAnalysisVisitor::visit_destructor_block(const ast::DestructorBlock& /* node */) {
          +
          269  /// <-- This code is for check 2
          +
          270  if (!is_point_process) {
          +
          271  logger->warn(
          +
          272  "SemanticAnalysisVisitor :: This mod file is not point process but contains a "
          +
          273  "destructor.");
          +
          274  check_fail = true;
          +
          275  }
          +
          276  /// -->
          +
          277 }
          +
          278 
          +
          279 void SemanticAnalysisVisitor::visit_independent_block(const ast::IndependentBlock& node) {
          +
          280  /// <-- This code is for check 5
          +
          281  for (const auto& n: node.get_variables()) {
          +
          282  if (n->get_value()->get_value() != "t") {
          +
          283  logger->warn(
          +
          284  "SemanticAnalysisVisitor :: '{}' cannot be used as an independent variable, only "
          +
          285  "'t' is allowed.",
          +
          286  n->get_value()->get_value());
          +
          287  }
          +
          288  }
          +
          289  /// -->
          +
          290 }
          +
          291 
          +
          292 void SemanticAnalysisVisitor::visit_function_table_block(const ast::FunctionTableBlock& node) {
          +
          293  /// <-- This code is for check 7
          +
          294  if (node.get_parameters().size() < 1) {
          +
          295  logger->critical(
          +
          296  "SemanticAnalysisVisitor :: Function table '{}' must have one or more arguments.",
          +
          297  node.get_node_name());
          +
          298  check_fail = true;
          +
          299  }
          +
          300  /// -->
          +
          301 }
          +
          302 
          +
          303 void SemanticAnalysisVisitor::visit_protect_statement(const ast::ProtectStatement& /* node */) {
          +
          304  /// <-- This code is for check 6
          +
          305  if (accel_backend) {
          +
          306  logger->error("PROTECT statement is not supported with GPU execution");
          +
          307  }
          +
          308  if (in_mutex) {
          +
          309  logger->warn("SemanticAnalysisVisitor :: Find a PROTECT inside a already locked part.");
          +
          310  }
          +
          311  /// -->
          +
          312 }
          +
          313 
          +
          314 void SemanticAnalysisVisitor::visit_mutex_lock(const ast::MutexLock& /* node */) {
          +
          315  /// <-- This code is for check 6
          +
          316  if (accel_backend) {
          +
          317  logger->error("MUTEXLOCK statement is not supported with GPU execution");
          +
          318  }
          +
          319  if (in_mutex) {
          +
          320  logger->warn("SemanticAnalysisVisitor :: Found a MUTEXLOCK inside an already locked part.");
          +
          321  }
          +
          322  in_mutex = true;
          +
          323  /// -->
          +
          324 }
          +
          325 
          +
          326 void SemanticAnalysisVisitor::visit_mutex_unlock(const ast::MutexUnlock& /* node */) {
          +
          327  /// <-- This code is for check 6
          +
          328  if (accel_backend) {
          +
          329  logger->error("MUTEXUNLOCK statement is not supported with GPU execution");
          +
          330  }
          +
          331  if (!in_mutex) {
          +
          332  logger->warn("SemanticAnalysisVisitor :: Found a MUTEXUNLOCK outside a locked part.");
          +
          333  }
          +
          334  in_mutex = false;
          +
          335  /// -->
          +
          336 }
          +
          337 
          +
          338 } // namespace visitor
          +
          339 } // namespace nmodl
          nmodl::ast::FunctionCall::get_node_name
          std::string get_node_name() const override
          Return name of the node.
          Definition: ast.cpp:7061
          nmodl::ast::AstNodeType::DERIVATIVE_BLOCK
          @ DERIVATIVE_BLOCK
          type of ast::DerivativeBlock
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_function_table_block
          void visit_function_table_block(const ast::FunctionTableBlock &node) override
          Visit function table to check that number of args > 0.
          Definition: semantic_analysis_visitor.cpp:282
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_function_table_block
          void visit_function_table_block(const ast::FunctionTableBlock &node) override
          Visit function table to check that number of args > 0.
          Definition: semantic_analysis_visitor.cpp:292
          nmodl::ast::AstNodeType::FUNCTION_BLOCK
          @ FUNCTION_BLOCK
          type of ast::FunctionBlock
          nmodl::ast::ProcedureBlock::get_parameters
          const ArgumentVector & get_parameters() const noexcept override
          Getter for member variable ProcedureBlock::parameters.
          Definition: procedure_block.hpp:201
          nmodl::ast::Name::visit_children
          void visit_children(visitor::Visitor &v) override
          visit children i.e.
          Definition: ast.cpp:795
          nmodl::visitor::SemanticAnalysisVisitor::check_name_conflict
          bool check_name_conflict(const ast::Program &node)
          Definition: semantic_analysis_visitor.cpp:56
          semantic_analysis_visitor.hpp
          Visitor to check some semantic rules on the AST
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_mutex_unlock
          void visit_mutex_unlock(const ast::MutexUnlock &node) override
          Look if MUTEXUNLOCK is outside a locked block.
          Definition: semantic_analysis_visitor.cpp:316
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_mutex_unlock
          void visit_mutex_unlock(const ast::MutexUnlock &node) override
          Look if MUTEXUNLOCK is outside a locked block.
          Definition: semantic_analysis_visitor.cpp:326
          nmodl::ast::FunctionTableBlock::get_parameters
          const ArgumentVector & get_parameters() const noexcept override
          Getter for member variable FunctionTableBlock::parameters.
          Definition: function_table_block.hpp:199
          nmodl::visitor::SemanticAnalysisVisitor::in_mutex
          bool in_mutex
          true if we are inside a mutex locked part
          Definition: semantic_analysis_visitor.hpp:61
          nmodl::visitor::SemanticAnalysisVisitor::in_function
          bool in_function
          true if we are in a function block
          Definition: semantic_analysis_visitor.hpp:57
          @@ -448,13 +458,13 @@
          nmodl::ast::TableStatement
          Represents TABLE statement in NMODL.
          Definition: table_statement.hpp:39
          symbol_properties.hpp
          Implement various classes to represent various Symbol properties.
          nmodl::ast::FunctionBlock::visit_children
          void visit_children(visitor::Visitor &v) override
          visit children i.e.
          Definition: ast.cpp:3976
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_protect_statement
          void visit_protect_statement(const ast::ProtectStatement &node) override
          Look if protect is inside a locked block.
          Definition: semantic_analysis_visitor.cpp:293
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_protect_statement
          void visit_protect_statement(const ast::ProtectStatement &node) override
          Look if protect is inside a locked block.
          Definition: semantic_analysis_visitor.cpp:303
          nmodl::ast::ProcedureBlock::visit_children
          void visit_children(visitor::Visitor &v) override
          visit children i.e.
          Definition: ast.cpp:4173
          nmodl::logger
          logger_type logger
          Definition: logger.cpp:34
          nmodl::is_random_construct_function
          bool is_random_construct_function(const std::string &name)
          Is given name a one of the function for RANDOM construct.
          Definition: visitor_utils.cpp:291
          nmodl::visitor::SemanticAnalysisVisitor::visit_name
          void visit_name(const ast::Name &node) override
          Only use of random_var is as first arg in random function.
          Definition: semantic_analysis_visitor.cpp:150
          procedure_block.hpp
          Auto generated AST classes declaration.
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_independent_block
          void visit_independent_block(const ast::IndependentBlock &node) override
          Visit independent block and check if one of the variable is not t.
          Definition: semantic_analysis_visitor.cpp:269
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_independent_block
          void visit_independent_block(const ast::IndependentBlock &node) override
          Visit independent block and check if one of the variable is not t.
          Definition: semantic_analysis_visitor.cpp:279
          nmodl::ast::Name::get_token
          const ModToken * get_token() const noexcept override
          Return associated token for the current ast node.
          Definition: name.hpp:141
          nmodl::ModToken::position
          std::string position() const
          Return position of the token as string.
          Definition: modtoken.cpp:14
          @@ -478,16 +488,17 @@
          nmodl::ast::MutexUnlock
          Represent MUTEXUNLOCK statement in NMODL.
          Definition: mutex_unlock.hpp:38
          nmodl::ast::AstNodeType::SUFFIX
          @ SUFFIX
          type of ast::Suffix
          +
          nmodl::is_nrn_pointing
          bool is_nrn_pointing(const std::string &name)
          Is given name nrn_pointing.
          Definition: visitor_utils.cpp:295
          nmodl::ast::Program::visit_children
          void visit_children(visitor::Visitor &v) override
          visit children i.e.
          Definition: ast.cpp:12902
          suffix.hpp
          Auto generated AST classes declaration.
          nmodl::ast::FunctionCall::get_arguments
          const ExpressionVector & get_arguments() const noexcept
          Getter for member variable FunctionCall::arguments.
          Definition: function_call.hpp:166
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_mutex_lock
          void visit_mutex_lock(const ast::MutexLock &node) override
          Look if MUTEXLOCK is inside a locked block.
          Definition: semantic_analysis_visitor.cpp:304
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_mutex_lock
          void visit_mutex_lock(const ast::MutexLock &node) override
          Look if MUTEXLOCK is inside a locked block.
          Definition: semantic_analysis_visitor.cpp:314
          nmodl::collect_nodes
          std::vector< std::shared_ptr< const ast::Ast > > collect_nodes(const ast::Ast &node, const std::vector< ast::AstNodeType > &types)
          traverse node recursively and collect nodes of given types
          Definition: visitor_utils.cpp:205
          function_block.hpp
          Auto generated AST classes declaration.
          function_call.hpp
          Auto generated AST classes declaration.
          nmodl::ast::TableStatement::get_table_vars
          const NameVector & get_table_vars() const noexcept
          Getter for member variable TableStatement::table_vars.
          Definition: table_statement.hpp:166
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_table_statement
          void visit_table_statement(const ast::TableStatement &node) override
          Visit a table statement and check that the arity of the block were 1.
          Definition: semantic_analysis_visitor.cpp:235
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_table_statement
          void visit_table_statement(const ast::TableStatement &node) override
          Visit a table statement and check that the arity of the block were 1.
          Definition: semantic_analysis_visitor.cpp:245
          nmodl::ast::FunctionCall::visit_children
          void visit_children(visitor::Visitor &v) override
          visit children i.e.
          Definition: ast.cpp:7068
          nmodl::ast::Name::get_node_name
          std::string get_node_name() const override
          Return name of the node.
          Definition: ast.cpp:791
          logger.hpp
          Implement logger based on spdlog library.
          @@ -500,7 +511,7 @@
          nmodl::ast::Name
          Represents a name.
          Definition: name.hpp:44
          nmodl::ast::Program
          Represents top level AST node for whole NMODL input.
          Definition: program.hpp:39
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_destructor_block
          void visit_destructor_block(const ast::DestructorBlock &node) override
          Visit destructor and check that the file is of type POINT_PROCESS or ARTIFICIAL_CELL.
          Definition: semantic_analysis_visitor.cpp:258
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_destructor_block
          void visit_destructor_block(const ast::DestructorBlock &node) override
          Visit destructor and check that the file is of type POINT_PROCESS or ARTIFICIAL_CELL.
          Definition: semantic_analysis_visitor.cpp:268
          table_statement.hpp
          Auto generated AST classes declaration.
          nmodl::visitor::SemanticAnalysisVisitor::visit_program
          void visit_program(const ast::Program &node) override
          Check number of DERIVATIVE blocks.
          Definition: semantic_analysis_visitor.cpp:121
          nmodl::symtab::SymbolTable::lookup
          std::shared_ptr< Symbol > lookup(const std::string &name) const
          check if symbol with given name exist in the current table (but not in parents)
          Definition: symbol_table.hpp:199
          diff --git a/doxygen/semantic__analysis__visitor_8hpp_source.html b/doxygen/semantic__analysis__visitor_8hpp_source.html index 403a68403..c4525f142 100644 --- a/doxygen/semantic__analysis__visitor_8hpp_source.html +++ b/doxygen/semantic__analysis__visitor_8hpp_source.html @@ -207,12 +207,12 @@
          111 } // namespace nmodl
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_function_table_block
          void visit_function_table_block(const ast::FunctionTableBlock &node) override
          Visit function table to check that number of args > 0.
          Definition: semantic_analysis_visitor.cpp:282
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_function_table_block
          void visit_function_table_block(const ast::FunctionTableBlock &node) override
          Visit function table to check that number of args > 0.
          Definition: semantic_analysis_visitor.cpp:292
          nmodl::visitor::ConstAstVisitor
          Concrete constant visitor for all AST classes.
          Definition: ast_visitor.hpp:166
          nmodl::visitor::SemanticAnalysisVisitor::check_name_conflict
          bool check_name_conflict(const ast::Program &node)
          Definition: semantic_analysis_visitor.cpp:56
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_mutex_unlock
          void visit_mutex_unlock(const ast::MutexUnlock &node) override
          Look if MUTEXUNLOCK is outside a locked block.
          Definition: semantic_analysis_visitor.cpp:316
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_mutex_unlock
          void visit_mutex_unlock(const ast::MutexUnlock &node) override
          Look if MUTEXUNLOCK is outside a locked block.
          Definition: semantic_analysis_visitor.cpp:326
          nmodl::visitor::SemanticAnalysisVisitor::in_mutex
          bool in_mutex
          true if we are inside a mutex locked part
          Definition: semantic_analysis_visitor.hpp:61
          nmodl::visitor::SemanticAnalysisVisitor::in_function
          bool in_function
          true if we are in a function block
          Definition: semantic_analysis_visitor.hpp:57
          @@ -221,9 +221,9 @@
          nmodl
          encapsulates code generation backend implementations
          Definition: ast_common.hpp:26
          nmodl::ast::MutexLock
          Represent MUTEXLOCK statement in NMODL.
          Definition: mutex_lock.hpp:38
          nmodl::ast::TableStatement
          Represents TABLE statement in NMODL.
          Definition: table_statement.hpp:39
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_protect_statement
          void visit_protect_statement(const ast::ProtectStatement &node) override
          Look if protect is inside a locked block.
          Definition: semantic_analysis_visitor.cpp:293
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_protect_statement
          void visit_protect_statement(const ast::ProtectStatement &node) override
          Look if protect is inside a locked block.
          Definition: semantic_analysis_visitor.cpp:303
          nmodl::visitor::SemanticAnalysisVisitor::visit_name
          void visit_name(const ast::Name &node) override
          Only use of random_var is as first arg in random function.
          Definition: semantic_analysis_visitor.cpp:150
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_independent_block
          void visit_independent_block(const ast::IndependentBlock &node) override
          Visit independent block and check if one of the variable is not t.
          Definition: semantic_analysis_visitor.cpp:269
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_independent_block
          void visit_independent_block(const ast::IndependentBlock &node) override
          Visit independent block and check if one of the variable is not t.
          Definition: semantic_analysis_visitor.cpp:279
          nmodl::visitor::SemanticAnalysisVisitor::in_procedure
          bool in_procedure
          true if we are in a procedure block
          Definition: semantic_analysis_visitor.hpp:55
          @@ -233,12 +233,12 @@
          nmodl::visitor::SemanticAnalysisVisitor::visit_procedure_block
          void visit_procedure_block(const ast::ProcedureBlock &node) override
          Store if we are in a procedure and if the arity of this is 1.
          Definition: semantic_analysis_visitor.cpp:132
          nmodl::ast::MutexUnlock
          Represent MUTEXUNLOCK statement in NMODL.
          Definition: mutex_unlock.hpp:38
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_mutex_lock
          void visit_mutex_lock(const ast::MutexLock &node) override
          Look if MUTEXLOCK is inside a locked block.
          Definition: semantic_analysis_visitor.cpp:304
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_mutex_lock
          void visit_mutex_lock(const ast::MutexLock &node) override
          Look if MUTEXLOCK is inside a locked block.
          Definition: semantic_analysis_visitor.cpp:314
          nmodl::symtab::SymbolTable
          Represent symbol table for a NMODL block.
          Definition: symbol_table.hpp:57
          ast.hpp
          Auto generated AST classes declaration.
          nmodl::visitor::SemanticAnalysisVisitor
          Visitor to check some semantic rules on the AST
          Definition: semantic_analysis_visitor.hpp:44
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_table_statement
          void visit_table_statement(const ast::TableStatement &node) override
          Visit a table statement and check that the arity of the block were 1.
          Definition: semantic_analysis_visitor.cpp:235
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_table_statement
          void visit_table_statement(const ast::TableStatement &node) override
          Visit a table statement and check that the arity of the block were 1.
          Definition: semantic_analysis_visitor.cpp:245
          nmodl::visitor::SemanticAnalysisVisitor::one_arg_in_procedure_function
          bool one_arg_in_procedure_function
          true if the procedure or the function contains only one argument
          Definition: semantic_analysis_visitor.hpp:53
          nmodl::visitor::SemanticAnalysisVisitor::visit_function_call
          void visit_function_call(const ast::FunctionCall &node) override
          random function first arg must be random_var
          Definition: semantic_analysis_visitor.cpp:205
          nmodl::visitor::SemanticAnalysisVisitor::is_point_process
          bool is_point_process
          true if the mod file is of type point process
          Definition: semantic_analysis_visitor.hpp:59
          @@ -246,7 +246,7 @@
          nmodl::visitor::SemanticAnalysisVisitor::visit_function_block
          void visit_function_block(const ast::FunctionBlock &node) override
          Store if we are in a function and if the arity of this is 1.
          Definition: semantic_analysis_visitor.cpp:141
          nmodl::ast::Name
          Represents a name.
          Definition: name.hpp:44
          nmodl::ast::Program
          Represents top level AST node for whole NMODL input.
          Definition: program.hpp:39
          -
          nmodl::visitor::SemanticAnalysisVisitor::visit_destructor_block
          void visit_destructor_block(const ast::DestructorBlock &node) override
          Visit destructor and check that the file is of type POINT_PROCESS or ARTIFICIAL_CELL.
          Definition: semantic_analysis_visitor.cpp:258
          +
          nmodl::visitor::SemanticAnalysisVisitor::visit_destructor_block
          void visit_destructor_block(const ast::DestructorBlock &node) override
          Visit destructor and check that the file is of type POINT_PROCESS or ARTIFICIAL_CELL.
          Definition: semantic_analysis_visitor.cpp:268
          nmodl::visitor::SemanticAnalysisVisitor::visit_program
          void visit_program(const ast::Program &node) override
          Check number of DERIVATIVE blocks.
          Definition: semantic_analysis_visitor.cpp:121
          ast_visitor.hpp
          Concrete visitor for all AST classes.
          diff --git a/doxygen/src_2codegen_2codegen__coreneuron__cpp__visitor_8cpp_source.html b/doxygen/src_2codegen_2codegen__coreneuron__cpp__visitor_8cpp_source.html index c8201d340..f823850d8 100644 --- a/doxygen/src_2codegen_2codegen__coreneuron__cpp__visitor_8cpp_source.html +++ b/doxygen/src_2codegen_2codegen__coreneuron__cpp__visitor_8cpp_source.html @@ -3181,8 +3181,8 @@
          nmodl::ast::Node
          Base class for all AST node.
          Definition: node.hpp:40
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_range_var_structure
          void print_mechanism_range_var_structure(bool print_initializers) override
          Print the structure that wraps all range and int variables required for the NMODL.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1494
          nmodl::codegen::IndexVariableInfo::is_index
          bool is_index
          if this is pure index (e.g.
          Definition: codegen_cpp_visitor.hpp:137
          -
          nmodl::codegen::naming::FOR_NETCON_VARIABLE
          static constexpr char FOR_NETCON_VARIABLE[]
          name of the integer variabe to store FOR_NETCON info.
          Definition: codegen_naming.hpp:141
          -
          nmodl::codegen::naming::CELSIUS_VARIABLE
          static constexpr char CELSIUS_VARIABLE[]
          global temperature variable
          Definition: codegen_naming.hpp:96
          +
          nmodl::codegen::naming::FOR_NETCON_VARIABLE
          static constexpr char FOR_NETCON_VARIABLE[]
          name of the integer variabe to store FOR_NETCON info.
          Definition: codegen_naming.hpp:144
          +
          nmodl::codegen::naming::CELSIUS_VARIABLE
          static constexpr char CELSIUS_VARIABLE[]
          global temperature variable
          Definition: codegen_naming.hpp:99
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buf_count_update_to_host
          virtual void print_net_send_buf_count_update_to_host() const
          Print the code to update NetSendBuffer_t count from device to host.
          Definition: codegen_coreneuron_cpp_visitor.cpp:159
          nmodl::ast::BATYPE_STEP
          @ BATYPE_STEP
          Definition: ast_common.hpp:80
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_function_prototypes
          void print_function_prototypes() override
          Print function and procedures prototype declaration.
          Definition: codegen_coreneuron_cpp_visitor.cpp:368
          @@ -3198,13 +3198,13 @@
          nmodl::codegen::CodegenCoreneuronCppVisitor::global_variable_name
          std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
          Determine the variable name for a global variable given its symbol.
          Definition: codegen_coreneuron_cpp_visitor.cpp:836
          nmodl::ast::BATYPE_INITIAL
          @ BATYPE_INITIAL
          Definition: ast_common.hpp:80
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_newtonspace_transfer_to_device
          virtual void print_newtonspace_transfer_to_device() const
          Print code block to transfer newtonspace structure to device.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2665
          -
          nmodl::codegen::naming::NRN_PRIVATE_DESTRUCTOR_METHOD
          constexpr char NRN_PRIVATE_DESTRUCTOR_METHOD[]
          nrn_private_destructor method in generated code
          Definition: codegen_naming.hpp:156
          +
          nmodl::codegen::naming::NRN_PRIVATE_DESTRUCTOR_METHOD
          constexpr char NRN_PRIVATE_DESTRUCTOR_METHOD[]
          nrn_private_destructor method in generated code
          Definition: codegen_naming.hpp:159
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_call
          void print_net_send_call(const ast::FunctionCall &node) override
          Print call to net_send.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2187
          -
          nmodl::codegen::naming::POINT_PROCESS_VARIABLE
          static constexpr char POINT_PROCESS_VARIABLE[]
          inbuilt neuron variable for point process
          Definition: codegen_naming.hpp:69
          +
          nmodl::codegen::naming::POINT_PROCESS_VARIABLE
          static constexpr char POINT_PROCESS_VARIABLE[]
          inbuilt neuron variable for point process
          Definition: codegen_naming.hpp:72
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_begin
          virtual void print_net_receive_loop_begin()
          Print the code for the main net_receive loop.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2379
          nmodl::ast::FunctionTableBlock::get_parameters
          const ArgumentVector & get_parameters() const noexcept override
          Getter for member variable FunctionTableBlock::parameters.
          Definition: function_table_block.hpp:199
          -
          nmodl::codegen::naming::NTHREAD_D_SHADOW
          static constexpr char NTHREAD_D_SHADOW[]
          shadow d variable in neuron thread structure
          Definition: codegen_naming.hpp:93
          +
          nmodl::codegen::naming::NTHREAD_D_SHADOW
          static constexpr char NTHREAD_D_SHADOW[]
          shadow d variable in neuron thread structure
          Definition: codegen_naming.hpp:96
          nmodl::codegen::CodegenCppVisitor::SymbolType
          std::shared_ptr< symtab::Symbol > SymbolType
          Definition: codegen_cpp_visitor.hpp:295
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_kernel_data_present_annotation_block_begin
          virtual void print_kernel_data_present_annotation_block_begin()
          Print accelerator annotations indicating data presence on device.
          Definition: codegen_coreneuron_cpp_visitor.cpp:198
          @@ -3228,7 +3228,7 @@
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init_acc_serial_annotation_block_end
          virtual void print_net_init_acc_serial_annotation_block_end()
          Print accelerator kernels end annotation for net_init kernel.
          Definition: codegen_coreneuron_cpp_visitor.cpp:213
          nmodl::codegen::CodegenCoreneuronCppVisitor::external_method_parameters
          const ParamVector external_method_parameters(bool table=false) noexcept override
          Parameters for functions in generated code that are called back from external code.
          Definition: codegen_coreneuron_cpp_visitor.cpp:507
          nmodl::codegen::Ion
          Represent ions used in mod file.
          Definition: codegen_info.hpp:53
          -
          nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
          static constexpr char NRN_CONSTRUCTOR_METHOD[]
          nrn_constructor method in generated code
          Definition: codegen_naming.hpp:147
          +
          nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
          static constexpr char NRN_CONSTRUCTOR_METHOD[]
          nrn_constructor method in generated code
          Definition: codegen_naming.hpp:150
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init
          void print_net_init()
          Print initial block in the net receive block.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2312
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_event_call
          void print_net_event_call(const ast::FunctionCall &node) override
          Print call to net_event.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2246
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_destructor
          void print_nrn_destructor() override
          Print nrn_destructor function definition.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1981
          @@ -3238,17 +3238,17 @@
          nmodl::codegen::CodegenCoreneuronCppVisitor::append_conc_write_statements
          void append_conc_write_statements(std::vector< ShadowUseStatement > &statements, const Ion &ion, const std::string &concentration) override
          Generate Function call statement for nrn_wrote_conc.
          Definition: codegen_coreneuron_cpp_visitor.cpp:622
          nmodl::codegen::get_prefixsum_from_name
          int get_prefixsum_from_name(const std::vector< T > &variables, const std::string &name)
          Definition: codegen_cpp_visitor.hpp:202
          nmodl::codegen::Ion::name
          std::string name
          name of the ion
          Definition: codegen_info.hpp:55
          -
          nmodl::codegen::naming::NTHREAD_DT_VARIABLE
          static constexpr char NTHREAD_DT_VARIABLE[]
          dt variable in neuron thread structure
          Definition: codegen_naming.hpp:105
          +
          nmodl::codegen::naming::NTHREAD_DT_VARIABLE
          static constexpr char NTHREAD_DT_VARIABLE[]
          dt variable in neuron thread structure
          Definition: codegen_naming.hpp:108
          token_mapping.hpp
          Map different tokens from lexer to token types.
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_atomic_reduction_pragma
          void print_atomic_reduction_pragma() override
          Print atomic update pragma for reduction statements.
          Definition: codegen_coreneuron_cpp_visitor.cpp:295
          var_usage_visitor.hpp
          Check if variable is used in given block.
          string_utils.hpp
          Implement string manipulation functions.
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_variables_for_hoc
          void print_global_variables_for_hoc() override
          Print byte arrays that register scalar and vector variables for hoc interface.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1186
          -
          nmodl::codegen::naming::NODE_AREA_VARIABLE
          static constexpr char NODE_AREA_VARIABLE[]
          inbuilt neuron variable for area of the compartment
          Definition: codegen_naming.hpp:63
          +
          nmodl::codegen::naming::NODE_AREA_VARIABLE
          static constexpr char NODE_AREA_VARIABLE[]
          inbuilt neuron variable for area of the compartment
          Definition: codegen_naming.hpp:66
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_common_code
          void print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)
          Print the common code section for net receive related methods.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2136
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_current
          void print_nrn_current(const ast::BreakpointBlock &node) override
          Print the nrn_current kernel.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2730
          nmodl::ast::Ast::is_function_block
          virtual bool is_function_block() const noexcept
          Check if the ast node is an instance of ast::FunctionBlock.
          Definition: ast.cpp:142
          -
          nmodl::codegen::naming::NRN_ALLOC_METHOD
          static constexpr char NRN_ALLOC_METHOD[]
          nrn_alloc method in generated code
          Definition: codegen_naming.hpp:159
          +
          nmodl::codegen::naming::NRN_ALLOC_METHOD
          static constexpr char NRN_ALLOC_METHOD[]
          nrn_alloc method in generated code
          Definition: codegen_naming.hpp:162
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_function_table_call
          void print_function_table_call(const ast::FunctionCall &node) override
          Print special code when calling FUNCTION_TABLEs.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2261
          nmodl::codegen::IndexVariableInfo::is_integer
          bool is_integer
          if this is an integer (e.g.
          Definition: codegen_cpp_visitor.hpp:141
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_first_pointer_var_index_getter
          void print_first_pointer_var_index_getter()
          Print the getter method for index position of first pointer variable.
          Definition: codegen_coreneuron_cpp_visitor.cpp:668
          @@ -3271,18 +3271,18 @@
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init_acc_serial_annotation_block_begin
          virtual void print_net_init_acc_serial_annotation_block_begin()
          Print accelerator kernels begin annotation for net_init kernel.
          Definition: codegen_coreneuron_cpp_visitor.cpp:208
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_deriv_advance_flag_transfer_to_device
          virtual void print_deriv_advance_flag_transfer_to_device() const
          Print the code to copy derivative advance flag to device.
          Definition: codegen_coreneuron_cpp_visitor.cpp:149
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_first_random_var_index_getter
          void print_first_random_var_index_getter()
          Print the getter method for index position of first RANDOM variable.
          Definition: codegen_coreneuron_cpp_visitor.cpp:676
          -
          nmodl::codegen::naming::NTHREAD_RHS_SHADOW
          static constexpr char NTHREAD_RHS_SHADOW[]
          shadow rhs variable in neuron thread structure
          Definition: codegen_naming.hpp:90
          +
          nmodl::codegen::naming::NTHREAD_RHS_SHADOW
          static constexpr char NTHREAD_RHS_SHADOW[]
          shadow rhs variable in neuron thread structure
          Definition: codegen_naming.hpp:93
          visitor_utils.hpp
          Utility functions for visitors implementation.
          nmodl::codegen::BlockType::Equation
          @ Equation
          breakpoint block
          -
          nmodl::codegen::naming::USE_TABLE_VARIABLE
          static constexpr char USE_TABLE_VARIABLE[]
          global variable to indicate if table is used
          Definition: codegen_naming.hpp:78
          +
          nmodl::codegen::naming::USE_TABLE_VARIABLE
          static constexpr char USE_TABLE_VARIABLE[]
          global variable to indicate if table is used
          Definition: codegen_naming.hpp:81
          nmodl::ast::WatchStatement
          Represent WATCH statement in NMODL.
          Definition: watch_statement.hpp:39
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_before_after_block
          virtual void print_before_after_block(const ast::Block *node, size_t block_id)
          Print NMODL before / after block in target backend code.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1915
          nmodl::ast::BreakpointBlock
          Represents a BREAKPOINT block in NMODL.
          Definition: breakpoint_block.hpp:53
          driver
          nmodl::parser::UnitDriver driver
          Definition: parser.cpp:28
          -
          nmodl::codegen::regex_special_chars
          const std::regex regex_special_chars
          Definition: codegen_cpp_visitor.cpp:849
          +
          nmodl::codegen::regex_special_chars
          const std::regex regex_special_chars
          Definition: codegen_cpp_visitor.cpp:859
          codegen_coreneuron_cpp_visitor.hpp
          Visitor for printing C++ code compatible with legacy api of CoreNEURON
          -
          nmodl::codegen::naming::VERBATIM_VARIABLES_MAPPING
          static const std::unordered_map< std::string, std::string > VERBATIM_VARIABLES_MAPPING
          commonly used variables in verbatim block and how they should be mapped to new code generation backen...
          Definition: codegen_naming.hpp:185
          +
          nmodl::codegen::naming::VERBATIM_VARIABLES_MAPPING
          static const std::unordered_map< std::string, std::string > VERBATIM_VARIABLES_MAPPING
          commonly used variables in verbatim block and how they should be mapped to new code generation backen...
          Definition: codegen_naming.hpp:188
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_variable
          void print_ion_variable() override
          Print the ion variable struct.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1583
          nmodl::codegen::BlockType::Constructor
          @ Constructor
          constructor block
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_structure
          void print_ion_var_structure()
          Print structure of ion variables used for local copies.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1536
          @@ -3305,19 +3305,19 @@
          nmodl::codegen::BlockType::NetReceive
          @ NetReceive
          net_receive block
          nmodl::codegen::Ion::is_extra_cell_conc
          bool is_extra_cell_conc(const std::string &text) const
          Check if variable name is external cell concentration.
          Definition: codegen_info.hpp:144
          nmodl::codegen::CodegenCoreneuronCppVisitor::backend_name
          std::string backend_name() const override
          Name of the code generation backend.
          Definition: codegen_coreneuron_cpp_visitor.cpp:53
          -
          nmodl::codegen::naming::NRN_INIT_METHOD
          static constexpr char NRN_INIT_METHOD[]
          nrn_init method in generated code
          Definition: codegen_naming.hpp:144
          +
          nmodl::codegen::naming::NRN_INIT_METHOD
          static constexpr char NRN_INIT_METHOD[]
          nrn_init method in generated code
          Definition: codegen_naming.hpp:147
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_rhs_d_shadow_variables
          virtual void print_rhs_d_shadow_variables()
          Print the setup method for setting matrix shadow vectors.
          Definition: codegen_coreneuron_cpp_visitor.cpp:258
          nmodl::ast::FunctionCall::get_arguments
          const ExpressionVector & get_arguments() const noexcept
          Getter for member variable FunctionCall::arguments.
          Definition: function_call.hpp:166
          nmodl::codegen::CodegenCoreneuronCppVisitor::process_verbatim_text
          std::string process_verbatim_text(std::string const &text) override
          Process a verbatim block for possible variable renaming.
          Definition: codegen_coreneuron_cpp_visitor.cpp:584
          -
          nmodl::codegen::naming::THREAD_ARGS
          static constexpr char THREAD_ARGS[]
          verbatim name of the variable for nrn thread arguments
          Definition: codegen_naming.hpp:174
          +
          nmodl::codegen::naming::THREAD_ARGS
          static constexpr char THREAD_ARGS[]
          verbatim name of the variable for nrn thread arguments
          Definition: codegen_naming.hpp:177
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive
          void print_net_receive()
          Print net_receive function definition.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2535
          nmodl::codegen::rename_net_receive_arguments
          static void rename_net_receive_arguments(const ast::NetReceiveBlock &net_receive_node, const ast::Node &node)
          Rename arguments to NET_RECEIVE block with corresponding pointer variable.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2299
          nmodl::codegen::CodegenCoreneuronCppVisitor::optimize_ion_variable_copies
          bool optimize_ion_variable_copies() const override
          Check if ion variable copies should be avoided.
          Definition: codegen_coreneuron_cpp_visitor.cpp:310
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_top_verbatim_blocks
          void print_top_verbatim_blocks()
          Print top level (global scope) verbatim blocks.
          Definition: codegen_coreneuron_cpp_visitor.cpp:346
          nmodl::visitor::RenameVisitor
          Blindly rename given variable to new name
          Definition: rename_visitor.hpp:43
          -
          nmodl::codegen::naming::NRN_CUR_METHOD
          static constexpr char NRN_CUR_METHOD[]
          nrn_cur method in generated code
          Definition: codegen_naming.hpp:165
          +
          nmodl::codegen::naming::NRN_CUR_METHOD
          static constexpr char NRN_CUR_METHOD[]
          nrn_cur method in generated code
          Definition: codegen_naming.hpp:168
          codegen_utils.hpp
          Implement utility functions for codegen visitors.
          -
          nmodl::codegen::naming::TQITEM_VARIABLE
          static constexpr char TQITEM_VARIABLE[]
          inbuilt neuron variable for tqitem process
          Definition: codegen_naming.hpp:72
          +
          nmodl::codegen::naming::TQITEM_VARIABLE
          static constexpr char TQITEM_VARIABLE[]
          inbuilt neuron variable for tqitem process
          Definition: codegen_naming.hpp:75
          nmodl::visitor::RenameVisitor::set
          void set(const std::string &old_name, std::string new_name)
          Definition: rename_visitor.hpp:97
          nmodl::collect_nodes
          std::vector< std::shared_ptr< const ast::Ast > > collect_nodes(const ast::Ast &node, const std::vector< ast::AstNodeType > &types)
          traverse node recursively and collect nodes of given types
          Definition: visitor_utils.cpp:205
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_global_var_structure
          void print_mechanism_global_var_structure(bool print_initializers) override
          Print the structure that wraps all global variables used in the NMODL.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1042
          @@ -3329,7 +3329,7 @@
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_matrix_shadow_reduction
          virtual void print_nrn_cur_matrix_shadow_reduction()
          Print the reduction to matrix elements from shadow vectors.
          Definition: codegen_coreneuron_cpp_visitor.cpp:279
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_memb_list_getter
          void print_memb_list_getter()
          Print the getter method for returning membrane list from NrnThread.
          Definition: codegen_coreneuron_cpp_visitor.cpp:717
          -
          nmodl::codegen::naming::INST_GLOBAL_MEMBER
          static constexpr char INST_GLOBAL_MEMBER[]
          instance struct member pointing to the global variable structure
          Definition: codegen_naming.hpp:99
          +
          nmodl::codegen::naming::INST_GLOBAL_MEMBER
          static constexpr char INST_GLOBAL_MEMBER[]
          instance struct member pointing to the global variable structure
          Definition: codegen_naming.hpp:102
          nmodl::ast::AstNodeType::PROTECT_STATEMENT
          @ PROTECT_STATEMENT
          type of ast::ProtectStatement
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_variable_setup
          void print_instance_variable_setup()
          Print the function that initialize instance structure.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1630
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_init
          void print_nrn_init(bool skip_init_check=true)
          Print the nrn_init function definition.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1840
          @@ -3353,7 +3353,7 @@
          nmodl::codegen::BlockType
          BlockType
          Helper to represent various block types.
          Definition: codegen_cpp_visitor.hpp:56
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_register
          void print_mechanism_register() override
          Print the mechanism registration function.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1293
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_method_annotation
          virtual void print_global_method_annotation()
          Print backend specific global method annotation.
          Definition: codegen_coreneuron_cpp_visitor.cpp:300
          -
          nmodl::codegen::naming::NRN_STATE_METHOD
          static constexpr char NRN_STATE_METHOD[]
          nrn_state method in generated code
          Definition: codegen_naming.hpp:162
          +
          nmodl::codegen::naming::NRN_STATE_METHOD
          static constexpr char NRN_STATE_METHOD[]
          nrn_state method in generated code
          Definition: codegen_naming.hpp:165
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_kernel
          void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
          Print main body of nrn_cur function.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2819
          config.h
          Version information and units file path.
          nmodl::codegen::CodegenCoreneuronCppVisitor::nrn_thread_internal_arguments
          std::string nrn_thread_internal_arguments() override
          Arguments for "_threadargs_" macro in neuron implementation.
          Definition: codegen_coreneuron_cpp_visitor.cpp:537
          @@ -3368,7 +3368,7 @@
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_mech_type_getter
          void print_mech_type_getter()
          Print the getter method for returning mechtype.
          Definition: codegen_coreneuron_cpp_visitor.cpp:708
          nmodl::ast::AfterBlock
          Represents a AFTER block in NMODL.
          Definition: after_block.hpp:51
          nmodl::ast::Ast::is_before_block
          virtual bool is_before_block() const noexcept
          Check if the ast node is an instance of ast::BeforeBlock.
          Definition: ast.cpp:152
          -
          nmodl::codegen::naming::NTHREAD_T_VARIABLE
          static constexpr char NTHREAD_T_VARIABLE[]
          t variable in neuron thread structure
          Definition: codegen_naming.hpp:102
          +
          nmodl::codegen::naming::NTHREAD_T_VARIABLE
          static constexpr char NTHREAD_T_VARIABLE[]
          t variable in neuron thread structure
          Definition: codegen_naming.hpp:105
          nmodl::codegen::CodegenCoreneuronCppVisitor::float_variable_name
          std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
          Determine the name of a float variable given its symbol.
          Definition: codegen_coreneuron_cpp_visitor.cpp:792
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_variable_device_update_annotation
          virtual void print_global_variable_device_update_annotation()
          Print the pragma annotation to update global variables from host to the device.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1588
          rename_visitor.hpp
          Blindly rename given variable to new name
          @@ -3383,14 +3383,14 @@
          nmodl::codegen::CodegenCoreneuronCppVisitor::process_verbatim_token
          std::string process_verbatim_token(const std::string &token)
          Process a token in a verbatim block for possible variable renaming.
          Definition: codegen_coreneuron_cpp_visitor.cpp:82
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_state
          void print_nrn_state() override
          Print nrn_state / state update function definition.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2675
          nmodl::codegen::CodegenCoreneuronCppVisitor::add_variable_point_process
          void add_variable_point_process(std::vector< IndexVariableInfo > &variables) override
          Add the variable point_process during get_int_variables.
          Definition: codegen_coreneuron_cpp_visitor.cpp:466
          -
          nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
          static constexpr char NRN_DESTRUCTOR_METHOD[]
          nrn_destructor method in generated code
          Definition: codegen_naming.hpp:150
          +
          nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
          static constexpr char NRN_DESTRUCTOR_METHOD[]
          nrn_destructor method in generated code
          Definition: codegen_naming.hpp:153
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_codegen_routines
          void print_codegen_routines() override
          Print entry point to code generation.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2998
          nmodl::codegen::BlockType::Initial
          @ Initial
          initial block
          -
          nmodl::codegen::naming::THREAD_ARGS_PROTO
          static constexpr char THREAD_ARGS_PROTO[]
          verbatim name of the variable for nrn thread arguments in prototype
          Definition: codegen_naming.hpp:177
          +
          nmodl::codegen::naming::THREAD_ARGS_PROTO
          static constexpr char THREAD_ARGS_PROTO[]
          verbatim name of the variable for nrn thread arguments in prototype
          Definition: codegen_naming.hpp:180
          nmodl::codegen::BlockType::BeforeAfter
          @ BeforeAfter
          before / after block
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_grow
          virtual void print_net_send_buffering_grow()
          Print statement that grows NetSendBuffering_t structure if needed.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2442
          -
          nmodl::codegen::naming::NRN_PRIVATE_CONSTRUCTOR_METHOD
          constexpr char NRN_PRIVATE_CONSTRUCTOR_METHOD[]
          nrn_private_constructor method in generated code
          Definition: codegen_naming.hpp:153
          +
          nmodl::codegen::naming::NRN_PRIVATE_CONSTRUCTOR_METHOD
          constexpr char NRN_PRIVATE_CONSTRUCTOR_METHOD[]
          nrn_private_constructor method in generated code
          Definition: codegen_naming.hpp:156
          nmodl::ast::Ast::get_node_name
          virtual std::string get_node_name() const
          Return name of of the node.
          Definition: ast.cpp:28
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buf_update_to_host
          virtual void print_net_send_buf_update_to_host() const
          Print the code to update NetSendBuffer_t from device to host.
          Definition: codegen_coreneuron_cpp_visitor.cpp:164
          all.hpp
          Auto generated AST classes declaration.
          @@ -3399,7 +3399,7 @@
          nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_constructor
          virtual void print_ion_var_constructor(const std::vector< std::string > &members)
          Print constructor of ion variables.
          Definition: codegen_coreneuron_cpp_visitor.cpp:1566
          nmodl::codegen::CodegenCoreneuronCppVisitor::position_of_float_var
          int position_of_float_var(const std::string &name) const override
          Determine the position in the data array for a given float variable.
          Definition: codegen_coreneuron_cpp_visitor.cpp:68
          nmodl::codegen::CodegenCppVisitor::ParamVector
          std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
          A vector of parameters represented by a 4-tuple of strings:
          Definition: codegen_cpp_visitor.hpp:307
          -
          nmodl::codegen::naming::ION_VARNAME_PREFIX
          static constexpr char ION_VARNAME_PREFIX[]
          prefix for ion variable
          Definition: codegen_naming.hpp:180
          +
          nmodl::codegen::naming::ION_VARNAME_PREFIX
          static constexpr char ION_VARNAME_PREFIX[]
          prefix for ion variable
          Definition: codegen_naming.hpp:183
          nmodl::ast::FunctionCall::get_node_name
          std::string get_node_name() const override
          Return name of the node.
          Definition: ast.cpp:7061
          -
          nmodl::codegen::naming::RANDOM_SEMANTIC
          static constexpr char RANDOM_SEMANTIC[]
          semantic type for RANDOM variable
          Definition: codegen_naming.hpp:129
          +
          nmodl::codegen::naming::RANDOM_SEMANTIC
          static constexpr char RANDOM_SEMANTIC[]
          semantic type for RANDOM variable
          Definition: codegen_naming.hpp:132
          nmodl::stringutils::starts_with
          static bool starts_with(const std::string &haystack, const std::string &needle)
          Check if haystack starts with needle.
          Definition: string_utils.hpp:154
          nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_destructor
          void print_nrn_destructor() override
          Print nrn_destructor function definition.
          Definition: codegen_neuron_cpp_visitor.cpp:1726
          nmodl::codegen::CodegenNeuronCppVisitor::print_callable_preamble_from_prop
          void print_callable_preamble_from_prop()
          Print the set of common variables from a Prop only.
          Definition: codegen_neuron_cpp_visitor.cpp:1683
          @@ -2621,11 +2621,11 @@
          nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur
          void print_nrn_cur() override
          Print nrn_cur / current update function definition.
          Definition: codegen_neuron_cpp_visitor.cpp:2088
          nmodl::codegen::CodegenNeuronCppVisitor::print_macro_definitions
          void print_macro_definitions()
          Print all NEURON macros.
          Definition: codegen_neuron_cpp_visitor.cpp:2144
          nmodl::codegen::CodegenNeuronCppVisitor::print_net_event_call
          void print_net_event_call(const ast::FunctionCall &node) override
          Print call to net_event.
          Definition: codegen_neuron_cpp_visitor.cpp:2333
          -
          nmodl::codegen::naming::POINT_PROCESS_VARIABLE
          static constexpr char POINT_PROCESS_VARIABLE[]
          inbuilt neuron variable for point process
          Definition: codegen_naming.hpp:69
          +
          nmodl::codegen::naming::POINT_PROCESS_VARIABLE
          static constexpr char POINT_PROCESS_VARIABLE[]
          inbuilt neuron variable for point process
          Definition: codegen_naming.hpp:72
          nmodl::ast::FunctionTableBlock::get_parameters
          const ArgumentVector & get_parameters() const noexcept override
          Getter for member variable FunctionTableBlock::parameters.
          Definition: function_table_block.hpp:199
          nmodl::codegen::CodegenNeuronCppVisitor::print_neuron_includes
          void print_neuron_includes()
          Print includes from NEURON.
          Definition: codegen_neuron_cpp_visitor.cpp:785
          -
          nmodl::codegen::naming::NRN_JACOB_METHOD
          static constexpr char NRN_JACOB_METHOD[]
          nrn_jacob method in generated code
          Definition: codegen_naming.hpp:168
          +
          nmodl::codegen::naming::NRN_JACOB_METHOD
          static constexpr char NRN_JACOB_METHOD[]
          nrn_jacob method in generated code
          Definition: codegen_naming.hpp:171
          nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_init
          void print_nrn_init(bool skip_init_check=true)
          Print the nrn_init function definition.
          Definition: codegen_neuron_cpp_visitor.cpp:1616
          nmodl::codegen::CodegenNeuronCppVisitor::print_hoc_py_wrapper_function_body
          void print_hoc_py_wrapper_function_body(const ast::Block *function_or_procedure_block, InterpreterWrapper wrapper_type)
          Definition: codegen_neuron_cpp_visitor.cpp:287
          @@ -2646,14 +2646,14 @@
          nmodl::codegen::CodegenNeuronCppVisitor::global_variable_name
          std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
          Determine the variable name for a global variable given its symbol.
          Definition: codegen_neuron_cpp_visitor.cpp:666
          nmodl::codegen::Ion
          Represent ions used in mod file.
          Definition: codegen_info.hpp:53
          nmodl::codegen::CodegenNeuronCppVisitor::nrn_thread_internal_arguments
          std::string nrn_thread_internal_arguments() override
          Arguments for "_threadargs_" macro in neuron implementation.
          Definition: codegen_neuron_cpp_visitor.cpp:501
          -
          nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
          static constexpr char NRN_CONSTRUCTOR_METHOD[]
          nrn_constructor method in generated code
          Definition: codegen_naming.hpp:147
          +
          nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
          static constexpr char NRN_CONSTRUCTOR_METHOD[]
          nrn_constructor method in generated code
          Definition: codegen_naming.hpp:150
          codegen_neuron_cpp_visitor.hpp
          Visitor for printing C++ code compatible with legacy api of NEURON
          nmodl::codegen::CodegenNeuronCppVisitor::backend_name
          std::string backend_name() const override
          Name of the code generation backend.
          Definition: codegen_neuron_cpp_visitor.cpp:50
          nmodl::codegen::CodegenNeuronCppVisitor::process_verbatim_text
          std::string process_verbatim_text(std::string const &text) override
          Process a verbatim block for possible variable renaming.
          Definition: codegen_neuron_cpp_visitor.cpp:516
          nmodl::codegen::CodegenNeuronCppVisitor::print_global_param_default_values
          void print_global_param_default_values()
          Print global struct with default value of RANGE PARAMETERs.
          Definition: codegen_neuron_cpp_visitor.cpp:1030
          nmodl::codegen::Ion::name
          std::string name
          name of the ion
          Definition: codegen_info.hpp:55
          -
          nmodl::codegen::naming::NTHREAD_DT_VARIABLE
          static constexpr char NTHREAD_DT_VARIABLE[]
          dt variable in neuron thread structure
          Definition: codegen_naming.hpp:105
          +
          nmodl::codegen::naming::NTHREAD_DT_VARIABLE
          static constexpr char NTHREAD_DT_VARIABLE[]
          dt variable in neuron thread structure
          Definition: codegen_naming.hpp:108
          nmodl::codegen::CodegenNeuronCppVisitor::print_g_unused
          void print_g_unused() const override
          Set g_unused (conductance) for NRN_PRCELLSTATE feature.
          Definition: codegen_neuron_cpp_visitor.cpp:2232
          nmodl::codegen::CodegenNeuronCppVisitor::visit_watch_statement
          void visit_watch_statement(const ast::WatchStatement &node) override
          TODO: Edit for NEURON.
          Definition: codegen_neuron_cpp_visitor.cpp:2454
          nmodl::codegen::CodegenNeuronCppVisitor::print_net_send_call
          void print_net_send_call(const ast::FunctionCall &node) override
          Print call to net_send.
          Definition: codegen_neuron_cpp_visitor.cpp:2295
          @@ -2661,10 +2661,10 @@
          string_utils.hpp
          Implement string manipulation functions.
          nmodl::codegen::CodegenNeuronCppVisitor::print_net_move_call
          void print_net_move_call(const ast::FunctionCall &node) override
          Print call to net_move.
          Definition: codegen_neuron_cpp_visitor.cpp:2320
          nmodl::codegen::CodegenNeuronCppVisitor::thread_variable_name
          std::string thread_variable_name(const ThreadVariableInfo &var_info, bool use_instance=true) const
          Determine the C++ string to print for thread variables.
          Definition: codegen_neuron_cpp_visitor.cpp:645
          -
          nmodl::codegen::naming::NODE_AREA_VARIABLE
          static constexpr char NODE_AREA_VARIABLE[]
          inbuilt neuron variable for area of the compartment
          Definition: codegen_naming.hpp:63
          +
          nmodl::codegen::naming::NODE_AREA_VARIABLE
          static constexpr char NODE_AREA_VARIABLE[]
          inbuilt neuron variable for area of the compartment
          Definition: codegen_naming.hpp:66
          nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_state
          void print_nrn_state() override
          Print nrn_state / state update function definition.
          Definition: codegen_neuron_cpp_visitor.cpp:1882
          nmodl::ast::Ast::is_function_block
          virtual bool is_function_block() const noexcept
          Check if the ast node is an instance of ast::FunctionBlock.
          Definition: ast.cpp:142
          -
          nmodl::codegen::naming::NRN_ALLOC_METHOD
          static constexpr char NRN_ALLOC_METHOD[]
          nrn_alloc method in generated code
          Definition: codegen_naming.hpp:159
          +
          nmodl::codegen::naming::NRN_ALLOC_METHOD
          static constexpr char NRN_ALLOC_METHOD[]
          nrn_alloc method in generated code
          Definition: codegen_naming.hpp:162
          nmodl::codegen::CodegenNeuronCppVisitor::print_initial_block
          void print_initial_block(const ast::InitialBlock *node)
          Print the initial block.
          Definition: codegen_neuron_cpp_visitor.cpp:1571
          nmodl::codegen::IndexVariableInfo::is_integer
          bool is_integer
          if this is an integer (e.g.
          Definition: codegen_cpp_visitor.hpp:141
          nmodl::codegen::CodegenNeuronCppVisitor::print_global_function_common_code
          void print_global_function_common_code(BlockType type, const std::string &function_name="") override
          Print common code for global functions like nrn_init, nrn_cur and nrn_state.
          Definition: codegen_neuron_cpp_visitor.cpp:1593
          @@ -2675,7 +2675,7 @@
          nmodl::codegen::Ion::rev_potential_pointer_name
          std::string rev_potential_pointer_name() const
          Definition: codegen_info.hpp:202
          nmodl::codegen::CodegenNeuronCppVisitor::print_v_unused
          void print_v_unused() const override
          Set v_unused (voltage) for NRN_PRCELLSTATE feature.
          Definition: codegen_neuron_cpp_visitor.cpp:2220
          -
          nmodl::codegen::naming::CONDUCTANCE_VARIABLE
          static constexpr char CONDUCTANCE_VARIABLE[]
          range variable for conductance
          Definition: codegen_naming.hpp:75
          +
          nmodl::codegen::naming::CONDUCTANCE_VARIABLE
          static constexpr char CONDUCTANCE_VARIABLE[]
          range variable for conductance
          Definition: codegen_naming.hpp:78
          nmodl::codegen::CodegenNeuronCppVisitor::functor_params
          ParamVector functor_params() override
          The parameters of the Newton solver "functor".
          Definition: codegen_neuron_cpp_visitor.cpp:837
          codegen_cpp_visitor.hpp
          Visitor for printing C++ code compatible with legacy api of CoreNEURON
          codegen_naming.hpp
          @@ -2687,7 +2687,7 @@
          visitor_utils.hpp
          Utility functions for visitors implementation.
          nmodl::codegen::CodegenNeuronCppVisitor::print_net_init
          void print_net_init()
          Print NET_RECEIVE{ INITIAL{ ...
          Definition: codegen_neuron_cpp_visitor.cpp:2426
          nmodl::codegen::BlockType::Equation
          @ Equation
          breakpoint block
          -
          nmodl::codegen::naming::USE_TABLE_VARIABLE
          static constexpr char USE_TABLE_VARIABLE[]
          global variable to indicate if table is used
          Definition: codegen_naming.hpp:78
          +
          nmodl::codegen::naming::USE_TABLE_VARIABLE
          static constexpr char USE_TABLE_VARIABLE[]
          global variable to indicate if table is used
          Definition: codegen_naming.hpp:81
          nmodl::ast::WatchStatement
          Represent WATCH statement in NMODL.
          Definition: watch_statement.hpp:39
          nmodl::codegen::CodegenNeuronCppVisitor::print_neuron_global_variable_declarations
          void print_neuron_global_variable_declarations()
          Print extern declarations for neuron global variables.
          Definition: codegen_neuron_cpp_visitor.cpp:1390
          nmodl::ast::BreakpointBlock
          Represents a BREAKPOINT block in NMODL.
          Definition: breakpoint_block.hpp:53
          @@ -2707,17 +2707,17 @@
          nmodl::symtab::syminfo::to_string
          std::string to_string(const T &obj)
          Definition: symbol_properties.hpp:279
          nmodl::codegen::CodegenNeuronCppVisitor::print_function_table_call
          void print_function_table_call(const ast::FunctionCall &node) override
          Print special code when calling FUNCTION_TABLEs.
          Definition: codegen_neuron_cpp_visitor.cpp:2339
          nmodl::codegen::CodegenNeuronCppVisitor::print_compute_functions
          void print_compute_functions() override
          Print all compute functions for every backend.
          Definition: codegen_neuron_cpp_visitor.cpp:2241
          -
          nmodl::codegen::naming::NRN_INIT_METHOD
          static constexpr char NRN_INIT_METHOD[]
          nrn_init method in generated code
          Definition: codegen_naming.hpp:144
          +
          nmodl::codegen::naming::NRN_INIT_METHOD
          static constexpr char NRN_INIT_METHOD[]
          nrn_init method in generated code
          Definition: codegen_naming.hpp:147
          nmodl::ast::FunctionCall::get_arguments
          const ExpressionVector & get_arguments() const noexcept
          Getter for member variable FunctionCall::arguments.
          Definition: function_call.hpp:166
          -
          nmodl::codegen::naming::POINTER_SEMANTIC
          static constexpr char POINTER_SEMANTIC[]
          semantic type for pointer variable
          Definition: codegen_naming.hpp:123
          +
          nmodl::codegen::naming::POINTER_SEMANTIC
          static constexpr char POINTER_SEMANTIC[]
          semantic type for pointer variable
          Definition: codegen_naming.hpp:126
          nmodl::codegen::CodegenNeuronCppVisitor::print_thread_memory_callbacks
          void print_thread_memory_callbacks()
          Print thread variable (de-)initialization functions.
          Definition: codegen_neuron_cpp_visitor.cpp:1356
          nmodl::codegen::rename_net_receive_arguments
          static void rename_net_receive_arguments(const ast::NetReceiveBlock &net_receive_node, const ast::Node &node)
          Rename arguments to NET_RECEIVE block with corresponding pointer variable.
          Definition: codegen_coreneuron_cpp_visitor.cpp:2299
          nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_cur_kernel
          void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
          Print main body of nrn_cur function.
          Definition: codegen_neuron_cpp_visitor.cpp:2049
          nmodl::visitor::RenameVisitor
          Blindly rename given variable to new name
          Definition: rename_visitor.hpp:43
          -
          nmodl::codegen::naming::NRN_CUR_METHOD
          static constexpr char NRN_CUR_METHOD[]
          nrn_cur method in generated code
          Definition: codegen_naming.hpp:165
          +
          nmodl::codegen::naming::NRN_CUR_METHOD
          static constexpr char NRN_CUR_METHOD[]
          nrn_cur method in generated code
          Definition: codegen_naming.hpp:168
          nmodl::codegen::CodegenNeuronCppVisitor::print_mechanism_register
          void print_mechanism_register() override
          Print the mechanism registration function.
          Definition: codegen_neuron_cpp_visitor.cpp:1162
          codegen_utils.hpp
          Implement utility functions for codegen visitors.
          -
          nmodl::codegen::naming::TQITEM_VARIABLE
          static constexpr char TQITEM_VARIABLE[]
          inbuilt neuron variable for tqitem process
          Definition: codegen_naming.hpp:72
          +
          nmodl::codegen::naming::TQITEM_VARIABLE
          static constexpr char TQITEM_VARIABLE[]
          inbuilt neuron variable for tqitem process
          Definition: codegen_naming.hpp:75
          nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_jacob
          void print_nrn_jacob()
          Print nrn_jacob function definition.
          Definition: codegen_neuron_cpp_visitor.cpp:1649
          @@ -2730,7 +2730,7 @@
          nmodl::codegen::ThreadVariableInfo::offset
          size_t offset
          The global variables ahead of this one require offset doubles to store.
          Definition: codegen_neuron_cpp_visitor.hpp:71
          nmodl::codegen::CodegenNeuronCppVisitor::print_node_data_structure
          void print_node_data_structure(bool print_initializers)
          Print the structure that wraps all node variables required for the NMODL.
          Definition: codegen_neuron_cpp_visitor.cpp:1486
          nmodl::codegen::CppObjectSpecifier::Inline
          @ Inline
          -
          nmodl::codegen::naming::INST_GLOBAL_MEMBER
          static constexpr char INST_GLOBAL_MEMBER[]
          instance struct member pointing to the global variable structure
          Definition: codegen_naming.hpp:99
          +
          nmodl::codegen::naming::INST_GLOBAL_MEMBER
          static constexpr char INST_GLOBAL_MEMBER[]
          instance struct member pointing to the global variable structure
          Definition: codegen_naming.hpp:102
          nmodl::codegen::CodegenNeuronCppVisitor::print_make_instance
          void print_make_instance() const
          Print make_*_instance.
          Definition: codegen_neuron_cpp_visitor.cpp:1435
          nmodl::codegen::CodegenNeuronCppVisitor::print_atomic_reduction_pragma
          void print_atomic_reduction_pragma() override
          Print atomic update pragma for reduction statements.
          Definition: codegen_neuron_cpp_visitor.cpp:80
          nmodl::symtab::syminfo::NmodlType
          NmodlType
          NMODL variable properties.
          Definition: symbol_properties.hpp:116
          @@ -2747,30 +2747,30 @@
          nmodl::codegen::CodegenNeuronCppVisitor::external_method_parameters
          const ParamVector external_method_parameters(bool table=false) noexcept override
          Parameters for functions in generated code that are called back from external code.
          Definition: codegen_neuron_cpp_visitor.cpp:488
          nmodl::codegen::CodegenNeuronCppVisitor::visit_for_netcon
          void visit_for_netcon(const ast::ForNetcon &node) override
          visit node of type ast::ForNetcon
          Definition: codegen_neuron_cpp_visitor.cpp:2458
          nmodl::codegen::CodegenNeuronCppVisitor::print_function_or_procedure
          void print_function_or_procedure(const ast::Block &node, const std::string &name, const std::unordered_set< CppObjectSpecifier > &specifiers={ CppObjectSpecifier::Inline}) override
          Print nmodl function or procedure (common code)
          Definition: codegen_neuron_cpp_visitor.cpp:245
          -
          nmodl::codegen::naming::NRN_STATE_METHOD
          static constexpr char NRN_STATE_METHOD[]
          nrn_state method in generated code
          Definition: codegen_naming.hpp:162
          +
          nmodl::codegen::naming::NRN_STATE_METHOD
          static constexpr char NRN_STATE_METHOD[]
          nrn_state method in generated code
          Definition: codegen_naming.hpp:165
          nmodl::codegen::ThreadVariableInfo::symbol
          const std::shared_ptr< symtab::Symbol > symbol
          Definition: codegen_neuron_cpp_visitor.hpp:61
          config.h
          Version information and units file path.
          nmodl::codegen::CodegenNeuronCppVisitor::print_nrn_current
          void print_nrn_current(const ast::BreakpointBlock &node) override
          Print the nrn_current kernel.
          Definition: codegen_neuron_cpp_visitor.cpp:1959
          nmodl::codegen::CodegenNeuronCppVisitor::position_of_float_var
          int position_of_float_var(const std::string &name) const override
          Determine the position in the data array for a given float variable.
          Definition: codegen_neuron_cpp_visitor.cpp:64
          nmodl::codegen::CodegenNeuronCppVisitor::get_variable_name
          std::string get_variable_name(const std::string &name, bool use_instance=true) const override
          Determine variable name in the structure of mechanism properties.
          Definition: codegen_neuron_cpp_visitor.cpp:676
          -
          nmodl::codegen::naming::AREA_VARIABLE
          static constexpr char AREA_VARIABLE[]
          similar to node_area but user can explicitly declare it as area
          Definition: codegen_naming.hpp:66
          +
          nmodl::codegen::naming::AREA_VARIABLE
          static constexpr char AREA_VARIABLE[]
          similar to node_area but user can explicitly declare it as area
          Definition: codegen_naming.hpp:69
          nmodl::codegen::CodegenNeuronCppVisitor::print_make_node_data
          void print_make_node_data() const
          Print make_*_node_data.
          Definition: codegen_neuron_cpp_visitor.cpp:1500
          nmodl::ast::Ast::get_statement_block
          virtual std::shared_ptr< StatementBlock > get_statement_block() const
          Return associated statement block for the AST node.
          Definition: ast.cpp:32
          nmodl::codegen::CodegenNeuronCppVisitor::simulator_name
          std::string simulator_name() override
          Name of the simulator the code was generated for.
          Definition: codegen_neuron_cpp_visitor.cpp:45
          nmodl::codegen::CodegenNeuronCppVisitor::print_function_procedure_helper
          void print_function_procedure_helper(const ast::Block &node) override
          Common helper function to help printing function or procedure blocks.
          Definition: codegen_neuron_cpp_visitor.cpp:272
          -
          nmodl::codegen::naming::FOR_NETCON_SEMANTIC
          static constexpr char FOR_NETCON_SEMANTIC[]
          semantic type for for_netcon statement
          Definition: codegen_naming.hpp:138
          -
          nmodl::codegen::naming::NTHREAD_T_VARIABLE
          static constexpr char NTHREAD_T_VARIABLE[]
          t variable in neuron thread structure
          Definition: codegen_naming.hpp:102
          +
          nmodl::codegen::naming::FOR_NETCON_SEMANTIC
          static constexpr char FOR_NETCON_SEMANTIC[]
          semantic type for for_netcon statement
          Definition: codegen_naming.hpp:141
          +
          nmodl::codegen::naming::NTHREAD_T_VARIABLE
          static constexpr char NTHREAD_T_VARIABLE[]
          t variable in neuron thread structure
          Definition: codegen_naming.hpp:105
          nmodl::codegen::CppObjectSpecifier::Static
          @ Static
          nmodl::codegen::CodegenNeuronCppVisitor::add_variable_point_process
          void add_variable_point_process(std::vector< IndexVariableInfo > &variables) override
          Add the variable point_process during get_int_variables.
          Definition: codegen_neuron_cpp_visitor.cpp:451
          rename_visitor.hpp
          Blindly rename given variable to new name
          nmodl::codegen::BlockType::State
          @ State
          derivative block
          -
          nmodl::codegen::naming::DIAM_VARIABLE
          static constexpr char DIAM_VARIABLE[]
          inbuilt neuron variable for diameter of the compartment
          Definition: codegen_naming.hpp:60
          +
          nmodl::codegen::naming::DIAM_VARIABLE
          static constexpr char DIAM_VARIABLE[]
          inbuilt neuron variable for diameter of the compartment
          Definition: codegen_naming.hpp:63
          nmodl::ast::Block::get_parameters
          virtual const ArgumentVector & get_parameters() const
          Definition: block.hpp:50
          nmodl::visitor::VarUsageVisitor::variable_used
          bool variable_used(const ast::Node &node, std::string name)
          Definition: var_usage_visitor.cpp:26
          nmodl::codegen::CodegenNeuronCppVisitor::nrn_thread_arguments
          std::string nrn_thread_arguments() const override
          Arguments for "_threadargs_" macro in neuron implementation.
          Definition: codegen_neuron_cpp_visitor.cpp:495
          nmodl::stringutils::ends_with
          static bool ends_with(const std::string &haystack, const std::string &needle)
          Check if haystack ends with needle.
          Definition: string_utils.hpp:135
          -
          nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
          static constexpr char NRN_DESTRUCTOR_METHOD[]
          nrn_destructor method in generated code
          Definition: codegen_naming.hpp:150
          -
          nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
          static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
          range variable when conductance is not used (for vectorized model)
          Definition: codegen_naming.hpp:81
          +
          nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
          static constexpr char NRN_DESTRUCTOR_METHOD[]
          nrn_destructor method in generated code
          Definition: codegen_naming.hpp:153
          +
          nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
          static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
          range variable when conductance is not used (for vectorized model)
          Definition: codegen_naming.hpp:84
          nmodl::codegen::CodegenNeuronCppVisitor::print_codegen_routines
          void print_codegen_routines() override
          Print entry point to code generation.
          Definition: codegen_neuron_cpp_visitor.cpp:2262
          nmodl::codegen::BlockType::Initial
          @ Initial
          initial block
          @@ -2787,7 +2787,7 @@
          nmodl::codegen::CodegenNeuronCppVisitor::print_global_macros
          void print_global_macros()
          Print NEURON global variable macros.
          Definition: codegen_neuron_cpp_visitor.cpp:2152
          nmodl::codegen::Ion::intra_conc_pointer_name
          std::string intra_conc_pointer_name() const
          Definition: codegen_info.hpp:186
          nmodl::codegen::CodegenCppVisitor::ParamVector
          std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
          A vector of parameters represented by a 4-tuple of strings:
          Definition: codegen_cpp_visitor.hpp:307
          -
          nmodl::codegen::naming::ION_VARNAME_PREFIX
          static constexpr char ION_VARNAME_PREFIX[]
          prefix for ion variable
          Definition: codegen_naming.hpp:180
          +
          nmodl::codegen::naming::ION_VARNAME_PREFIX
          static constexpr char ION_VARNAME_PREFIX[]
          prefix for ion variable
          Definition: codegen_naming.hpp:183
          diff --git a/doxygen/visitor__utils_8cpp.js b/doxygen/visitor__utils_8cpp.js index 42fea0ec2..a9fd4394f 100644 --- a/doxygen/visitor__utils_8cpp.js +++ b/doxygen/visitor__utils_8cpp.js @@ -15,6 +15,7 @@ var visitor__utils_8cpp = [ "get_indexed_name", "visitor__utils_8cpp.html#a63b20bd823506ecccb7c2c79d5b153f2", null ], [ "get_local_list_statement", "visitor__utils_8cpp.html#adbdbb124708e64f8604f01b60ee326cc", null ], [ "get_new_name", "visitor__utils_8cpp.html#a9b51e3f836995236060e8eb8596dd486", null ], + [ "is_nrn_pointing", "visitor__utils_8cpp.html#aa17a783f9467d1aeeca6210555b1832a", null ], [ "is_random_construct_function", "visitor__utils_8cpp.html#a08015444c35fc7977d0e82173bf23113", null ], [ "node_exists", "visitor__utils_8cpp.html#a7520d0adea945f2e3b7a7a08f3204f36", null ], [ "solver_exists", "visitor__utils_8cpp.html#ae3bf5cf6089006e2ba8b8f93b9077703", null ], diff --git a/doxygen/visitor__utils_8cpp_source.html b/doxygen/visitor__utils_8cpp_source.html index 1a61c208a..c4c56083a 100644 --- a/doxygen/visitor__utils_8cpp_source.html +++ b/doxygen/visitor__utils_8cpp_source.html @@ -388,7 +388,12 @@
          292  return codegen::naming::RANDOM_FUNCTIONS_MAPPING.count(name) != 0;
          293 }
          294 
          -
          295 } // namespace nmodl
          +
          295 bool is_nrn_pointing(const std::string& name) {
          +
          296  return name == codegen::naming::NRN_POINTING_METHOD;
          +
          297 }
          +
          298 
          +
          299 
          +
          300 } // namespace nmodl
          nmodl::ast::IndexedName::get_length
          std::shared_ptr< Expression > get_length() const noexcept
          Getter for member variable IndexedName::length.
          Definition: indexed_name.hpp:176
          @@ -422,12 +427,13 @@
          nmodl::utils::UseNumbersInString
          UseNumbersInString
          Enum to wrap bool variable to select if random string should have numbers or not.
          Definition: common_utils.hpp:51
          nmodl::visitor::MetaAstLookupVisitor::lookup
          const nodes_t & lookup(ast_t &node)
          nmodl::visitor::NmodlPrintVisitor
          Visitor for printing AST back to NMODL
          Definition: nmodl_visitor.hpp:44
          +
          nmodl::is_nrn_pointing
          bool is_nrn_pointing(const std::string &name)
          Is given name nrn_pointing.
          Definition: visitor_utils.cpp:295
          nmodl::symtab::syminfo::to_string
          std::string to_string(const T &obj)
          Definition: symbol_properties.hpp:279
          nmodl::ast::AstNodeType::SOLVE_BLOCK
          @ SOLVE_BLOCK
          type of ast::SolveBlock
          nmodl::node_exists
          bool node_exists(const ast::Ast &node, ast::AstNodeType ast_type)
          Whether a node of type ast_type exists as a subnode of node.
          Definition: visitor_utils.cpp:218
          nmodl::ast::AstNodeType::FUNCTION_CALL
          @ FUNCTION_CALL
          type of ast::FunctionCall
          nmodl::get_full_var_name
          std::string get_full_var_name(const ast::VarName &node)
          Given a VarName node, return the full var name including index.
          Definition: visitor_utils.cpp:280
          -
          nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
          static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
          Definition: codegen_naming.hpp:199
          +
          nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
          static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
          Definition: codegen_naming.hpp:202
          nmodl::parser::UnitDriver::parse_string
          bool parse_string(const std::string &input)
          parser Units provided as string (used for testing)
          Definition: unit_driver.cpp:40
          nmodl::ast::Ast::accept
          virtual void accept(visitor::Visitor &v)=0
          Accept (or visit) the AST node using current visitor.
          nmodl::visitor::create_statement
          std::shared_ptr< Statement > create_statement(const std::string &code_statement)
          Convert given code statement (in string format) to corresponding ast node.
          Definition: visitor_utils.cpp:126
          @@ -445,6 +451,7 @@
          nmodl::visitor::add_local_variable
          LocalVar * add_local_variable(StatementBlock &node, Identifier *varname)
          Definition: visitor_utils.cpp:92
          nmodl::ast::VarName::get_name
          std::shared_ptr< Identifier > get_name() const noexcept
          Getter for member variable VarName::name.
          Definition: var_name.hpp:164
          nmodl::ast::Program::get_symbol_table
          symtab::SymbolTable * get_symbol_table() const override
          Return associated symbol table for the current ast node.
          Definition: program.hpp:153
          +
          nmodl::codegen::naming::NRN_POINTING_METHOD
          static constexpr char NRN_POINTING_METHOD[]
          nrn_pointing function in nmodl
          Definition: codegen_naming.hpp:54
          nmodl_driver.hpp
          nmodl::ast::Name
          Represents a name.
          Definition: name.hpp:44
          nmodl::ast::Program
          Represents top level AST node for whole NMODL input.
          Definition: program.hpp:39
          diff --git a/doxygen/visitor__utils_8hpp.html b/doxygen/visitor__utils_8hpp.html index b7b7b4607..f3474b54e 100644 --- a/doxygen/visitor__utils_8hpp.html +++ b/doxygen/visitor__utils_8hpp.html @@ -195,6 +195,9 @@ bool nmodl::is_random_construct_function (const std::string &name)  Is given name a one of the function for RANDOM construct. More...
            +bool nmodl::is_nrn_pointing (const std::string &name) + Is given name nrn_pointing. More...
          +  diff --git a/doxygen/visitor__utils_8hpp.js b/doxygen/visitor__utils_8hpp.js index a48b7b04f..0989096d2 100644 --- a/doxygen/visitor__utils_8hpp.js +++ b/doxygen/visitor__utils_8hpp.js @@ -15,6 +15,7 @@ var visitor__utils_8hpp = [ "get_indexed_name", "visitor__utils_8hpp.html#a63b20bd823506ecccb7c2c79d5b153f2", null ], [ "get_local_list_statement", "visitor__utils_8hpp.html#adbdbb124708e64f8604f01b60ee326cc", null ], [ "get_new_name", "visitor__utils_8hpp.html#a9b51e3f836995236060e8eb8596dd486", null ], + [ "is_nrn_pointing", "visitor__utils_8hpp.html#aa17a783f9467d1aeeca6210555b1832a", null ], [ "is_random_construct_function", "visitor__utils_8hpp.html#a08015444c35fc7977d0e82173bf23113", null ], [ "node_exists", "visitor__utils_8hpp.html#a7520d0adea945f2e3b7a7a08f3204f36", null ], [ "remove_statements_from_block", "visitor__utils_8hpp.html#adac14bab9e1357ec2c89a2ebeccaf286", null ], diff --git a/doxygen/visitor__utils_8hpp_source.html b/doxygen/visitor__utils_8hpp_source.html index 0eadce5da..380fe48da 100644 --- a/doxygen/visitor__utils_8hpp_source.html +++ b/doxygen/visitor__utils_8hpp_source.html @@ -241,8 +241,11 @@
          145 
          146 /// Is given name a one of the function for RANDOM construct
          147 bool is_random_construct_function(const std::string& name);
          -
          148 
          -
          149 } // namespace nmodl
          +
          148 
          +
          149 /// Is given name `nrn_pointing`.
          +
          150 bool is_nrn_pointing(const std::string& name);
          +
          151 
          +
          152 } // namespace nmodl
          nmodl::get_indexed_name
          std::string get_indexed_name(const ast::IndexedName &node)
          Given a Indexed node, return the name with index.
          Definition: visitor_utils.cpp:276
          @@ -259,6 +262,7 @@
          nmodl::solver_exists
          bool solver_exists(const ast::Ast &node, const std::string &name)
          Whether or not a solver of type name exists in the AST.
          Definition: visitor_utils.cpp:223
          nmodl::utils::UseNumbersInString
          UseNumbersInString
          Enum to wrap bool variable to select if random string should have numbers or not.
          Definition: common_utils.hpp:51
          nmodl::utils::WithNumbers
          @ WithNumbers
          Definition: common_utils.hpp:51
          +
          nmodl::is_nrn_pointing
          bool is_nrn_pointing(const std::string &name)
          Is given name nrn_pointing.
          Definition: visitor_utils.cpp:295
          nmodl::node_exists
          bool node_exists(const ast::Ast &node, ast::AstNodeType ast_type)
          Whether a node of type ast_type exists as a subnode of node.
          Definition: visitor_utils.cpp:218
          nmodl::get_full_var_name
          std::string get_full_var_name(const ast::VarName &node)
          Given a VarName node, return the full var name including index.
          Definition: visitor_utils.cpp:280
          nmodl::visitor::create_statement
          std::shared_ptr< Statement > create_statement(const std::string &code_statement)
          Convert given code statement (in string format) to corresponding ast node.
          Definition: visitor_utils.cpp:126
          diff --git a/notebooks/nmodl-kinetic-schemes.ipynb b/notebooks/nmodl-kinetic-schemes.ipynb index 4c39f83eb..ad332c784 100644 --- a/notebooks/nmodl-kinetic-schemes.ipynb +++ b/notebooks/nmodl-kinetic-schemes.ipynb @@ -152,10 +152,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:45.622069Z", - "iopub.status.busy": "2024-09-25T08:45:45.621871Z", - "iopub.status.idle": "2024-09-25T08:45:46.411849Z", - "shell.execute_reply": "2024-09-25T08:45:46.411046Z" + "iopub.execute_input": "2024-09-25T09:15:49.556355Z", + "iopub.status.busy": "2024-09-25T09:15:49.555801Z", + "iopub.status.idle": "2024-09-25T09:15:50.343005Z", + "shell.execute_reply": "2024-09-25T09:15:50.342251Z" } }, "outputs": [], @@ -169,10 +169,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.414562Z", - "iopub.status.busy": "2024-09-25T08:45:46.414137Z", - "iopub.status.idle": "2024-09-25T08:45:46.444072Z", - "shell.execute_reply": "2024-09-25T08:45:46.443451Z" + "iopub.execute_input": "2024-09-25T09:15:50.345696Z", + "iopub.status.busy": "2024-09-25T09:15:50.345262Z", + "iopub.status.idle": "2024-09-25T09:15:50.375768Z", + "shell.execute_reply": "2024-09-25T09:15:50.375151Z" } }, "outputs": [], @@ -277,10 +277,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.446292Z", - "iopub.status.busy": "2024-09-25T08:45:46.445984Z", - "iopub.status.idle": "2024-09-25T08:45:46.451003Z", - "shell.execute_reply": "2024-09-25T08:45:46.450294Z" + "iopub.execute_input": "2024-09-25T09:15:50.378083Z", + "iopub.status.busy": "2024-09-25T09:15:50.377681Z", + "iopub.status.idle": "2024-09-25T09:15:50.382367Z", + "shell.execute_reply": "2024-09-25T09:15:50.381709Z" } }, "outputs": [ @@ -323,10 +323,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.481066Z", - "iopub.status.busy": "2024-09-25T08:45:46.480613Z", - "iopub.status.idle": "2024-09-25T08:45:46.484671Z", - "shell.execute_reply": "2024-09-25T08:45:46.484112Z" + "iopub.execute_input": "2024-09-25T09:15:50.412543Z", + "iopub.status.busy": "2024-09-25T09:15:50.412117Z", + "iopub.status.idle": "2024-09-25T09:15:50.416069Z", + "shell.execute_reply": "2024-09-25T09:15:50.415492Z" } }, "outputs": [ @@ -367,10 +367,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.486598Z", - "iopub.status.busy": "2024-09-25T08:45:46.486221Z", - "iopub.status.idle": "2024-09-25T08:45:46.489687Z", - "shell.execute_reply": "2024-09-25T08:45:46.489133Z" + "iopub.execute_input": "2024-09-25T09:15:50.418207Z", + "iopub.status.busy": "2024-09-25T09:15:50.417825Z", + "iopub.status.idle": "2024-09-25T09:15:50.421623Z", + "shell.execute_reply": "2024-09-25T09:15:50.420874Z" }, "scrolled": true }, @@ -412,10 +412,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.491829Z", - "iopub.status.busy": "2024-09-25T08:45:46.491449Z", - "iopub.status.idle": "2024-09-25T08:45:46.495183Z", - "shell.execute_reply": "2024-09-25T08:45:46.494533Z" + "iopub.execute_input": "2024-09-25T09:15:50.423539Z", + "iopub.status.busy": "2024-09-25T09:15:50.423342Z", + "iopub.status.idle": "2024-09-25T09:15:50.427126Z", + "shell.execute_reply": "2024-09-25T09:15:50.426554Z" }, "scrolled": true }, @@ -459,10 +459,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:46.497230Z", - "iopub.status.busy": "2024-09-25T08:45:46.496860Z", - "iopub.status.idle": "2024-09-25T08:45:46.500957Z", - "shell.execute_reply": "2024-09-25T08:45:46.500415Z" + "iopub.execute_input": "2024-09-25T09:15:50.428932Z", + "iopub.status.busy": "2024-09-25T09:15:50.428735Z", + "iopub.status.idle": "2024-09-25T09:15:50.433215Z", + "shell.execute_reply": "2024-09-25T09:15:50.432660Z" } }, "outputs": [ diff --git a/notebooks/nmodl-python-tutorial.ipynb b/notebooks/nmodl-python-tutorial.ipynb index 4c6e59b56..578b42a83 100644 --- a/notebooks/nmodl-python-tutorial.ipynb +++ b/notebooks/nmodl-python-tutorial.ipynb @@ -30,10 +30,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:51.800599Z", - "iopub.status.busy": "2024-09-25T08:45:51.800053Z", - "iopub.status.idle": "2024-09-25T08:45:52.581601Z", - "shell.execute_reply": "2024-09-25T08:45:52.580853Z" + "iopub.execute_input": "2024-09-25T09:15:59.107978Z", + "iopub.status.busy": "2024-09-25T09:15:59.107783Z", + "iopub.status.idle": "2024-09-25T09:15:59.894510Z", + "shell.execute_reply": "2024-09-25T09:15:59.893623Z" } }, "outputs": [], @@ -63,10 +63,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.584366Z", - "iopub.status.busy": "2024-09-25T08:45:52.583950Z", - "iopub.status.idle": "2024-09-25T08:45:52.612592Z", - "shell.execute_reply": "2024-09-25T08:45:52.611981Z" + "iopub.execute_input": "2024-09-25T09:15:59.897211Z", + "iopub.status.busy": "2024-09-25T09:15:59.896970Z", + "iopub.status.idle": "2024-09-25T09:15:59.925717Z", + "shell.execute_reply": "2024-09-25T09:15:59.924963Z" } }, "outputs": [], @@ -86,10 +86,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.614765Z", - "iopub.status.busy": "2024-09-25T08:45:52.614359Z", - "iopub.status.idle": "2024-09-25T08:45:52.617828Z", - "shell.execute_reply": "2024-09-25T08:45:52.617289Z" + "iopub.execute_input": "2024-09-25T09:15:59.928294Z", + "iopub.status.busy": "2024-09-25T09:15:59.927717Z", + "iopub.status.idle": "2024-09-25T09:15:59.931479Z", + "shell.execute_reply": "2024-09-25T09:15:59.930957Z" } }, "outputs": [], @@ -152,10 +152,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.619825Z", - "iopub.status.busy": "2024-09-25T08:45:52.619526Z", - "iopub.status.idle": "2024-09-25T08:45:52.623160Z", - "shell.execute_reply": "2024-09-25T08:45:52.622598Z" + "iopub.execute_input": "2024-09-25T09:15:59.933700Z", + "iopub.status.busy": "2024-09-25T09:15:59.933230Z", + "iopub.status.idle": "2024-09-25T09:15:59.936876Z", + "shell.execute_reply": "2024-09-25T09:15:59.936342Z" } }, "outputs": [], @@ -183,10 +183,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.625377Z", - "iopub.status.busy": "2024-09-25T08:45:52.624930Z", - "iopub.status.idle": "2024-09-25T08:45:52.628241Z", - "shell.execute_reply": "2024-09-25T08:45:52.627606Z" + "iopub.execute_input": "2024-09-25T09:15:59.938925Z", + "iopub.status.busy": "2024-09-25T09:15:59.938554Z", + "iopub.status.idle": "2024-09-25T09:15:59.942343Z", + "shell.execute_reply": "2024-09-25T09:15:59.941784Z" } }, "outputs": [ @@ -235,10 +235,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.630343Z", - "iopub.status.busy": "2024-09-25T08:45:52.629973Z", - "iopub.status.idle": "2024-09-25T08:45:52.633831Z", - "shell.execute_reply": "2024-09-25T08:45:52.633205Z" + "iopub.execute_input": "2024-09-25T09:15:59.944582Z", + "iopub.status.busy": "2024-09-25T09:15:59.944064Z", + "iopub.status.idle": "2024-09-25T09:15:59.948204Z", + "shell.execute_reply": "2024-09-25T09:15:59.947575Z" } }, "outputs": [], @@ -260,10 +260,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.635963Z", - "iopub.status.busy": "2024-09-25T08:45:52.635594Z", - "iopub.status.idle": "2024-09-25T08:45:52.639018Z", - "shell.execute_reply": "2024-09-25T08:45:52.638455Z" + "iopub.execute_input": "2024-09-25T09:15:59.950372Z", + "iopub.status.busy": "2024-09-25T09:15:59.949989Z", + "iopub.status.idle": "2024-09-25T09:15:59.953348Z", + "shell.execute_reply": "2024-09-25T09:15:59.952733Z" } }, "outputs": [ @@ -297,10 +297,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.641275Z", - "iopub.status.busy": "2024-09-25T08:45:52.640805Z", - "iopub.status.idle": "2024-09-25T08:45:52.648014Z", - "shell.execute_reply": "2024-09-25T08:45:52.647460Z" + "iopub.execute_input": "2024-09-25T09:15:59.955440Z", + "iopub.status.busy": "2024-09-25T09:15:59.955066Z", + "iopub.status.idle": "2024-09-25T09:15:59.962094Z", + "shell.execute_reply": "2024-09-25T09:15:59.961558Z" } }, "outputs": [ @@ -365,10 +365,10 @@ "execution_count": 9, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.650142Z", - "iopub.status.busy": "2024-09-25T08:45:52.649663Z", - "iopub.status.idle": "2024-09-25T08:45:52.654024Z", - "shell.execute_reply": "2024-09-25T08:45:52.653475Z" + "iopub.execute_input": "2024-09-25T09:15:59.964024Z", + "iopub.status.busy": "2024-09-25T09:15:59.963640Z", + "iopub.status.idle": "2024-09-25T09:15:59.967963Z", + "shell.execute_reply": "2024-09-25T09:15:59.967389Z" } }, "outputs": [ @@ -416,10 +416,10 @@ "execution_count": 10, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.656221Z", - "iopub.status.busy": "2024-09-25T08:45:52.655760Z", - "iopub.status.idle": "2024-09-25T08:45:52.659112Z", - "shell.execute_reply": "2024-09-25T08:45:52.658468Z" + "iopub.execute_input": "2024-09-25T09:15:59.970125Z", + "iopub.status.busy": "2024-09-25T09:15:59.969761Z", + "iopub.status.idle": "2024-09-25T09:15:59.973106Z", + "shell.execute_reply": "2024-09-25T09:15:59.972446Z" } }, "outputs": [], @@ -441,10 +441,10 @@ "execution_count": 11, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.661134Z", - "iopub.status.busy": "2024-09-25T08:45:52.660826Z", - "iopub.status.idle": "2024-09-25T08:45:52.664762Z", - "shell.execute_reply": "2024-09-25T08:45:52.664210Z" + "iopub.execute_input": "2024-09-25T09:15:59.975117Z", + "iopub.status.busy": "2024-09-25T09:15:59.974741Z", + "iopub.status.idle": "2024-09-25T09:15:59.978330Z", + "shell.execute_reply": "2024-09-25T09:15:59.977699Z" } }, "outputs": [ @@ -510,10 +510,10 @@ "execution_count": 12, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.666788Z", - "iopub.status.busy": "2024-09-25T08:45:52.666416Z", - "iopub.status.idle": "2024-09-25T08:45:52.669563Z", - "shell.execute_reply": "2024-09-25T08:45:52.669031Z" + "iopub.execute_input": "2024-09-25T09:15:59.980332Z", + "iopub.status.busy": "2024-09-25T09:15:59.979969Z", + "iopub.status.idle": "2024-09-25T09:15:59.983345Z", + "shell.execute_reply": "2024-09-25T09:15:59.982718Z" } }, "outputs": [ @@ -548,10 +548,10 @@ "execution_count": 13, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.671650Z", - "iopub.status.busy": "2024-09-25T08:45:52.671277Z", - "iopub.status.idle": "2024-09-25T08:45:52.674470Z", - "shell.execute_reply": "2024-09-25T08:45:52.673886Z" + "iopub.execute_input": "2024-09-25T09:15:59.985401Z", + "iopub.status.busy": "2024-09-25T09:15:59.985057Z", + "iopub.status.idle": "2024-09-25T09:15:59.988522Z", + "shell.execute_reply": "2024-09-25T09:15:59.987893Z" } }, "outputs": [ @@ -584,10 +584,10 @@ "execution_count": 14, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.676440Z", - "iopub.status.busy": "2024-09-25T08:45:52.676078Z", - "iopub.status.idle": "2024-09-25T08:45:52.679468Z", - "shell.execute_reply": "2024-09-25T08:45:52.678928Z" + "iopub.execute_input": "2024-09-25T09:15:59.990538Z", + "iopub.status.busy": "2024-09-25T09:15:59.990148Z", + "iopub.status.idle": "2024-09-25T09:15:59.993860Z", + "shell.execute_reply": "2024-09-25T09:15:59.993199Z" } }, "outputs": [ @@ -622,10 +622,10 @@ "execution_count": 15, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.681496Z", - "iopub.status.busy": "2024-09-25T08:45:52.681115Z", - "iopub.status.idle": "2024-09-25T08:45:52.685447Z", - "shell.execute_reply": "2024-09-25T08:45:52.684876Z" + "iopub.execute_input": "2024-09-25T09:15:59.995821Z", + "iopub.status.busy": "2024-09-25T09:15:59.995518Z", + "iopub.status.idle": "2024-09-25T09:15:59.999652Z", + "shell.execute_reply": "2024-09-25T09:15:59.998983Z" } }, "outputs": [ @@ -669,10 +669,10 @@ "execution_count": 16, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.687552Z", - "iopub.status.busy": "2024-09-25T08:45:52.687173Z", - "iopub.status.idle": "2024-09-25T08:45:52.692260Z", - "shell.execute_reply": "2024-09-25T08:45:52.691728Z" + "iopub.execute_input": "2024-09-25T09:16:00.001752Z", + "iopub.status.busy": "2024-09-25T09:16:00.001408Z", + "iopub.status.idle": "2024-09-25T09:16:00.006357Z", + "shell.execute_reply": "2024-09-25T09:16:00.005704Z" } }, "outputs": [ @@ -733,10 +733,10 @@ "execution_count": 17, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.694330Z", - "iopub.status.busy": "2024-09-25T08:45:52.693856Z", - "iopub.status.idle": "2024-09-25T08:45:52.697549Z", - "shell.execute_reply": "2024-09-25T08:45:52.696887Z" + "iopub.execute_input": "2024-09-25T09:16:00.008337Z", + "iopub.status.busy": "2024-09-25T09:16:00.008016Z", + "iopub.status.idle": "2024-09-25T09:16:00.011635Z", + "shell.execute_reply": "2024-09-25T09:16:00.010993Z" } }, "outputs": [], @@ -761,10 +761,10 @@ "execution_count": 18, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.699694Z", - "iopub.status.busy": "2024-09-25T08:45:52.699346Z", - "iopub.status.idle": "2024-09-25T08:45:52.709322Z", - "shell.execute_reply": "2024-09-25T08:45:52.708763Z" + "iopub.execute_input": "2024-09-25T09:16:00.013843Z", + "iopub.status.busy": "2024-09-25T09:16:00.013450Z", + "iopub.status.idle": "2024-09-25T09:16:00.023683Z", + "shell.execute_reply": "2024-09-25T09:16:00.023139Z" } }, "outputs": [], @@ -857,10 +857,10 @@ "execution_count": 19, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.711253Z", - "iopub.status.busy": "2024-09-25T08:45:52.710853Z", - "iopub.status.idle": "2024-09-25T08:45:52.714489Z", - "shell.execute_reply": "2024-09-25T08:45:52.713830Z" + "iopub.execute_input": "2024-09-25T09:16:00.025680Z", + "iopub.status.busy": "2024-09-25T09:16:00.025298Z", + "iopub.status.idle": "2024-09-25T09:16:00.028814Z", + "shell.execute_reply": "2024-09-25T09:16:00.028188Z" } }, "outputs": [ @@ -897,10 +897,10 @@ "execution_count": 20, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:52.716986Z", - "iopub.status.busy": "2024-09-25T08:45:52.716316Z", - "iopub.status.idle": "2024-09-25T08:45:52.721844Z", - "shell.execute_reply": "2024-09-25T08:45:52.721318Z" + "iopub.execute_input": "2024-09-25T09:16:00.030869Z", + "iopub.status.busy": "2024-09-25T09:16:00.030485Z", + "iopub.status.idle": "2024-09-25T09:16:00.036228Z", + "shell.execute_reply": "2024-09-25T09:16:00.035660Z" } }, "outputs": [ diff --git a/notebooks/nmodl-sympy-conductance.ipynb b/notebooks/nmodl-sympy-conductance.ipynb index d243321cb..352b5a411 100644 --- a/notebooks/nmodl-sympy-conductance.ipynb +++ b/notebooks/nmodl-sympy-conductance.ipynb @@ -86,10 +86,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:55.097945Z", - "iopub.status.busy": "2024-09-25T08:45:55.097753Z", - "iopub.status.idle": "2024-09-25T08:45:55.876445Z", - "shell.execute_reply": "2024-09-25T08:45:55.875571Z" + "iopub.execute_input": "2024-09-25T09:16:02.353631Z", + "iopub.status.busy": "2024-09-25T09:16:02.353449Z", + "iopub.status.idle": "2024-09-25T09:16:03.142630Z", + "shell.execute_reply": "2024-09-25T09:16:03.141707Z" } }, "outputs": [], @@ -103,10 +103,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:55.879106Z", - "iopub.status.busy": "2024-09-25T08:45:55.878877Z", - "iopub.status.idle": "2024-09-25T08:45:55.909309Z", - "shell.execute_reply": "2024-09-25T08:45:55.908599Z" + "iopub.execute_input": "2024-09-25T09:16:03.145165Z", + "iopub.status.busy": "2024-09-25T09:16:03.144953Z", + "iopub.status.idle": "2024-09-25T09:16:03.175734Z", + "shell.execute_reply": "2024-09-25T09:16:03.174984Z" } }, "outputs": [], @@ -149,10 +149,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:55.911661Z", - "iopub.status.busy": "2024-09-25T08:45:55.911329Z", - "iopub.status.idle": "2024-09-25T08:45:56.177292Z", - "shell.execute_reply": "2024-09-25T08:45:56.176574Z" + "iopub.execute_input": "2024-09-25T09:16:03.178115Z", + "iopub.status.busy": "2024-09-25T09:16:03.177906Z", + "iopub.status.idle": "2024-09-25T09:16:03.469921Z", + "shell.execute_reply": "2024-09-25T09:16:03.469207Z" } }, "outputs": [ @@ -196,10 +196,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.179622Z", - "iopub.status.busy": "2024-09-25T08:45:56.179207Z", - "iopub.status.idle": "2024-09-25T08:45:56.308917Z", - "shell.execute_reply": "2024-09-25T08:45:56.308334Z" + "iopub.execute_input": "2024-09-25T09:16:03.472300Z", + "iopub.status.busy": "2024-09-25T09:16:03.471857Z", + "iopub.status.idle": "2024-09-25T09:16:03.602987Z", + "shell.execute_reply": "2024-09-25T09:16:03.602369Z" } }, "outputs": [ @@ -243,10 +243,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.311087Z", - "iopub.status.busy": "2024-09-25T08:45:56.310578Z", - "iopub.status.idle": "2024-09-25T08:45:56.318669Z", - "shell.execute_reply": "2024-09-25T08:45:56.318035Z" + "iopub.execute_input": "2024-09-25T09:16:03.605247Z", + "iopub.status.busy": "2024-09-25T09:16:03.604857Z", + "iopub.status.idle": "2024-09-25T09:16:03.612716Z", + "shell.execute_reply": "2024-09-25T09:16:03.612198Z" } }, "outputs": [ @@ -290,10 +290,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.320772Z", - "iopub.status.busy": "2024-09-25T08:45:56.320333Z", - "iopub.status.idle": "2024-09-25T08:45:56.336612Z", - "shell.execute_reply": "2024-09-25T08:45:56.336079Z" + "iopub.execute_input": "2024-09-25T09:16:03.614643Z", + "iopub.status.busy": "2024-09-25T09:16:03.614295Z", + "iopub.status.idle": "2024-09-25T09:16:03.631304Z", + "shell.execute_reply": "2024-09-25T09:16:03.630617Z" } }, "outputs": [ @@ -337,10 +337,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.338719Z", - "iopub.status.busy": "2024-09-25T08:45:56.338299Z", - "iopub.status.idle": "2024-09-25T08:45:56.455337Z", - "shell.execute_reply": "2024-09-25T08:45:56.454760Z" + "iopub.execute_input": "2024-09-25T09:16:03.633402Z", + "iopub.status.busy": "2024-09-25T09:16:03.633186Z", + "iopub.status.idle": "2024-09-25T09:16:03.752590Z", + "shell.execute_reply": "2024-09-25T09:16:03.751923Z" } }, "outputs": [ @@ -400,10 +400,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.457102Z", - "iopub.status.busy": "2024-09-25T08:45:56.456909Z", - "iopub.status.idle": "2024-09-25T08:45:56.554469Z", - "shell.execute_reply": "2024-09-25T08:45:56.553786Z" + "iopub.execute_input": "2024-09-25T09:16:03.754498Z", + "iopub.status.busy": "2024-09-25T09:16:03.754291Z", + "iopub.status.idle": "2024-09-25T09:16:03.849854Z", + "shell.execute_reply": "2024-09-25T09:16:03.849188Z" } }, "outputs": [ @@ -456,10 +456,10 @@ "execution_count": 9, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:56.556461Z", - "iopub.status.busy": "2024-09-25T08:45:56.556264Z", - "iopub.status.idle": "2024-09-25T08:45:56.639423Z", - "shell.execute_reply": "2024-09-25T08:45:56.638853Z" + "iopub.execute_input": "2024-09-25T09:16:03.851782Z", + "iopub.status.busy": "2024-09-25T09:16:03.851581Z", + "iopub.status.idle": "2024-09-25T09:16:03.924267Z", + "shell.execute_reply": "2024-09-25T09:16:03.923573Z" } }, "outputs": [ diff --git a/notebooks/nmodl-sympy-solver-cnexp.ipynb b/notebooks/nmodl-sympy-solver-cnexp.ipynb index 0d45e9af8..5eff9f6c7 100644 --- a/notebooks/nmodl-sympy-solver-cnexp.ipynb +++ b/notebooks/nmodl-sympy-solver-cnexp.ipynb @@ -62,10 +62,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:58.321712Z", - "iopub.status.busy": "2024-09-25T08:45:58.321521Z", - "iopub.status.idle": "2024-09-25T08:45:59.104607Z", - "shell.execute_reply": "2024-09-25T08:45:59.103799Z" + "iopub.execute_input": "2024-09-25T09:16:05.624610Z", + "iopub.status.busy": "2024-09-25T09:16:05.624429Z", + "iopub.status.idle": "2024-09-25T09:16:06.415116Z", + "shell.execute_reply": "2024-09-25T09:16:06.414289Z" } }, "outputs": [], @@ -79,10 +79,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.107010Z", - "iopub.status.busy": "2024-09-25T08:45:59.106780Z", - "iopub.status.idle": "2024-09-25T08:45:59.137049Z", - "shell.execute_reply": "2024-09-25T08:45:59.136439Z" + "iopub.execute_input": "2024-09-25T09:16:06.417958Z", + "iopub.status.busy": "2024-09-25T09:16:06.417539Z", + "iopub.status.idle": "2024-09-25T09:16:06.447873Z", + "shell.execute_reply": "2024-09-25T09:16:06.447258Z" } }, "outputs": [], @@ -123,10 +123,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.139098Z", - "iopub.status.busy": "2024-09-25T08:45:59.138865Z", - "iopub.status.idle": "2024-09-25T08:45:59.552159Z", - "shell.execute_reply": "2024-09-25T08:45:59.551473Z" + "iopub.execute_input": "2024-09-25T09:16:06.450320Z", + "iopub.status.busy": "2024-09-25T09:16:06.449924Z", + "iopub.status.idle": "2024-09-25T09:16:06.866013Z", + "shell.execute_reply": "2024-09-25T09:16:06.865273Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.554547Z", - "iopub.status.busy": "2024-09-25T08:45:59.554002Z", - "iopub.status.idle": "2024-09-25T08:45:59.663789Z", - "shell.execute_reply": "2024-09-25T08:45:59.663101Z" + "iopub.execute_input": "2024-09-25T09:16:06.868309Z", + "iopub.status.busy": "2024-09-25T09:16:06.867927Z", + "iopub.status.idle": "2024-09-25T09:16:06.978442Z", + "shell.execute_reply": "2024-09-25T09:16:06.977780Z" } }, "outputs": [ @@ -207,10 +207,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.665886Z", - "iopub.status.busy": "2024-09-25T08:45:59.665684Z", - "iopub.status.idle": "2024-09-25T08:45:59.860119Z", - "shell.execute_reply": "2024-09-25T08:45:59.859524Z" + "iopub.execute_input": "2024-09-25T09:16:06.980352Z", + "iopub.status.busy": "2024-09-25T09:16:06.980151Z", + "iopub.status.idle": "2024-09-25T09:16:07.183307Z", + "shell.execute_reply": "2024-09-25T09:16:07.182670Z" } }, "outputs": [ @@ -255,10 +255,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:45:59.862024Z", - "iopub.status.busy": "2024-09-25T08:45:59.861828Z", - "iopub.status.idle": "2024-09-25T08:46:00.017296Z", - "shell.execute_reply": "2024-09-25T08:46:00.016721Z" + "iopub.execute_input": "2024-09-25T09:16:07.185547Z", + "iopub.status.busy": "2024-09-25T09:16:07.185148Z", + "iopub.status.idle": "2024-09-25T09:16:07.342855Z", + "shell.execute_reply": "2024-09-25T09:16:07.342174Z" } }, "outputs": [ @@ -303,10 +303,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:00.019302Z", - "iopub.status.busy": "2024-09-25T08:46:00.019101Z", - "iopub.status.idle": "2024-09-25T08:46:01.746029Z", - "shell.execute_reply": "2024-09-25T08:46:01.745411Z" + "iopub.execute_input": "2024-09-25T09:16:07.345154Z", + "iopub.status.busy": "2024-09-25T09:16:07.344798Z", + "iopub.status.idle": "2024-09-25T09:16:09.109045Z", + "shell.execute_reply": "2024-09-25T09:16:09.108361Z" } }, "outputs": [ @@ -351,10 +351,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:01.748138Z", - "iopub.status.busy": "2024-09-25T08:46:01.747938Z", - "iopub.status.idle": "2024-09-25T08:46:03.913265Z", - "shell.execute_reply": "2024-09-25T08:46:03.912629Z" + "iopub.execute_input": "2024-09-25T09:16:09.111348Z", + "iopub.status.busy": "2024-09-25T09:16:09.110859Z", + "iopub.status.idle": "2024-09-25T09:16:11.296500Z", + "shell.execute_reply": "2024-09-25T09:16:11.295773Z" } }, "outputs": [ diff --git a/notebooks/nmodl-sympy-solver-derivimplicit.ipynb b/notebooks/nmodl-sympy-solver-derivimplicit.ipynb index f992c66b0..e1635cccd 100644 --- a/notebooks/nmodl-sympy-solver-derivimplicit.ipynb +++ b/notebooks/nmodl-sympy-solver-derivimplicit.ipynb @@ -39,10 +39,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:05.424673Z", - "iopub.status.busy": "2024-09-25T08:46:05.424478Z", - "iopub.status.idle": "2024-09-25T08:46:06.210238Z", - "shell.execute_reply": "2024-09-25T08:46:06.209414Z" + "iopub.execute_input": "2024-09-25T09:16:12.836986Z", + "iopub.status.busy": "2024-09-25T09:16:12.836785Z", + "iopub.status.idle": "2024-09-25T09:16:13.624439Z", + "shell.execute_reply": "2024-09-25T09:16:13.623679Z" } }, "outputs": [], @@ -56,10 +56,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:06.212762Z", - "iopub.status.busy": "2024-09-25T08:46:06.212523Z", - "iopub.status.idle": "2024-09-25T08:46:06.244452Z", - "shell.execute_reply": "2024-09-25T08:46:06.243761Z" + "iopub.execute_input": "2024-09-25T09:16:13.627091Z", + "iopub.status.busy": "2024-09-25T09:16:13.626661Z", + "iopub.status.idle": "2024-09-25T09:16:13.657788Z", + "shell.execute_reply": "2024-09-25T09:16:13.657145Z" } }, "outputs": [], @@ -100,10 +100,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:06.246833Z", - "iopub.status.busy": "2024-09-25T08:46:06.246619Z", - "iopub.status.idle": "2024-09-25T08:46:06.737827Z", - "shell.execute_reply": "2024-09-25T08:46:06.737144Z" + "iopub.execute_input": "2024-09-25T09:16:13.660330Z", + "iopub.status.busy": "2024-09-25T09:16:13.659909Z", + "iopub.status.idle": "2024-09-25T09:16:14.161359Z", + "shell.execute_reply": "2024-09-25T09:16:14.160648Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:06.739922Z", - "iopub.status.busy": "2024-09-25T08:46:06.739675Z", - "iopub.status.idle": "2024-09-25T08:46:07.056522Z", - "shell.execute_reply": "2024-09-25T08:46:07.055918Z" + "iopub.execute_input": "2024-09-25T09:16:14.163774Z", + "iopub.status.busy": "2024-09-25T09:16:14.163323Z", + "iopub.status.idle": "2024-09-25T09:16:14.459253Z", + "shell.execute_reply": "2024-09-25T09:16:14.458628Z" } }, "outputs": [ diff --git a/notebooks/nmodl-sympy-solver-sparse.ipynb b/notebooks/nmodl-sympy-solver-sparse.ipynb index a5e87d836..aa1717910 100644 --- a/notebooks/nmodl-sympy-solver-sparse.ipynb +++ b/notebooks/nmodl-sympy-solver-sparse.ipynb @@ -39,10 +39,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:08.372311Z", - "iopub.status.busy": "2024-09-25T08:46:08.372130Z", - "iopub.status.idle": "2024-09-25T08:46:09.152939Z", - "shell.execute_reply": "2024-09-25T08:46:09.152052Z" + "iopub.execute_input": "2024-09-25T09:16:15.935122Z", + "iopub.status.busy": "2024-09-25T09:16:15.934929Z", + "iopub.status.idle": "2024-09-25T09:16:16.729297Z", + "shell.execute_reply": "2024-09-25T09:16:16.728526Z" } }, "outputs": [], @@ -56,10 +56,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:09.155548Z", - "iopub.status.busy": "2024-09-25T08:46:09.155323Z", - "iopub.status.idle": "2024-09-25T08:46:09.185936Z", - "shell.execute_reply": "2024-09-25T08:46:09.185301Z" + "iopub.execute_input": "2024-09-25T09:16:16.731953Z", + "iopub.status.busy": "2024-09-25T09:16:16.731515Z", + "iopub.status.idle": "2024-09-25T09:16:16.761568Z", + "shell.execute_reply": "2024-09-25T09:16:16.760940Z" } }, "outputs": [], @@ -100,10 +100,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:09.188187Z", - "iopub.status.busy": "2024-09-25T08:46:09.187984Z", - "iopub.status.idle": "2024-09-25T08:46:09.683161Z", - "shell.execute_reply": "2024-09-25T08:46:09.682407Z" + "iopub.execute_input": "2024-09-25T09:16:16.763776Z", + "iopub.status.busy": "2024-09-25T09:16:16.763374Z", + "iopub.status.idle": "2024-09-25T09:16:17.252864Z", + "shell.execute_reply": "2024-09-25T09:16:17.252122Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-25T08:46:09.685164Z", - "iopub.status.busy": "2024-09-25T08:46:09.684923Z", - "iopub.status.idle": "2024-09-25T08:46:09.980506Z", - "shell.execute_reply": "2024-09-25T08:46:09.979804Z" + "iopub.execute_input": "2024-09-25T09:16:17.254944Z", + "iopub.status.busy": "2024-09-25T09:16:17.254691Z", + "iopub.status.idle": "2024-09-25T09:16:17.551078Z", + "shell.execute_reply": "2024-09-25T09:16:17.550481Z" } }, "outputs": [